Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47147 * 2 1 4 4 N 1.46899 * 109.47228 * 180.02562 * 3 2 1 5 5 C 1.46846 * 110.99772 * 66.04519 * 4 3 2 6 6 C 1.53042 * 109.52503 * 174.16267 * 5 4 3 7 7 C 1.53115 * 109.27580 * 59.17694 * 6 5 4 8 8 C 1.53118 * 109.16814 * 302.34894 * 7 6 5 9 9 H 1.08999 * 109.49832 * 297.67771 * 8 7 6 10 10 C 1.50692 * 109.50796 * 177.59339 * 8 7 6 11 11 O 1.21278 * 120.00444 * 246.72176 * 10 8 7 12 12 N 1.34780 * 119.99921 * 66.71411 * 10 8 7 13 13 C 1.46493 * 120.00118 * 185.02382 * 12 10 8 14 14 C 1.53002 * 109.47013 * 84.88908 * 13 12 10 15 15 C 1.46500 * 119.99854 * 5.03011 * 12 10 8 16 16 C 1.50703 * 109.47145 * 95.69817 * 15 12 10 17 17 H 1.08004 * 120.00303 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00252 * 179.97438 * 16 15 12 19 19 N 1.31522 * 119.99708 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00299 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46921 * 60.00603 * 20 18 16 22 22 H 1.48502 * 109.47535 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47557 * 300.00392 * 20 18 16 24 24 C 1.46850 * 110.99912 * 301.84223 * 4 3 2 25 25 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47080 * 300.00282 * 1 2 3 27 27 H 1.09001 * 109.47137 * 59.99360 * 1 2 3 28 28 H 1.08999 * 109.46841 * 240.00197 * 2 1 3 29 29 H 1.08992 * 109.47010 * 120.00365 * 2 1 3 30 30 H 1.08999 * 109.47089 * 60.00349 * 3 2 1 31 31 H 1.09001 * 109.47624 * 300.00342 * 3 2 1 32 32 H 1.09000 * 109.46786 * 294.17607 * 5 4 3 33 33 H 1.09001 * 109.46517 * 54.15737 * 5 4 3 34 34 H 1.09000 * 109.50345 * 179.12498 * 6 5 4 35 35 H 1.09005 * 109.50144 * 299.20424 * 6 5 4 36 36 H 1.09009 * 109.52248 * 62.25797 * 7 6 5 37 37 H 1.09006 * 109.52182 * 182.37917 * 7 6 5 38 38 H 1.09003 * 109.47510 * 204.88985 * 13 12 10 39 39 H 1.08998 * 109.47403 * 324.88819 * 13 12 10 40 40 H 1.08989 * 109.47165 * 299.99830 * 14 13 12 41 41 H 1.09004 * 109.46824 * 60.00059 * 14 13 12 42 42 H 1.09007 * 109.47003 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.47417 * 215.69836 * 15 12 10 44 44 H 1.09001 * 109.47064 * 335.70294 * 15 12 10 45 45 H 0.97002 * 119.99956 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.45830 * 305.84711 * 24 4 3 47 47 H 1.08998 * 109.46462 * 65.82215 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0347 0.8861 -1.2538 6 6 5.5576 1.0350 -1.2805 7 6 6.1587 0.2975 -0.0809 8 6 5.5587 0.8631 1.2093 9 1 5.8226 1.9166 1.3019 10 6 6.1008 0.1027 2.3920 11 8 5.3615 -0.5915 3.0572 12 7 7.4072 0.1939 2.7105 13 6 7.9570 -0.6289 3.7906 14 6 8.3355 -2.0057 3.2408 15 6 8.2774 1.1161 1.9765 16 6 8.3871 2.4139 2.7346 17 1 7.8616 2.5392 3.6698 18 6 9.1592 3.4411 2.2349 19 7 9.7996 3.2884 1.0963 20 14 9.2947 5.0500 3.1741 21 1 9.8689 4.7913 4.5190 22 1 10.1778 5.9844 2.4309 23 1 7.9456 5.6534 3.3197 24 6 4.0357 0.7190 1.1637 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.7719 -0.1696 -1.3209 33 1 3.6026 1.4223 -2.0987 34 1 5.9489 0.6079 -2.2038 35 1 5.8209 2.0915 -1.2280 36 1 5.9286 -0.7655 -0.1542 37 1 7.2399 0.4363 -0.0723 38 1 8.8436 -0.1452 4.2006 39 1 7.2100 -0.7441 4.5759 40 1 7.4490 -2.4894 2.8308 41 1 9.0825 -1.8904 2.4554 42 1 8.7442 -2.6181 4.0446 43 1 9.2676 0.6734 1.8689 44 1 7.8552 1.3063 0.9898 45 1 10.3426 4.0112 0.7445 46 1 3.6044 1.1340 2.0746 47 1 3.7729 -0.3359 1.0852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906374900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = -50.951226 kcal Electronic energy + Delta-G solvation = -23906.749431 eV Core-core repulsion = 20702.705905 eV Total energy + Delta-G solvation = -3204.043526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90264 -38.24205 -35.18308 -34.79279 -32.75058 -31.78717 -30.90224 -29.86112 -26.99145 -26.17649 -24.13928 -23.36341 -22.90257 -21.95999 -21.36941 -19.14771 -18.12380 -16.63848 -16.23848 -15.88613 -15.26325 -15.04411 -14.59010 -14.48824 -14.28464 -13.99477 -13.84666 -13.41389 -12.96840 -12.82414 -12.60793 -12.32340 -12.16765 -11.85661 -11.72689 -11.66152 -11.52786 -11.45321 -11.35413 -11.09230 -10.95522 -10.76402 -10.65324 -10.43499 -10.37445 -10.22811 -10.06109 -10.00103 -9.58433 -8.88441 -8.48203 -8.03563 -7.66154 -6.15174 -4.21695 3.27315 3.31811 3.34109 3.45875 3.84035 4.25734 4.39234 4.88012 4.90067 5.07420 5.16698 5.19282 5.24064 5.31627 5.40844 5.48655 5.60548 5.62943 5.68537 5.72635 5.78411 5.85262 5.89944 5.91537 5.94831 6.01494 6.02480 6.13686 6.16561 6.26195 6.29741 6.30416 6.43065 6.48771 6.57224 6.66327 6.74911 6.88187 7.24864 7.30002 7.31502 7.60597 7.79395 8.09852 8.41330 8.82153 9.06877 9.45775 10.91390 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.005359 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.751301 B = 5224.004256 C = 6088.798937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.058 3.942 4 N -0.537 5.537 5 C 0.055 3.945 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.100 4.100 9 H 0.113 0.887 10 C 0.522 3.478 11 O -0.579 6.579 12 N -0.593 5.593 13 C 0.115 3.885 14 C -0.162 4.162 15 C 0.225 3.775 16 C -0.538 4.538 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.891 5.891 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.080 3.920 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.031 0.969 44 H 0.057 0.943 45 H 0.265 0.735 46 H 0.075 0.925 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 -5.843 -4.631 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C -0.071 4.071 4 N -0.259 5.259 5 C -0.073 4.073 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.121 4.121 9 H 0.131 0.869 10 C 0.310 3.690 11 O -0.461 6.461 12 N -0.323 5.323 13 C -0.008 4.008 14 C -0.221 4.221 15 C 0.106 3.894 16 C -0.577 4.577 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.048 4.048 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.395 -5.598 -4.389 12.595 hybrid contribution 0.042 0.169 0.442 0.475 sum -10.353 -5.429 -3.947 12.338 Atomic orbital electron populations 1.21673 0.95648 1.01407 1.01664 1.22239 0.96452 0.99441 1.02470 1.22218 0.87217 0.95075 1.02548 1.62085 1.06566 1.54721 1.02576 1.22118 0.95985 0.97295 0.91921 1.21564 0.93808 1.02152 0.97661 1.21736 1.01979 0.98670 0.93003 1.21196 0.94779 1.02753 0.93387 0.86863 1.20395 0.82077 0.81150 0.85371 1.90565 1.58015 1.43397 1.54121 1.48215 1.08852 1.40383 1.34826 1.21201 0.99012 0.90402 0.90220 1.22105 1.01287 0.97509 1.01168 1.19732 0.89643 0.87169 0.92857 1.21466 1.29912 0.98370 1.07909 0.92264 1.24909 0.95062 0.98708 0.94975 1.69907 1.30706 1.33331 1.19027 0.86586 0.78203 0.82995 0.79875 1.20231 1.21160 1.20044 1.21797 0.93690 0.96506 0.92829 0.93041 0.92673 0.92887 0.92069 0.91374 0.90749 0.90978 0.95055 0.91184 0.91589 0.90430 0.92814 0.89276 0.90355 0.91475 0.92953 0.92674 0.92506 0.95079 0.92583 0.92521 0.90682 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.17 -1.87 5.23 -26.73 -0.14 -2.01 16 3 C 0.06 0.70 5.36 -3.82 -0.02 0.67 16 4 N -0.54 -7.85 4.86 -234.66 -1.14 -8.99 16 5 C 0.05 0.73 5.05 -3.83 -0.02 0.71 16 6 C -0.11 -1.65 6.09 -26.65 -0.16 -1.81 16 7 C -0.12 -1.95 4.90 -26.61 -0.13 -2.08 16 8 C -0.10 -1.87 1.84 -91.69 -0.17 -2.04 16 9 H 0.11 2.38 7.67 -51.93 -0.40 1.98 16 10 C 0.52 11.03 6.94 -10.99 -0.08 10.95 16 11 O -0.58 -13.18 15.60 5.56 0.09 -13.09 16 12 N -0.59 -12.62 2.47 -175.06 -0.43 -13.06 16 13 C 0.12 2.19 6.14 -4.04 -0.02 2.16 16 14 C -0.16 -2.64 10.20 37.16 0.38 -2.26 16 15 C 0.23 5.30 4.63 -5.19 -0.02 5.28 16 16 C -0.54 -14.08 9.38 -34.44 -0.32 -14.40 16 17 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 18 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 20 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.08 1.34 3.45 -3.83 -0.01 1.32 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.69 6.68 -51.93 -0.35 0.34 16 29 H 0.07 0.87 6.51 -51.93 -0.34 0.54 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.03 0.41 6.75 -51.93 -0.35 0.06 16 33 H 0.07 0.82 8.06 -51.93 -0.42 0.41 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.09 1.64 5.41 -51.93 -0.28 1.35 16 38 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 39 H 0.07 1.29 7.51 -51.93 -0.39 0.90 16 40 H 0.05 0.89 8.14 -51.94 -0.42 0.47 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 44 H 0.06 1.33 3.96 -51.93 -0.21 1.12 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 47 H 0.04 0.71 6.47 -51.93 -0.34 0.37 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -28.13 360.56 -9.31 -37.44 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.52 Total: 2.98 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.45 Total: -2.81 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.84 Total: -45.65 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.13 -9.31 -37.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.512 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds