Wall clock time and date at job start Tue Mar 31 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46923 * 2 1 4 4 N 1.46898 * 109.46993 * 179.97438 * 3 2 1 5 5 C 1.46848 * 111.00242 * 66.04192 * 4 3 2 6 6 C 1.53043 * 109.52565 * 185.83897 * 5 4 3 7 7 C 1.53114 * 109.30726 * 300.80204 * 6 5 4 8 8 C 1.53200 * 109.12258 * 57.63491 * 7 6 5 9 9 H 1.09001 * 109.49236 * 62.31480 * 8 7 6 10 10 C 1.50700 * 109.52891 * 182.40114 * 8 7 6 11 11 O 1.21280 * 120.00204 * 119.84611 * 10 8 7 12 12 N 1.34781 * 119.99736 * 299.84208 * 10 8 7 13 13 C 1.46503 * 120.00040 * 359.97438 * 12 10 8 14 14 C 1.46498 * 119.99596 * 180.02562 * 12 10 8 15 15 H 1.08998 * 109.47130 * 359.97438 * 14 12 10 16 16 C 1.52996 * 109.47050 * 239.99900 * 14 12 10 17 17 C 1.50708 * 109.47096 * 120.00224 * 14 12 10 18 18 H 1.07999 * 119.99907 * 5.44902 * 17 14 12 19 19 C 1.37876 * 120.00022 * 185.45435 * 17 14 12 20 20 N 1.31516 * 119.99837 * 9.61840 * 19 17 14 21 21 Si 1.86797 * 119.99932 * 189.61670 * 19 17 14 22 22 H 1.48497 * 109.46954 * 84.99620 * 21 19 17 23 23 H 1.48504 * 109.47101 * 204.99467 * 21 19 17 24 24 H 1.48501 * 109.47102 * 324.99255 * 21 19 17 25 25 C 1.46846 * 111.00077 * 190.25283 * 4 3 2 26 26 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47243 * 300.00354 * 1 2 3 28 28 H 1.08997 * 109.46939 * 60.00737 * 1 2 3 29 29 H 1.08992 * 109.47521 * 239.99177 * 2 1 3 30 30 H 1.09007 * 109.47014 * 119.99358 * 2 1 3 31 31 H 1.08992 * 109.47694 * 59.99283 * 3 2 1 32 32 H 1.09007 * 109.46751 * 299.99518 * 3 2 1 33 33 H 1.09004 * 109.46143 * 65.82255 * 5 4 3 34 34 H 1.08999 * 109.45262 * 305.85300 * 5 4 3 35 35 H 1.08998 * 109.50087 * 60.76013 * 6 5 4 36 36 H 1.08997 * 109.50125 * 180.84173 * 6 5 4 37 37 H 1.09002 * 109.52013 * 177.58104 * 7 6 5 38 38 H 1.09006 * 109.52464 * 297.76278 * 7 6 5 39 39 H 1.09002 * 109.46936 * 90.00431 * 13 12 10 40 40 H 1.09001 * 109.46568 * 209.99614 * 13 12 10 41 41 H 1.08995 * 109.47122 * 330.00123 * 13 12 10 42 42 H 1.09001 * 109.47140 * 303.28915 * 16 14 12 43 43 H 1.09001 * 109.47251 * 63.29320 * 16 14 12 44 44 H 1.08998 * 109.47091 * 183.28937 * 16 14 12 45 45 H 0.96998 * 119.99960 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46376 * 294.17490 * 25 4 3 47 47 H 1.09000 * 109.46275 * 54.15199 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0358 0.8857 -1.2519 6 6 5.5587 0.7665 -1.1580 7 6 6.1600 2.1511 -0.9014 8 6 5.5579 2.7294 0.3831 9 1 5.8208 2.0918 1.2272 10 6 6.0993 4.1169 0.6130 11 8 5.3421 5.0630 0.6614 12 7 7.4251 4.3063 0.7648 13 6 8.3397 3.1634 0.7069 14 6 7.9513 5.6551 0.9888 15 1 7.1278 6.3690 1.0009 16 6 8.9227 6.0169 -0.1365 17 6 8.6746 5.6991 2.3102 18 1 8.8126 4.7925 2.8807 19 6 9.1600 6.8967 2.7909 20 7 8.8323 8.0242 2.1986 21 14 10.2829 6.9177 4.2835 22 1 11.6847 6.6861 3.8516 23 1 10.1845 8.2368 4.9585 24 1 9.8723 5.8470 5.2270 25 6 4.0351 2.7916 0.2447 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8898 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9564 0.8898 32 1 1.6766 1.9563 -0.8901 33 1 3.7734 1.5434 -2.0805 34 1 3.6040 -0.1009 -1.4205 35 1 5.8216 0.0980 -0.3383 36 1 5.9508 0.3671 -2.0934 37 1 7.2409 2.0640 -0.7912 38 1 5.9303 2.8091 -1.7396 39 1 8.6643 3.0095 -0.3222 40 1 9.2078 3.3605 1.3360 41 1 7.8277 2.2698 1.0639 42 1 9.7151 5.2700 -0.1867 43 1 8.3866 6.0422 -1.0852 44 1 9.3586 6.9963 0.0607 45 1 9.1734 8.8668 2.5370 46 1 3.7727 3.4405 -0.5910 47 1 3.6030 3.1893 1.1629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906564309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:37 Heat of formation + Delta-G solvation = -46.046340 kcal Electronic energy + Delta-G solvation = -23440.504213 eV Core-core repulsion = 20236.673379 eV Total energy + Delta-G solvation = -3203.830834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95211 -38.18571 -35.32479 -35.00889 -32.90362 -31.88531 -30.98522 -29.22164 -26.46528 -26.09387 -25.17454 -24.12688 -22.98926 -21.58865 -20.63845 -19.75331 -18.20796 -16.64558 -16.19431 -16.02198 -15.52101 -15.16586 -14.75425 -14.43601 -14.16507 -14.04656 -13.88326 -13.48599 -12.95616 -12.89504 -12.58736 -12.41776 -12.09324 -12.00371 -11.82449 -11.69006 -11.59247 -11.23632 -11.14276 -11.03741 -10.99357 -10.93668 -10.72234 -10.61915 -10.43013 -10.25370 -10.15992 -10.13284 -9.21106 -8.76647 -8.38403 -8.31681 -7.55651 -6.07187 -4.11892 3.27902 3.34504 3.36234 3.45047 3.68885 4.16317 4.42608 4.70907 4.77183 4.85215 4.96009 5.03846 5.17623 5.23990 5.25139 5.32834 5.35824 5.47165 5.53991 5.58449 5.62068 5.75467 5.77216 5.82744 5.83765 5.94658 5.95314 6.02146 6.04865 6.07814 6.12839 6.24043 6.37028 6.45992 6.69444 6.77472 7.01108 7.08849 7.09695 7.37978 7.57919 7.72401 7.95461 8.19851 8.57305 8.87708 9.11407 9.53219 11.00253 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.003654 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.220404 B = 7661.252090 C = 7975.493027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.055 3.945 4 N -0.541 5.541 5 C 0.051 3.949 6 C -0.113 4.113 7 C -0.123 4.123 8 C -0.101 4.101 9 H 0.099 0.901 10 C 0.509 3.491 11 O -0.554 6.554 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.255 3.745 15 H 0.069 0.931 16 C -0.140 4.140 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.894 3.106 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.079 3.921 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.031 0.969 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.263 0.737 46 H 0.040 0.960 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -16.664 -7.023 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.077 4.077 6 C -0.151 4.151 7 C -0.161 4.161 8 C -0.123 4.123 9 H 0.117 0.883 10 C 0.295 3.705 11 O -0.433 6.433 12 N -0.322 5.322 13 C -0.062 4.062 14 C 0.155 3.845 15 H 0.087 0.913 16 C -0.198 4.198 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.136 4.136 20 N -0.522 5.522 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.048 4.048 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.853 -16.229 -6.600 19.629 hybrid contribution 0.513 0.605 0.181 0.814 sum -8.339 -15.624 -6.419 18.838 Atomic orbital electron populations 1.21743 0.95792 1.01579 1.01827 1.21544 0.95199 0.96538 1.02542 1.22121 0.87163 0.96992 1.00972 1.61907 1.07123 1.22926 1.34550 1.22162 0.95704 0.99553 0.90241 1.21571 0.94333 0.97297 1.01906 1.21838 1.01397 0.96292 0.96561 1.21272 0.95661 0.95476 0.99910 0.88332 1.20317 0.82834 0.90073 0.77253 1.90643 1.57100 1.43511 1.52067 1.48166 1.05173 1.10022 1.68805 1.21738 0.95377 0.88603 1.00476 1.18927 0.94245 0.77953 0.93359 0.91313 1.22005 0.99082 1.02254 0.96484 1.21284 1.36655 0.94253 1.04569 0.92203 1.24904 0.96373 0.95294 0.97058 1.69977 1.43228 0.97581 1.41427 0.86574 0.81138 0.77400 0.82682 1.20501 1.21222 1.19951 1.21779 0.93458 0.87769 1.01839 0.92674 0.92603 0.92936 0.92109 0.91135 0.90680 0.95026 0.95115 0.90725 0.90968 0.91470 0.89917 0.92002 0.93744 0.90352 0.92446 0.94974 0.96629 0.90642 0.92693 0.94156 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.06 5.87 -26.73 -0.16 -1.21 16 3 C 0.06 0.60 4.96 -3.83 -0.02 0.58 16 4 N -0.54 -6.69 4.65 -234.67 -1.09 -7.79 16 5 C 0.05 0.55 5.29 -3.83 -0.02 0.53 16 6 C -0.11 -1.17 6.09 -26.65 -0.16 -1.34 16 7 C -0.12 -1.59 4.90 -26.57 -0.13 -1.72 16 8 C -0.10 -1.59 1.88 -91.65 -0.17 -1.76 16 9 H 0.10 1.48 7.40 -51.93 -0.38 1.10 16 10 C 0.51 10.69 7.08 -10.98 -0.08 10.61 16 11 O -0.55 -13.96 15.31 5.56 0.09 -13.87 16 12 N -0.59 -12.64 2.75 -175.26 -0.48 -13.12 16 13 C 0.08 1.36 7.73 59.85 0.46 1.82 16 14 C 0.26 6.57 2.50 -69.08 -0.17 6.40 16 15 H 0.07 2.08 6.84 -51.93 -0.36 1.73 16 16 C -0.14 -3.31 9.12 37.16 0.34 -2.97 16 17 C -0.53 -14.39 8.01 -34.44 -0.28 -14.67 16 18 H 0.06 1.60 7.15 -52.49 -0.38 1.22 16 19 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 20 N -0.88 -25.59 12.17 55.43 0.67 -24.92 16 21 Si 0.89 21.11 29.55 -169.99 -5.02 16.09 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.08 1.21 4.03 -3.83 -0.02 1.19 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 6.44 -51.93 -0.33 0.17 16 30 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.07 0.83 7.98 -51.93 -0.41 0.41 16 32 H 0.03 0.34 8.12 -51.92 -0.42 -0.08 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.69 6.22 -51.93 -0.32 0.37 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.01 4.64 -51.93 -0.24 0.77 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.65 7.00 -51.93 -0.36 0.28 16 40 H 0.08 1.38 6.92 -51.93 -0.36 1.02 16 41 H 0.06 0.80 5.99 -51.93 -0.31 0.49 16 42 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 1.95 6.84 -51.93 -0.36 1.59 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.04 0.66 8.08 -51.93 -0.42 0.25 16 47 H 0.08 1.33 7.99 -51.93 -0.41 0.91 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -30.92 355.06 -9.02 -39.93 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.41 Total: -0.12 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.12 Total: -1.55 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.90 Total: -45.83 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.92 -9.02 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906564309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.111 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds