Wall clock time and date at job start Tue Mar 31 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46849 * 2 1 4 4 N 1.46902 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.46845 * 111.00564 * 294.21030 * 4 3 2 6 6 C 1.53027 * 109.52734 * 174.15969 * 5 4 3 7 7 C 1.53119 * 109.28036 * 59.18234 * 6 5 4 8 8 C 1.53126 * 109.15887 * 302.34481 * 7 6 5 9 9 H 1.09006 * 109.53365 * 297.69556 * 8 7 6 10 10 C 1.50699 * 109.50507 * 177.59389 * 8 7 6 11 11 O 1.21274 * 119.99925 * 240.19818 * 10 8 7 12 12 N 1.34778 * 119.99882 * 60.20002 * 10 8 7 13 13 C 1.46497 * 119.99801 * 359.97438 * 12 10 8 14 14 C 1.46500 * 119.99954 * 180.02562 * 12 10 8 15 15 H 1.09000 * 109.47175 * 359.97438 * 14 12 10 16 16 C 1.52997 * 109.47204 * 239.99638 * 14 12 10 17 17 C 1.50706 * 109.46953 * 119.99314 * 14 12 10 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99398 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 14 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.46849 * 111.00142 * 169.99953 * 4 3 2 26 26 H 1.08995 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46646 * 299.99789 * 1 2 3 28 28 H 1.08994 * 109.46842 * 59.99929 * 1 2 3 29 29 H 1.08998 * 109.47093 * 240.00126 * 2 1 3 30 30 H 1.09001 * 109.47487 * 120.00080 * 2 1 3 31 31 H 1.08998 * 109.47170 * 60.00173 * 3 2 1 32 32 H 1.08994 * 109.47456 * 299.99694 * 3 2 1 33 33 H 1.09003 * 109.45846 * 294.18225 * 5 4 3 34 34 H 1.09004 * 109.46108 * 54.15081 * 5 4 3 35 35 H 1.09002 * 109.50312 * 179.12318 * 6 5 4 36 36 H 1.09003 * 109.50811 * 299.20287 * 6 5 4 37 37 H 1.09000 * 109.52576 * 182.44369 * 7 6 5 38 38 H 1.09000 * 109.52453 * 62.24453 * 7 6 5 39 39 H 1.09004 * 109.47322 * 270.00331 * 13 12 10 40 40 H 1.08998 * 109.47658 * 30.00589 * 13 12 10 41 41 H 1.09003 * 109.46530 * 150.00726 * 13 12 10 42 42 H 1.09001 * 109.46922 * 179.97438 * 16 14 12 43 43 H 1.09000 * 109.47140 * 300.00127 * 16 14 12 44 44 H 1.09002 * 109.47045 * 60.00034 * 16 14 12 45 45 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46382 * 65.82034 * 25 4 3 47 47 H 1.09005 * 109.45199 * 305.85167 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0348 0.8805 1.2512 6 6 5.5576 0.7617 1.1581 7 6 6.1585 2.1476 0.9073 8 6 5.5583 2.7309 -0.3750 9 1 5.8218 2.0972 -1.2219 10 6 6.1000 4.1194 -0.5977 11 8 5.3429 5.0658 -0.6422 12 7 7.4259 4.3095 -0.7476 13 6 8.3404 3.1663 -0.6933 14 6 7.9526 5.6594 -0.9636 15 1 7.1291 6.3735 -0.9731 16 6 8.6878 5.7115 -2.3043 17 6 8.9086 6.0093 0.1477 18 1 9.1046 5.2973 0.9357 19 6 9.5338 7.2382 0.1576 20 7 10.3684 7.5433 1.1271 21 14 9.1954 8.4695 -1.2057 22 1 10.1649 8.2629 -2.3113 23 1 7.8142 8.2758 -1.7159 24 1 9.3377 9.8486 -0.6737 25 6 4.0354 2.7926 -0.2374 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.7716 1.5349 2.0823 34 1 3.6030 -0.1068 1.4155 35 1 5.9490 0.3591 2.0924 36 1 5.8213 0.0960 0.3362 37 1 7.2395 2.0615 0.7971 38 1 5.9280 2.8021 1.7478 39 1 8.6640 3.0083 0.3355 40 1 7.8288 2.2742 -1.0544 41 1 9.2091 3.3660 -1.3208 42 1 9.0793 6.7160 -2.4651 43 1 9.5112 4.9974 -2.2951 44 1 7.9963 5.4584 -3.1079 45 1 10.8086 8.4078 1.1339 46 1 3.7722 3.4380 0.6006 47 1 3.6039 3.1940 -1.1544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906564311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:40 Heat of formation + Delta-G solvation = -35.623381 kcal Electronic energy + Delta-G solvation = -23525.894373 eV Core-core repulsion = 20322.515512 eV Total energy + Delta-G solvation = -3203.378861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.05854 -38.30449 -35.55116 -35.05598 -32.89620 -31.94346 -31.13264 -29.92752 -26.54832 -26.19258 -25.15829 -24.20461 -23.02726 -21.68189 -20.68526 -19.72549 -18.30449 -17.03145 -16.23705 -16.08079 -15.55483 -15.45999 -14.89966 -14.42253 -14.34628 -13.99207 -13.91249 -13.56005 -13.11520 -12.98392 -12.75556 -12.55086 -12.24561 -12.16415 -12.02320 -11.93954 -11.68489 -11.62922 -11.28070 -11.20870 -11.11303 -11.03952 -10.74677 -10.62477 -10.45982 -10.20243 -10.09019 -9.64385 -9.32227 -8.91099 -8.63490 -8.35634 -7.70476 -6.14613 -4.14949 3.23226 3.28715 3.36898 3.39845 3.60104 4.04758 4.35371 4.67603 4.74166 4.83065 4.94085 5.01804 5.14532 5.16377 5.20911 5.27172 5.33684 5.43998 5.50419 5.54280 5.59178 5.70707 5.76762 5.79076 5.80814 5.92624 5.97237 5.98717 6.00168 6.04314 6.10008 6.17387 6.23144 6.28735 6.34563 6.43417 6.50836 6.85224 7.04732 7.04907 7.14453 7.36405 7.63876 8.20334 8.48632 8.85311 8.93443 9.46815 10.98214 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031735 B = 0.003797 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.098701 B = 7372.604021 C = 7708.957914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.541 5.541 5 C 0.050 3.950 6 C -0.113 4.113 7 C -0.125 4.125 8 C -0.099 4.099 9 H 0.099 0.901 10 C 0.511 3.489 11 O -0.556 6.556 12 N -0.585 5.585 13 C 0.085 3.915 14 C 0.229 3.771 15 H 0.062 0.938 16 C -0.161 4.161 17 C -0.526 4.526 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.896 5.896 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.263 1.263 24 H -0.294 1.294 25 C 0.079 3.921 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.033 0.967 45 H 0.265 0.735 46 H 0.042 0.958 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 -16.566 -2.638 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.077 4.077 6 C -0.151 4.151 7 C -0.163 4.163 8 C -0.121 4.121 9 H 0.117 0.883 10 C 0.298 3.702 11 O -0.435 6.435 12 N -0.316 5.316 13 C -0.058 4.058 14 C 0.127 3.873 15 H 0.080 0.920 16 C -0.219 4.219 17 C -0.564 4.564 18 H 0.096 0.904 19 C -0.128 4.128 20 N -0.534 5.534 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.188 1.188 24 H -0.222 1.222 25 C -0.049 4.049 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.606 -16.207 -2.968 20.746 hybrid contribution -0.115 1.283 0.045 1.289 sum -12.721 -14.924 -2.923 19.827 Atomic orbital electron populations 1.21743 0.95785 1.01602 1.01816 1.21545 0.95206 0.96512 1.02571 1.22119 0.87161 0.97021 1.00948 1.61913 1.07145 1.22545 1.34906 1.22173 0.95771 0.99568 0.90220 1.21569 0.94239 0.97232 1.02020 1.21838 1.01561 0.96309 0.96556 1.21240 0.95750 0.94921 1.00182 0.88323 1.20373 0.82558 0.90340 0.76932 1.90631 1.57240 1.43576 1.52064 1.47823 1.05214 1.09217 1.69328 1.21741 0.94428 0.87821 1.01829 1.19280 0.95032 0.79931 0.93100 0.92048 1.22459 1.00256 1.00962 0.98256 1.21164 1.24619 1.02006 1.08629 0.90382 1.24870 0.94434 0.97680 0.95800 1.69879 1.28594 1.22641 1.32244 0.86914 0.79559 0.80319 0.81881 1.20404 1.18818 1.22175 1.21780 0.93327 0.87979 1.01836 0.92652 0.92910 0.92642 0.91162 0.92041 0.94975 0.90754 0.94982 0.90679 0.91314 0.91026 0.89720 0.91666 0.92558 0.92331 0.91000 0.93188 0.92521 0.94806 0.92464 0.94000 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.01 5.86 -26.73 -0.16 -1.17 16 3 C 0.06 0.57 4.96 -3.82 -0.02 0.55 16 4 N -0.54 -6.45 4.66 -234.68 -1.09 -7.54 16 5 C 0.05 0.54 5.29 -3.84 -0.02 0.52 16 6 C -0.11 -1.19 6.09 -26.66 -0.16 -1.35 16 7 C -0.12 -1.66 4.90 -26.61 -0.13 -1.79 16 8 C -0.10 -1.48 1.88 -91.69 -0.17 -1.65 16 9 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 10 C 0.51 10.22 7.08 -10.99 -0.08 10.15 16 11 O -0.56 -13.24 15.31 5.56 0.09 -13.16 16 12 N -0.59 -12.01 2.75 -175.26 -0.48 -12.49 16 13 C 0.09 1.38 8.04 59.85 0.48 1.86 16 14 C 0.23 5.55 2.23 -69.08 -0.15 5.40 16 15 H 0.06 1.67 5.96 -51.93 -0.31 1.36 16 16 C -0.16 -3.49 8.65 37.16 0.32 -3.17 16 17 C -0.53 -14.59 8.95 -34.44 -0.31 -14.90 16 18 H 0.08 2.32 7.89 -52.49 -0.41 1.91 16 19 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 20 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 21 Si 0.88 22.02 24.37 -169.99 -4.14 17.88 16 22 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 23 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 C 0.08 1.14 4.03 -3.83 -0.02 1.13 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.77 7.99 -51.93 -0.41 0.36 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.69 6.21 -51.93 -0.32 0.37 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.10 4.63 -51.93 -0.24 0.86 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.91 7.01 -51.93 -0.36 0.55 16 40 H 0.06 0.74 5.99 -51.93 -0.31 0.43 16 41 H 0.07 1.16 6.43 -51.93 -0.33 0.82 16 42 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 43 H 0.06 1.13 6.66 -51.93 -0.35 0.79 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 47 H 0.08 1.20 7.99 -51.93 -0.42 0.79 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -31.85 346.52 -7.97 -39.82 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.19 Total: -0.32 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.14 Total: -3.11 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.80 Total: -46.33 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.85 -7.97 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906564311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.197 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds