Wall clock time and date at job start Tue Mar 31 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47420 * 2 1 4 4 N 1.46895 * 109.47414 * 179.97438 * 3 2 1 5 5 C 1.46850 * 110.99945 * 45.79200 * 4 3 2 6 6 C 1.53034 * 109.52564 * 185.83944 * 5 4 3 7 7 C 1.53120 * 109.27663 * 300.81923 * 6 5 4 8 8 C 1.53120 * 109.15972 * 57.65936 * 7 6 5 9 9 H 1.08992 * 109.50741 * 62.28338 * 8 7 6 10 10 C 1.50703 * 109.53674 * 182.38344 * 8 7 6 11 11 O 1.21281 * 120.00108 * 119.81816 * 10 8 7 12 12 N 1.34774 * 120.00032 * 299.82249 * 10 8 7 13 13 C 1.46504 * 119.99575 * 359.97438 * 12 10 8 14 14 C 1.46494 * 120.00416 * 180.02562 * 12 10 8 15 15 H 1.08998 * 109.46885 * 359.97438 * 14 12 10 16 16 C 1.52993 * 109.47517 * 119.99370 * 14 12 10 17 17 C 1.50698 * 109.47065 * 239.99959 * 14 12 10 18 18 H 1.07997 * 120.00252 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99961 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00307 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 120.00252 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.46859 * 59.99857 * 21 19 17 23 23 H 1.48497 * 109.47529 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47051 * 300.00195 * 21 19 17 25 25 C 1.46850 * 111.00333 * 170.00269 * 4 3 2 26 26 H 1.09002 * 109.47364 * 59.99582 * 1 2 3 27 27 H 1.08997 * 109.47518 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47033 * 299.99752 * 1 2 3 29 29 H 1.09001 * 109.47033 * 240.00248 * 2 1 3 30 30 H 1.08998 * 109.46884 * 120.00445 * 2 1 3 31 31 H 1.09001 * 109.46815 * 60.00115 * 3 2 1 32 32 H 1.09002 * 109.47193 * 300.00523 * 3 2 1 33 33 H 1.09007 * 109.46080 * 65.82377 * 5 4 3 34 34 H 1.09001 * 109.45527 * 305.85274 * 5 4 3 35 35 H 1.09000 * 109.50225 * 180.88431 * 6 5 4 36 36 H 1.08997 * 109.50202 * 60.76419 * 6 5 4 37 37 H 1.08996 * 109.52935 * 297.74895 * 7 6 5 38 38 H 1.09005 * 109.52152 * 177.55517 * 7 6 5 39 39 H 1.08992 * 109.47251 * 90.00763 * 13 12 10 40 40 H 1.09003 * 109.46811 * 210.00682 * 13 12 10 41 41 H 1.09000 * 109.47414 * 329.99934 * 13 12 10 42 42 H 1.08998 * 109.47332 * 300.00260 * 16 14 12 43 43 H 1.09006 * 109.47020 * 60.00523 * 16 14 12 44 44 H 1.09000 * 109.47426 * 179.97438 * 16 14 12 45 45 H 0.97004 * 120.00502 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.45831 * 54.14149 * 25 4 3 47 47 H 1.08998 * 109.45719 * 294.17998 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0357 0.4863 -0.9817 6 6 5.5585 0.4067 -0.8525 7 6 6.1592 1.7949 -1.0907 8 6 5.5583 2.7817 -0.0859 9 1 5.8211 2.4756 0.9266 10 6 6.0999 4.1629 -0.3504 11 8 5.3429 5.0675 -0.6325 12 7 7.4257 4.3930 -0.2737 13 6 8.3401 3.3004 0.0675 14 6 7.9522 5.7357 -0.5303 15 1 7.1289 6.4099 -0.7659 16 6 8.6865 6.2418 0.7129 17 6 8.9090 5.6862 -1.6935 18 1 9.1055 4.7483 -2.1916 19 6 9.5334 6.8384 -2.1220 20 7 9.2938 7.9807 -1.5158 21 14 10.7200 6.7770 -3.5635 22 1 10.0077 6.2849 -4.7702 23 1 11.2527 8.1383 -3.8245 24 1 11.8420 5.8590 -3.2423 25 6 4.0355 2.7925 -0.2374 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.7733 0.8167 -1.9869 34 1 3.6037 -0.4975 -0.7985 35 1 5.9505 -0.2912 -1.5923 36 1 5.8213 0.0632 0.1480 37 1 5.9296 2.1222 -2.1046 38 1 7.2402 1.7518 -0.9568 39 1 8.6645 2.7999 -0.8447 40 1 9.2082 3.7028 0.5896 41 1 7.8279 2.5857 0.7117 42 1 7.9945 6.2776 1.5542 43 1 9.5100 5.5675 0.9481 44 1 9.0787 7.2407 0.5218 45 1 9.7335 8.7912 -1.8170 46 1 3.6033 3.4835 0.4863 47 1 3.7730 3.1120 -1.2459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906564312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:43 Heat of formation + Delta-G solvation = -41.334301 kcal Electronic energy + Delta-G solvation = -23490.917114 eV Core-core repulsion = 20287.290609 eV Total energy + Delta-G solvation = -3203.626505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97214 -38.24989 -35.34281 -35.02647 -32.91905 -31.86873 -30.97004 -29.11382 -26.44240 -26.10190 -25.21244 -24.27141 -22.93770 -21.68773 -20.44407 -19.65685 -18.24558 -16.68186 -16.16976 -16.07296 -15.52611 -15.14442 -14.85913 -14.40855 -14.24509 -14.01671 -13.75972 -13.49413 -13.07486 -12.85592 -12.55721 -12.46946 -12.08283 -12.07966 -11.80027 -11.63793 -11.51649 -11.20565 -11.18309 -11.05392 -10.96291 -10.82367 -10.67378 -10.62126 -10.38767 -10.25120 -10.21467 -10.05685 -9.14562 -8.79600 -8.40354 -8.29744 -7.54301 -6.05411 -4.13408 3.28318 3.33404 3.34288 3.43984 3.70451 4.16970 4.41967 4.68889 4.78618 4.81017 4.97937 5.03719 5.13634 5.24716 5.25755 5.33797 5.37958 5.46179 5.54046 5.56742 5.62592 5.76240 5.79038 5.80697 5.85292 5.95553 6.00319 6.01927 6.05150 6.07899 6.10227 6.22869 6.37387 6.46331 6.79080 6.85104 7.07846 7.08871 7.10262 7.47385 7.55456 7.73969 8.04111 8.22433 8.57753 8.85647 9.10449 9.53144 10.99828 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030171 B = 0.003673 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.816916 B = 7621.047010 C = 7818.016534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.047 3.953 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.100 4.100 9 H 0.097 0.903 10 C 0.509 3.491 11 O -0.556 6.556 12 N -0.591 5.591 13 C 0.086 3.914 14 C 0.258 3.742 15 H 0.062 0.938 16 C -0.147 4.147 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.079 3.921 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.011 0.989 43 H 0.030 0.970 44 H 0.093 0.907 45 H 0.263 0.737 46 H 0.079 0.921 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 -16.810 3.855 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.081 4.081 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.122 4.122 9 H 0.115 0.885 10 C 0.295 3.705 11 O -0.435 6.435 12 N -0.322 5.322 13 C -0.058 4.058 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.206 4.206 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.049 4.049 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.049 0.951 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.917 -16.251 4.160 19.487 hybrid contribution 0.549 0.289 -1.596 1.712 sum -9.368 -15.961 2.564 18.684 Atomic orbital electron populations 1.21741 0.95658 1.01610 1.01910 1.21693 0.95617 0.96652 1.02550 1.22140 0.87215 0.96882 1.01007 1.61992 1.07026 1.07609 1.49868 1.22244 0.95697 0.96719 0.93424 1.21581 0.94354 0.96887 1.02290 1.21826 1.01466 0.93989 0.98895 1.21249 0.95653 0.93850 1.01475 0.88479 1.20327 0.82833 0.89540 0.77829 1.90636 1.57231 1.46166 1.49491 1.48183 1.05051 1.12271 1.66670 1.21690 0.94709 0.89910 0.99498 1.18915 0.94555 0.77643 0.93146 0.91977 1.22093 0.98401 1.03925 0.96138 1.21286 1.25565 0.94663 1.14816 0.92392 1.24894 0.96785 0.95253 0.96872 1.69871 1.43159 0.98911 1.40734 0.86564 0.81021 0.77106 0.82731 1.20289 1.21181 1.20241 1.21779 0.93441 0.88710 1.00943 0.92840 0.92660 0.92580 0.91733 0.91127 0.90666 0.94888 0.95086 0.90306 0.91444 0.91048 0.91823 0.89852 0.93120 0.91081 0.92626 0.96975 0.95114 0.88844 0.92659 0.90206 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.09 5.18 -26.73 -0.14 -1.23 16 3 C 0.06 0.59 5.27 -3.83 -0.02 0.57 16 4 N -0.54 -6.70 4.81 -234.67 -1.13 -7.83 16 5 C 0.05 0.52 4.85 -3.83 -0.02 0.50 16 6 C -0.11 -1.22 6.09 -26.65 -0.16 -1.38 16 7 C -0.12 -1.69 4.90 -26.61 -0.13 -1.82 16 8 C -0.10 -1.57 1.88 -91.69 -0.17 -1.75 16 9 H 0.10 1.41 7.40 -51.93 -0.38 1.03 16 10 C 0.51 10.67 7.08 -10.99 -0.08 10.59 16 11 O -0.56 -13.94 15.31 5.56 0.09 -13.86 16 12 N -0.59 -12.70 2.75 -175.27 -0.48 -13.18 16 13 C 0.09 1.44 8.05 59.85 0.48 1.92 16 14 C 0.26 6.66 2.63 -69.09 -0.18 6.48 16 15 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 16 C -0.15 -3.56 8.95 37.15 0.33 -3.23 16 17 C -0.52 -14.30 8.37 -34.44 -0.29 -14.59 16 18 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.08 1.20 4.00 -3.83 -0.02 1.19 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.54 6.21 -51.93 -0.32 0.21 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 34 H 0.08 0.74 5.81 -51.93 -0.30 0.43 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.10 4.63 -51.93 -0.24 0.86 16 39 H 0.05 0.82 7.01 -51.93 -0.36 0.45 16 40 H 0.07 1.21 6.42 -51.93 -0.33 0.88 16 41 H 0.06 0.75 5.99 -51.93 -0.31 0.44 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 44 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 47 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -30.67 352.25 -9.03 -39.70 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.30 Total: 0.25 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.12 Total: -1.81 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.98 Total: -45.76 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.67 -9.03 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906564312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.632 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds