Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 N 1.46898 * 109.47019 * 179.97438 * 3 2 1 5 5 C 1.46848 * 111.00123 * 66.04881 * 4 3 2 6 6 C 1.53034 * 109.52227 * 174.15922 * 5 4 3 7 7 C 1.53120 * 109.27913 * 59.17772 * 6 5 4 8 8 C 1.53122 * 109.21375 * 302.31032 * 7 6 5 9 9 H 1.08996 * 109.50388 * 297.74692 * 8 7 6 10 10 C 1.50700 * 109.50421 * 177.62655 * 8 7 6 11 11 O 1.21279 * 119.99914 * 251.78582 * 10 8 7 12 12 N 1.34779 * 119.99611 * 71.78058 * 10 8 7 13 13 C 1.46500 * 119.99671 * 184.51391 * 12 10 8 14 14 C 1.46494 * 120.00297 * 4.51399 * 12 10 8 15 15 H 1.09002 * 109.47067 * 357.07695 * 14 12 10 16 16 C 1.53007 * 109.46827 * 117.07417 * 14 12 10 17 17 C 1.50698 * 109.47220 * 237.06983 * 14 12 10 18 18 H 1.07996 * 120.00127 * 0.02562 * 17 14 12 19 19 C 1.37874 * 119.99760 * 179.97438 * 17 14 12 20 20 N 1.31511 * 120.00553 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99853 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.46941 * 90.00172 * 21 19 17 23 23 H 1.48501 * 109.47462 * 210.00091 * 21 19 17 24 24 H 1.48499 * 109.47129 * 330.00466 * 21 19 17 25 25 C 1.46842 * 111.00254 * 301.83329 * 4 3 2 26 26 H 1.08994 * 109.46996 * 60.00416 * 1 2 3 27 27 H 1.08999 * 109.46814 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47090 * 300.00133 * 1 2 3 29 29 H 1.09002 * 109.47090 * 239.99867 * 2 1 3 30 30 H 1.08997 * 109.46939 * 120.00113 * 2 1 3 31 31 H 1.09002 * 109.47212 * 59.99942 * 3 2 1 32 32 H 1.08997 * 109.47271 * 299.99910 * 3 2 1 33 33 H 1.08992 * 109.46417 * 54.13903 * 5 4 3 34 34 H 1.09006 * 109.44948 * 294.16612 * 5 4 3 35 35 H 1.08997 * 109.50926 * 299.23563 * 6 5 4 36 36 H 1.09006 * 109.53726 * 179.13389 * 6 5 4 37 37 H 1.08997 * 109.52348 * 62.24984 * 7 6 5 38 38 H 1.09002 * 109.52484 * 182.37289 * 7 6 5 39 39 H 1.09002 * 109.47582 * 95.38500 * 13 12 10 40 40 H 1.09003 * 109.47359 * 215.38934 * 13 12 10 41 41 H 1.09007 * 109.47142 * 335.38562 * 13 12 10 42 42 H 1.08994 * 109.47505 * 59.99869 * 16 14 12 43 43 H 1.09001 * 109.46687 * 180.02562 * 16 14 12 44 44 H 1.08998 * 109.46906 * 299.99875 * 16 14 12 45 45 H 0.96996 * 120.00667 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.46527 * 305.86050 * 25 4 3 47 47 H 1.08999 * 109.45951 * 65.83234 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0358 0.8857 -1.2520 6 6 5.5587 1.0347 -1.2773 7 6 6.1588 0.2974 -0.0769 8 6 5.5590 0.8632 1.2133 9 1 5.8222 1.9169 1.3055 10 6 6.1015 0.1030 2.3960 11 8 5.3846 -0.6620 3.0057 12 7 7.3833 0.2731 2.7760 13 6 7.9390 -0.5377 3.8623 14 6 8.2209 1.2688 2.1029 15 1 7.6554 1.7328 1.2948 16 6 8.6465 2.3408 3.1084 17 6 9.4452 0.5960 1.5377 18 1 9.5851 -0.4671 1.6666 19 6 10.3860 1.3375 0.8552 20 7 10.2154 2.6320 0.6977 21 14 11.9033 0.5034 0.1539 22 1 11.6215 0.0465 -1.2307 23 1 13.0341 1.4657 0.1371 24 1 12.2603 -0.6653 0.9977 25 6 4.0348 0.7195 1.1656 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6043 1.4214 -2.0974 34 1 3.7730 -0.1701 -1.3187 35 1 5.8220 2.0911 -1.2242 36 1 5.9514 0.6077 -2.2001 37 1 5.9288 -0.7655 -0.1501 38 1 7.2399 0.4362 -0.0675 39 1 8.4566 -1.4007 3.4434 40 1 8.6419 0.0621 4.4405 41 1 7.1320 -0.8779 4.5113 42 1 9.2119 1.8769 3.9166 43 1 9.2693 3.0819 2.6074 44 1 7.7610 2.8274 3.5172 45 1 10.8772 3.1535 0.2172 46 1 3.6025 1.1346 2.0761 47 1 3.7721 -0.3355 1.0872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906564314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = -48.480493 kcal Electronic energy + Delta-G solvation = -24046.009063 eV Core-core repulsion = 20842.072676 eV Total energy + Delta-G solvation = -3203.936387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90254 -38.23826 -35.54663 -34.72755 -32.63221 -31.63235 -30.75914 -29.14232 -26.68681 -25.98016 -25.30697 -23.32979 -23.05195 -21.58540 -21.15279 -19.18945 -18.10469 -16.57979 -16.41622 -15.59388 -15.28590 -14.90050 -14.68109 -14.47191 -14.19011 -14.03211 -13.75224 -13.20804 -12.98016 -12.70068 -12.58793 -12.34192 -11.94047 -11.74898 -11.64738 -11.57395 -11.42436 -11.36246 -11.26132 -11.02550 -10.88172 -10.77069 -10.59679 -10.41631 -10.27033 -10.23607 -10.13212 -9.90659 -9.32031 -8.84854 -8.52746 -8.06942 -7.59162 -6.17321 -4.25659 3.21407 3.29212 3.31476 3.41437 3.84027 4.24305 4.36449 4.86941 4.88398 5.09211 5.13607 5.18553 5.23828 5.34180 5.38808 5.50973 5.59087 5.63231 5.69243 5.76378 5.88462 5.93749 6.00203 6.03969 6.08535 6.15265 6.21446 6.26167 6.27286 6.34779 6.40987 6.48090 6.61331 6.72791 6.77919 6.80869 6.99532 7.20740 7.26100 7.27385 7.44383 7.67886 7.86680 8.12618 8.48662 8.76974 9.04179 9.42669 10.87143 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.004879 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.642873 B = 5737.055480 C = 6398.307437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 C 0.058 3.942 4 N -0.538 5.538 5 C 0.054 3.946 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.097 4.097 9 H 0.101 0.899 10 C 0.515 3.485 11 O -0.580 6.580 12 N -0.590 5.590 13 C 0.095 3.905 14 C 0.250 3.750 15 H 0.061 0.939 16 C -0.152 4.152 17 C -0.527 4.527 18 H 0.061 0.939 19 C 0.068 3.932 20 N -0.886 5.886 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.078 3.922 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.095 0.905 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.073 0.927 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 -1.422 -2.820 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C -0.071 4.071 4 N -0.260 5.260 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.119 4.119 9 H 0.119 0.881 10 C 0.302 3.698 11 O -0.462 6.462 12 N -0.320 5.320 13 C -0.048 4.048 14 C 0.150 3.850 15 H 0.078 0.922 16 C -0.211 4.211 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.050 4.050 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.113 0.887 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.862 -1.139 -2.547 12.185 hybrid contribution 0.789 -1.216 -0.436 1.514 sum -11.073 -2.355 -2.982 11.707 Atomic orbital electron populations 1.21673 0.95634 1.01445 1.01634 1.22242 0.96460 0.99401 1.02554 1.22215 0.87214 0.95123 1.02498 1.62089 1.06578 1.54720 1.02657 1.22138 0.96130 0.97379 0.91750 1.21556 0.93546 1.01935 0.98037 1.21643 1.02901 0.98680 0.92125 1.21211 0.94902 1.01651 0.94093 0.88119 1.20451 0.82005 0.82410 0.84902 1.90568 1.58537 1.40219 1.56919 1.48222 1.10730 1.38244 1.34767 1.21351 0.98249 0.95130 0.90086 1.19161 0.89939 0.85026 0.90908 0.92156 1.22139 0.99237 1.00741 0.98976 1.21304 1.05074 0.94971 1.35244 0.92093 1.24861 0.98045 0.94791 0.95746 1.69852 1.35827 1.05461 1.41252 0.86535 0.82382 0.79290 0.79483 1.20553 1.21129 1.19918 1.21839 0.93622 0.96834 0.92734 0.92881 0.93014 0.92696 0.92003 0.91361 0.90809 0.90950 0.91204 0.94963 0.90706 0.91496 0.92737 0.88261 0.93545 0.91704 0.92125 0.94898 0.88685 0.96891 0.92578 0.90894 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.17 -1.85 5.24 -26.73 -0.14 -1.99 16 3 C 0.06 0.67 5.36 -3.83 -0.02 0.65 16 4 N -0.54 -7.63 4.86 -234.59 -1.14 -8.77 16 5 C 0.05 0.72 5.05 -3.83 -0.02 0.70 16 6 C -0.11 -1.68 6.09 -26.65 -0.16 -1.85 16 7 C -0.12 -2.04 4.94 -26.61 -0.13 -2.17 16 8 C -0.10 -1.78 1.82 -91.62 -0.17 -1.95 16 9 H 0.10 1.93 6.98 -51.93 -0.36 1.57 16 10 C 0.51 10.84 6.92 -10.98 -0.08 10.76 16 11 O -0.58 -13.23 15.46 5.56 0.09 -13.15 16 12 N -0.59 -12.68 2.75 -175.26 -0.48 -13.16 16 13 C 0.10 1.87 9.72 59.85 0.58 2.45 16 14 C 0.25 5.75 1.80 -69.08 -0.12 5.62 16 15 H 0.06 1.44 4.60 -51.93 -0.24 1.20 16 16 C -0.15 -3.44 8.99 37.16 0.33 -3.11 16 17 C -0.53 -13.16 7.90 -34.44 -0.27 -13.43 16 18 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 19 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -22.97 11.32 55.43 0.63 -22.34 16 21 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.08 1.27 3.51 -3.77 -0.01 1.25 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.70 6.68 -51.93 -0.35 0.35 16 30 H 0.07 0.87 6.50 -51.93 -0.34 0.53 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.75 8.06 -51.93 -0.42 0.34 16 33 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 34 H 0.03 0.43 6.76 -51.93 -0.35 0.08 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 2.03 5.98 -51.93 -0.31 1.72 16 39 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 40 H 0.06 1.22 6.60 -51.93 -0.34 0.87 16 41 H 0.06 1.15 7.22 -51.92 -0.37 0.78 16 42 H 0.03 0.71 6.79 -51.93 -0.35 0.36 16 43 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 46 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 47 H 0.04 0.76 6.41 -51.93 -0.33 0.43 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -26.81 351.28 -8.81 -35.62 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.24 Total: 3.93 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 0.06 Total: -2.38 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.99 Total: -44.27 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.81 -8.81 -35.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906564314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.864 kcal (2) G-P(sol) polarization free energy of solvation -26.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds