Wall clock time and date at job start Tue Mar 31 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47307 * 2 1 4 4 C 1.50701 * 109.46918 * 240.00641 * 2 1 3 5 5 O 1.21281 * 120.00232 * 23.63666 * 4 2 1 6 6 N 1.34774 * 120.00167 * 203.64044 * 4 2 1 7 7 C 1.46503 * 120.00062 * 185.00782 * 6 4 2 8 8 C 1.53001 * 109.46971 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46872 * 180.02562 * 8 7 6 10 10 C 1.50708 * 109.47051 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00022 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00151 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99986 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47386 * 90.00017 * 14 12 10 16 16 H 1.48495 * 109.47384 * 210.00050 * 14 12 10 17 17 H 1.48496 * 109.47310 * 329.99907 * 14 12 10 18 18 N 1.46895 * 109.47468 * 120.00575 * 2 1 3 19 19 C 1.46844 * 111.00195 * 62.16572 * 18 2 1 20 20 C 1.53040 * 109.52241 * 174.16300 * 19 18 2 21 21 C 1.53117 * 109.27927 * 59.17746 * 20 19 18 22 22 C 1.53115 * 109.15882 * 302.34213 * 21 20 19 23 23 C 1.46845 * 110.99987 * 297.95151 * 18 2 1 24 24 H 1.09004 * 109.46517 * 299.99474 * 1 2 3 25 25 H 1.09002 * 109.47187 * 59.99200 * 1 2 3 26 26 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47208 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47217 * 300.00832 * 3 2 1 29 29 H 1.09001 * 109.47145 * 60.00303 * 3 2 1 30 30 H 0.96999 * 119.99808 * 5.00546 * 6 4 2 31 31 H 1.08998 * 109.46852 * 299.99571 * 7 6 4 32 32 H 1.08994 * 109.47010 * 60.00010 * 7 6 4 33 33 H 1.08998 * 109.46821 * 299.99393 * 8 7 6 34 34 H 1.08994 * 109.47406 * 60.00055 * 8 7 6 35 35 H 1.09002 * 109.47120 * 299.99015 * 9 8 7 36 36 H 1.08993 * 109.47794 * 59.99739 * 9 8 7 37 37 H 0.96999 * 120.00461 * 179.97438 * 13 12 10 38 38 H 1.08991 * 109.46425 * 54.14318 * 19 18 2 39 39 H 1.09003 * 109.45789 * 294.17504 * 19 18 2 40 40 H 1.09010 * 109.49942 * 179.11828 * 20 19 18 41 41 H 1.09000 * 109.49901 * 299.22979 * 20 19 18 42 42 H 1.09002 * 109.52451 * 62.25234 * 21 20 19 43 43 H 1.08998 * 109.52197 * 182.43763 * 21 20 19 44 44 H 1.09003 * 109.50272 * 177.59719 * 22 21 20 45 45 H 1.08996 * 109.50391 * 297.71593 * 22 21 20 46 46 H 1.09000 * 109.46106 * 65.82628 * 23 18 2 47 47 H 1.09000 * 109.46343 * 305.85759 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.3272 -0.7917 -2.2140 6 7 3.2650 -1.2551 -1.2382 7 6 3.7958 -1.8488 -2.4679 8 6 5.2020 -2.3919 -2.2062 9 6 5.7566 -3.0114 -3.4905 10 6 7.1416 -3.5469 -3.2326 11 1 7.5822 -3.4542 -2.2510 12 6 7.8460 -4.1551 -4.2499 13 7 9.0547 -4.6219 -4.0250 14 14 7.0836 -4.3160 -5.9476 15 1 7.4269 -3.1211 -6.7598 16 1 7.6099 -5.5346 -6.6131 17 1 5.6078 -4.4201 -5.8196 18 7 2.0197 -0.6926 1.1993 19 6 1.5917 -2.0972 1.2075 20 6 2.2379 -2.8219 2.3905 21 6 1.8211 -2.1341 3.6935 22 6 2.2355 -0.6612 3.6392 23 6 1.5893 0.0009 2.4201 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.8007 -1.2541 -0.4296 31 1 3.1460 -2.6633 -2.7880 32 1 3.8386 -1.0897 -3.2488 33 1 5.8521 -1.5777 -1.8859 34 1 5.1589 -3.1511 -1.4254 35 1 5.1067 -3.8255 -3.8113 36 1 5.7999 -2.2519 -4.2711 37 1 9.5502 -5.0501 -4.7406 38 1 1.8979 -2.5757 0.2773 39 1 0.5067 -2.1457 1.3007 40 1 1.9077 -3.8606 2.4054 41 1 3.3228 -2.7857 2.2907 42 1 0.7399 -2.2043 3.8127 43 1 2.3136 -2.6203 4.5356 44 1 1.9036 -0.1560 4.5462 45 1 3.3203 -0.5910 3.5591 46 1 0.5044 -0.0575 2.5075 47 1 1.8939 1.0463 2.3705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906570021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:29 Heat of formation + Delta-G solvation = -76.535476 kcal Electronic energy + Delta-G solvation = -23323.095936 eV Core-core repulsion = 20117.942993 eV Total energy + Delta-G solvation = -3205.152942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73432 -39.52027 -37.08266 -35.93904 -35.13514 -33.24279 -31.92579 -31.26836 -29.15637 -28.26942 -25.92749 -24.78087 -23.86663 -22.79856 -22.20750 -20.84079 -19.92475 -18.95087 -18.40957 -17.07950 -16.94303 -16.35243 -16.22725 -15.77596 -15.43046 -15.34316 -15.06946 -14.95344 -14.79214 -14.51695 -14.15704 -13.80900 -13.74205 -13.42057 -13.38105 -12.99445 -12.90395 -12.74338 -12.69827 -12.65764 -12.38095 -11.94222 -11.89286 -11.78205 -11.60672 -11.56810 -11.36681 -11.32886 -11.14776 -10.76307 -10.70288 -10.04122 -9.35899 -8.29319 -6.33152 1.36379 1.38041 1.49900 1.55302 2.22105 2.36196 2.73538 3.06324 3.56118 3.84350 3.90828 3.97596 4.03719 4.10732 4.14318 4.18811 4.35214 4.41520 4.49812 4.51231 4.62642 4.67941 4.68803 4.76225 4.79945 4.86392 4.87326 4.91865 4.97343 5.02748 5.07455 5.11998 5.14184 5.22507 5.28901 5.37064 5.40800 5.50672 5.53690 5.54770 5.64839 5.92917 6.09009 6.27711 6.60676 6.74742 7.23830 7.31600 8.87184 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021444 B = 0.003662 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.401947 B = 7643.375776 C = 8394.933905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 C -0.135 4.135 4 C 0.521 3.479 5 O -0.588 6.588 6 N -0.706 5.706 7 C 0.125 3.875 8 C -0.098 4.098 9 C -0.011 4.011 10 C -0.530 4.530 11 H 0.037 0.963 12 C 0.006 3.994 13 N -0.950 5.950 14 Si 0.947 3.053 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.249 1.249 18 N -0.526 5.526 19 C 0.047 3.953 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.113 4.113 23 C 0.049 3.951 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.416 0.584 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.266 0.734 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.088 11.443 16.749 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.003 3.997 3 C -0.193 4.193 4 C 0.307 3.693 5 O -0.468 6.468 6 N -0.358 5.358 7 C 0.001 3.999 8 C -0.136 4.136 9 C -0.049 4.049 10 C -0.568 4.568 11 H 0.055 0.945 12 C -0.191 4.191 13 N -0.591 5.591 14 Si 0.770 3.230 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.173 1.173 18 N -0.252 5.252 19 C -0.081 4.081 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.078 4.078 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.900 11.312 15.952 27.197 hybrid contribution -0.302 -0.627 -0.742 1.017 sum -19.202 10.685 15.211 26.726 Atomic orbital electron populations 1.22225 0.93998 1.02331 1.03521 1.21238 0.94785 0.95939 0.87692 1.21886 1.02337 0.91272 1.03797 1.20923 0.81118 0.77750 0.89460 1.90672 1.57530 1.60823 1.37756 1.46059 1.17125 1.58291 1.14286 1.21312 0.94579 0.97149 0.86847 1.21450 0.93343 0.99958 0.98805 1.19459 0.94414 0.95884 0.95125 1.21450 1.00557 1.37379 0.97436 0.94455 1.25962 0.95063 0.94605 1.03454 1.70054 1.13109 1.41105 1.34790 0.85706 0.80067 0.78045 0.79145 1.19172 1.20942 1.17307 1.62190 1.59577 1.01940 1.01494 1.22195 0.97989 0.88628 0.99318 1.21564 1.01062 0.98696 0.93922 1.21570 1.01020 0.96087 0.96945 1.21586 1.01256 0.95218 0.97059 1.22324 0.98192 0.99039 0.88256 0.89286 0.91958 0.93318 0.91258 0.91957 0.88577 0.74601 0.92806 0.92370 0.91825 0.92017 0.96236 0.96199 0.92487 0.92704 0.94318 0.91337 0.91640 0.92015 0.91113 0.89807 0.91522 0.93823 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 7.31 71.98 0.53 -2.56 16 2 C 0.10 1.94 0.64 2.78 0.00 1.94 16 3 C -0.14 -2.20 8.17 71.98 0.59 -1.61 16 4 C 0.52 14.97 5.31 87.66 0.47 15.43 16 5 O -0.59 -21.55 16.08 -3.03 -0.05 -21.60 16 6 N -0.71 -19.98 4.72 -463.06 -2.18 -22.16 16 7 C 0.13 4.18 5.68 86.38 0.49 4.67 16 8 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 9 C -0.01 -0.51 4.04 29.85 0.12 -0.38 16 10 C -0.53 -30.48 9.66 25.60 0.25 -30.23 16 11 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 12 C 0.01 0.36 5.47 84.65 0.46 0.82 16 13 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 14 Si 0.95 44.80 27.47 68.60 1.88 46.69 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 17 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 18 N -0.53 -9.14 3.73 -851.09 -3.17 -12.31 16 19 C 0.05 0.90 4.62 86.33 0.40 1.30 16 20 C -0.11 -1.91 6.09 30.65 0.19 -1.72 16 21 C -0.12 -1.50 6.00 30.67 0.18 -1.32 16 22 C -0.11 -1.29 6.09 30.65 0.19 -1.10 16 23 C 0.05 0.60 4.66 86.33 0.40 1.01 16 24 H 0.09 1.21 6.58 -2.38 -0.02 1.20 16 25 H 0.06 1.34 7.88 -2.39 -0.02 1.32 16 26 H 0.05 1.04 6.58 -2.39 -0.02 1.02 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.04 6.24 -2.39 -0.01 1.03 16 30 H 0.42 10.47 7.76 -92.71 -0.72 9.75 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 36 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.05 1.33 6.31 -2.39 -0.02 1.32 16 39 H 0.04 0.74 6.67 -2.39 -0.02 0.72 16 40 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.04 0.51 6.66 -2.39 -0.02 0.50 16 47 H 0.09 0.94 5.95 -2.39 -0.01 0.93 16 Total: -1.00 -69.00 355.12 1.36 -67.64 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.16 Total: 18.41 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.42 Total: -17.26 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -5.06 Total: -93.87 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -69.00 1.36 -67.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906570021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.897 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds