Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46874 * 2 1 4 4 N 1.46902 * 109.47067 * 180.02562 * 3 2 1 5 5 C 1.46846 * 111.00204 * 66.04388 * 4 3 2 6 6 C 1.53032 * 109.52260 * 185.84105 * 5 4 3 7 7 C 1.53124 * 109.28012 * 300.82015 * 6 5 4 8 8 C 1.53119 * 109.15841 * 57.65244 * 7 6 5 9 9 H 1.09004 * 109.50189 * 62.29271 * 8 7 6 10 10 C 1.50703 * 109.50603 * 182.36623 * 8 7 6 11 11 O 1.21286 * 120.00158 * 119.99820 * 10 8 7 12 12 N 1.34775 * 120.00062 * 300.00617 * 10 8 7 13 13 C 1.46494 * 119.99921 * 179.97438 * 12 10 8 14 14 C 1.53008 * 109.47059 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47439 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47535 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00100 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00009 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99884 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47402 * 89.99788 * 20 18 16 22 22 H 1.48495 * 109.46979 * 209.99940 * 20 18 16 23 23 H 1.48502 * 109.47197 * 329.99403 * 20 18 16 24 24 C 1.46846 * 110.99617 * 190.25493 * 4 3 2 25 25 H 1.08995 * 109.47299 * 60.00238 * 1 2 3 26 26 H 1.09007 * 109.46385 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47074 * 299.99859 * 1 2 3 28 28 H 1.09001 * 109.47074 * 240.00140 * 2 1 3 29 29 H 1.08995 * 109.47299 * 119.99762 * 2 1 3 30 30 H 1.09001 * 109.47155 * 60.00190 * 3 2 1 31 31 H 1.09004 * 109.46871 * 300.00239 * 3 2 1 32 32 H 1.09001 * 109.45990 * 305.85570 * 5 4 3 33 33 H 1.08999 * 109.46398 * 65.83493 * 5 4 3 34 34 H 1.08999 * 109.50710 * 60.75864 * 6 5 4 35 35 H 1.08996 * 109.50945 * 180.88041 * 6 5 4 36 36 H 1.08998 * 109.52523 * 177.55876 * 7 6 5 37 37 H 1.08999 * 109.52008 * 297.75553 * 7 6 5 38 38 H 0.97004 * 119.99766 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.47250 * 299.99422 * 13 12 10 40 40 H 1.08993 * 109.47652 * 59.99998 * 13 12 10 41 41 H 1.08998 * 109.46677 * 299.99846 * 14 13 12 42 42 H 1.09003 * 109.46810 * 59.99560 * 14 13 12 43 43 H 1.09003 * 109.47283 * 300.00405 * 15 14 13 44 44 H 1.09004 * 109.46855 * 59.99472 * 15 14 13 45 45 H 0.97008 * 119.99693 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.46231 * 294.17554 * 24 4 3 47 47 H 1.09004 * 109.46418 * 54.14394 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0348 0.8862 -1.2537 6 6 5.5576 0.7670 -1.1611 7 6 6.1584 2.1518 -0.9041 8 6 5.5582 2.7294 0.3807 9 1 5.8218 2.0915 1.2243 10 6 6.1005 4.1166 0.6102 11 8 5.3436 5.0628 0.6625 12 7 7.4268 4.3058 0.7573 13 6 7.9541 5.6543 0.9798 14 6 9.4770 5.5909 1.1132 15 6 10.0278 6.9993 1.3450 16 6 11.5277 6.9368 1.4769 17 1 12.0371 5.9873 1.4033 18 6 12.2495 8.0915 1.6927 19 7 11.6291 9.2476 1.7829 20 14 14.1088 8.0140 1.8556 21 1 14.7301 8.1715 0.5160 22 1 14.5734 9.1061 2.7482 23 1 14.5010 6.7029 2.4321 24 6 4.0352 2.7917 0.2434 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.6029 -0.1003 -1.4225 33 1 3.7718 1.5443 -2.0819 34 1 5.8212 0.0983 -0.3418 35 1 5.9492 0.3687 -2.0971 36 1 7.2394 2.0653 -0.7943 37 1 5.9279 2.8101 -1.7417 38 1 8.0322 3.5490 0.7157 39 1 7.6892 6.2918 0.1364 40 1 7.5265 6.0653 1.8943 41 1 9.7416 4.9535 1.9569 42 1 9.9049 5.1797 0.1989 43 1 9.7632 7.6364 0.5011 44 1 9.5998 7.4109 2.2591 45 1 12.1371 10.0601 1.9344 46 1 3.7720 3.4407 -0.5917 47 1 3.6037 3.1892 1.1621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906570245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -73.048576 kcal Electronic energy + Delta-G solvation = -22003.282179 eV Core-core repulsion = 18798.280439 eV Total energy + Delta-G solvation = -3205.001739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26028 -38.55240 -35.45341 -35.20908 -33.33525 -32.28826 -31.48735 -30.81938 -26.96314 -26.48660 -24.51280 -23.34901 -22.74217 -21.45428 -20.70504 -20.29328 -19.47384 -17.15130 -16.43493 -16.12544 -15.71558 -15.42244 -15.26598 -14.80776 -14.51608 -14.45732 -14.21143 -14.10693 -13.54664 -13.34393 -12.95425 -12.80382 -12.29100 -12.20860 -11.98603 -11.85586 -11.73906 -11.65052 -11.44663 -11.30298 -10.92877 -10.90420 -10.76068 -10.71362 -10.62691 -10.56785 -9.87115 -9.78194 -9.33041 -9.11172 -8.76699 -8.58167 -8.37818 -6.02338 -4.05489 2.78745 3.24092 3.30353 3.36789 3.39659 3.76556 4.42966 4.44196 4.47598 4.61224 4.68471 4.75359 4.94254 4.98681 5.02537 5.13536 5.23980 5.27784 5.33398 5.33652 5.41576 5.46614 5.49722 5.65300 5.67352 5.70730 5.73403 5.76635 5.78544 5.84748 5.92014 5.94191 6.07008 6.16257 6.49793 6.59673 6.81100 6.82594 6.83840 7.00211 7.62920 7.72247 7.75493 7.96355 8.36543 8.41540 9.01168 9.58698 11.08907 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047548 B = 0.002321 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.732777 B =12058.570359 C =12459.265152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.050 3.950 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.103 4.103 9 H 0.104 0.896 10 C 0.513 3.487 11 O -0.547 6.547 12 N -0.724 5.724 13 C 0.116 3.884 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.078 3.922 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.042 0.958 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.101 -20.679 -5.654 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.078 4.078 6 C -0.152 4.152 7 C -0.151 4.151 8 C -0.125 4.125 9 H 0.122 0.878 10 C 0.298 3.702 11 O -0.424 6.424 12 N -0.375 5.375 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.051 4.051 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.451 -20.077 -5.200 27.759 hybrid contribution 1.135 0.318 -0.561 1.305 sum -17.316 -19.759 -5.761 26.897 Atomic orbital electron populations 1.21743 0.95659 1.01724 1.01852 1.21548 0.95335 0.96365 1.02621 1.22136 0.86835 0.97218 1.01048 1.61898 1.07422 1.22464 1.34691 1.22179 0.95571 0.99881 0.90168 1.21577 0.94402 0.96922 1.02335 1.21589 1.00309 0.96855 0.96382 1.21312 0.96327 0.94352 1.00525 0.87760 1.20516 0.82571 0.90701 0.76414 1.90696 1.57522 1.43515 1.50697 1.46210 1.07104 1.11243 1.72904 1.21641 0.95731 0.81964 1.01342 1.21885 0.90860 1.02315 1.00790 1.19032 0.95566 0.89422 0.97404 1.21203 0.92067 0.93335 1.49468 0.92641 1.25036 0.98593 0.95534 0.95354 1.69969 1.35589 0.98127 1.49567 0.86575 0.85639 0.77688 0.77969 1.20669 1.21200 1.19894 1.21783 0.92915 0.88326 1.02026 0.92890 0.92565 0.92590 0.92039 0.91090 0.90625 0.94890 0.90426 0.94923 0.90749 0.91103 0.90909 0.91588 0.76804 0.91858 0.91804 0.92716 0.92761 0.96302 0.96274 0.92930 0.93982 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.81 5.87 -26.73 -0.16 -0.97 16 3 C 0.06 0.46 4.96 -3.82 -0.02 0.44 16 4 N -0.54 -5.04 4.65 -234.66 -1.09 -6.13 16 5 C 0.05 0.40 5.29 -3.84 -0.02 0.38 16 6 C -0.11 -0.86 6.09 -26.65 -0.16 -1.02 16 7 C -0.11 -1.02 5.16 -26.61 -0.14 -1.16 16 8 C -0.10 -1.12 2.69 -91.69 -0.25 -1.37 16 9 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 10 C 0.51 7.52 7.16 -10.98 -0.08 7.44 16 11 O -0.55 -10.25 15.99 5.55 0.09 -10.16 16 12 N -0.72 -10.31 5.46 -60.30 -0.33 -10.64 16 13 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 14 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 15 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.08 0.87 4.04 -3.83 -0.02 0.85 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 6.44 -51.93 -0.33 0.06 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.63 7.98 -51.93 -0.41 0.22 16 31 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.08 0.54 6.22 -51.93 -0.32 0.22 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.40 4.56 7.94 -40.82 -0.32 4.23 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 47 H 0.08 0.99 7.99 -51.93 -0.41 0.58 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -31.78 370.50 -10.15 -41.92 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.93 Total: -1.60 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.18 Total: -9.33 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.69 Total: -42.90 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.78 -10.15 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906570245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.126 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds