Wall clock time and date at job start Tue Mar 31 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46863 * 85.00638 * 16 14 13 18 18 C 1.53002 * 109.47235 * 204.99955 * 16 14 13 19 19 N 1.46896 * 109.47282 * 325.00274 * 16 14 13 20 20 C 1.46844 * 110.99893 * 304.20487 * 19 16 14 21 21 C 1.53041 * 109.51983 * 174.16049 * 20 19 16 22 22 C 1.53125 * 109.27857 * 59.18554 * 21 20 19 23 23 C 1.53116 * 109.15831 * 302.34166 * 22 21 20 24 24 C 1.46848 * 110.99707 * 180.02562 * 19 16 14 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 1.08992 * 109.47514 * 59.99554 * 17 16 14 33 33 H 1.09004 * 109.47086 * 179.97438 * 17 16 14 34 34 H 1.09001 * 109.47109 * 299.99368 * 17 16 14 35 35 H 1.09000 * 109.46986 * 60.00230 * 18 16 14 36 36 H 1.08996 * 109.47407 * 180.02562 * 18 16 14 37 37 H 1.09002 * 109.47070 * 300.00401 * 18 16 14 38 38 H 1.08999 * 109.46940 * 294.17854 * 20 19 16 39 39 H 1.09004 * 109.45933 * 54.15050 * 20 19 16 40 40 H 1.09003 * 109.50508 * 299.24230 * 21 20 19 41 41 H 1.09005 * 109.49966 * 179.12700 * 21 20 19 42 42 H 1.08994 * 109.51959 * 182.44144 * 22 21 20 43 43 H 1.08993 * 109.52088 * 62.24745 * 22 21 20 44 44 H 1.09003 * 109.50612 * 297.71933 * 23 22 21 45 45 H 1.09002 * 109.50397 * 177.59645 * 23 22 21 46 46 H 1.09001 * 109.46416 * 305.85204 * 24 19 16 47 47 H 1.08993 * 109.46842 * 65.81898 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 6 0.5464 4.7802 2.6553 18 6 -1.4885 3.3360 2.7802 19 7 0.6219 2.6108 3.7891 20 6 0.2331 1.1950 3.7639 21 6 0.9745 0.4414 4.8705 22 6 0.6253 1.0618 6.2262 23 6 0.9955 2.5474 6.2093 24 6 0.2530 3.2397 5.0638 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 0.1120 5.3195 1.8137 33 1 0.2575 5.2674 3.5867 34 1 1.6327 4.7815 2.5660 35 1 -1.8519 2.3084 2.7798 36 1 -1.7770 3.8234 3.7115 37 1 -1.9229 3.8754 1.9385 38 1 -0.8417 1.1105 3.9243 39 1 0.4908 0.7648 2.7961 40 1 2.0492 0.5138 4.7031 41 1 0.6741 -0.6064 4.8615 42 1 1.1847 0.5560 7.0131 43 1 -0.4435 0.9548 6.4112 44 1 2.0705 2.6530 6.0629 45 1 0.7100 3.0044 7.1568 46 1 0.5251 4.2949 5.0404 47 1 -0.8219 3.1453 5.2178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:58 Heat of formation + Delta-G solvation = -48.396162 kcal Electronic energy + Delta-G solvation = -24715.607015 eV Core-core repulsion = 21511.674284 eV Total energy + Delta-G solvation = -3203.932730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32076 -38.08229 -35.35331 -34.51291 -32.27165 -30.94896 -30.76915 -30.14242 -27.25498 -26.91061 -24.57832 -23.42525 -22.73097 -21.77012 -19.86743 -19.40501 -18.69595 -17.29926 -16.12775 -15.39743 -15.34139 -14.73179 -14.45909 -14.33244 -14.18722 -14.02409 -13.50413 -13.35682 -13.23870 -12.65087 -12.55700 -12.20425 -11.89485 -11.85280 -11.73452 -11.62237 -11.39494 -11.20072 -11.15585 -10.94946 -10.87067 -10.77695 -10.70681 -10.33617 -10.25991 -10.22497 -10.10582 -9.59396 -8.98592 -8.80837 -8.44221 -8.20580 -7.66860 -6.07320 -4.15833 3.27296 3.34253 3.36637 3.42048 3.93599 4.16040 4.42548 4.79991 4.85200 4.93246 5.06215 5.22620 5.24879 5.31832 5.39772 5.49417 5.52721 5.62347 5.69706 5.70813 5.81471 5.87921 5.92256 5.96411 6.00794 6.09851 6.15306 6.19837 6.31248 6.34910 6.41191 6.45511 6.50050 6.69293 7.06481 7.09331 7.18977 7.25277 7.42668 7.56393 7.69220 7.82226 7.97716 8.23979 8.81378 8.85693 9.27307 9.52237 10.98005 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018230 B = 0.005580 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.556418 B = 5016.680198 C = 5392.233638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.269 3.731 4 H 0.046 0.954 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.695 5.695 14 C 0.515 3.485 15 O -0.553 6.553 16 C 0.087 3.913 17 C -0.134 4.134 18 C -0.163 4.163 19 N -0.521 5.521 20 C 0.042 3.958 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.115 4.115 24 C 0.051 3.949 25 H 0.021 0.979 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 3.800 15.578 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.064 0.936 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.342 5.342 14 C 0.299 3.701 15 O -0.432 6.432 16 C -0.006 4.006 17 C -0.192 4.192 18 C -0.222 4.222 19 N -0.247 5.247 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.077 4.077 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.794 3.686 14.638 16.169 hybrid contribution 0.370 -0.133 0.314 0.503 sum -5.424 3.554 14.952 16.298 Atomic orbital electron populations 1.21866 0.98530 0.97872 1.01194 1.21922 0.92399 0.99959 1.02196 1.18763 0.94114 0.89100 0.81346 0.93580 1.21246 0.90821 1.38619 1.06095 0.92104 1.24877 0.98435 0.94937 0.95433 1.69897 1.35008 1.37870 1.09365 0.86487 0.85146 0.78423 0.77276 1.20612 1.21173 1.19879 1.46499 1.14719 1.54702 1.18313 1.19944 0.82997 0.79087 0.88093 1.90666 1.51995 1.60126 1.40422 1.21353 0.93728 0.95386 0.90152 1.21815 1.02448 0.92950 1.02009 1.22209 0.95321 1.02595 1.02058 1.62138 1.58785 1.02195 1.01542 1.22332 0.97313 0.88020 1.00944 1.21563 1.01622 0.98419 0.93646 1.21578 1.00702 0.95945 0.97560 1.21580 1.01380 0.95312 0.97042 1.22170 0.97557 0.98900 0.89074 0.95988 0.94311 0.93202 0.88392 0.95082 0.92680 0.76949 0.91648 0.91964 0.91152 0.92390 0.92468 0.90947 0.94950 0.89114 0.90743 0.91732 0.92102 0.92657 0.90952 0.91974 0.90403 0.94751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.69 -14.52 3.91 -54.93 -0.21 -14.73 16 14 C 0.52 10.19 3.99 -10.99 -0.04 10.15 16 15 O -0.55 -12.86 13.23 5.56 0.07 -12.79 16 16 C 0.09 1.31 0.64 -132.75 -0.08 1.22 16 17 C -0.13 -1.80 8.23 37.16 0.31 -1.49 16 18 C -0.16 -2.29 7.32 37.16 0.27 -2.02 16 19 N -0.52 -6.98 3.76 -220.34 -0.83 -7.81 16 20 C 0.04 0.58 4.61 -3.83 -0.02 0.57 16 21 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 22 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 23 C -0.12 -1.11 6.09 -26.64 -0.16 -1.28 16 24 C 0.05 0.55 4.64 -3.83 -0.02 0.53 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.83 4.61 -51.93 -0.24 0.59 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.40 7.76 7.84 -40.82 -0.32 7.44 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.67 6.28 -51.93 -0.33 0.34 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.87 6.63 -51.93 -0.34 0.52 16 36 H 0.06 0.66 6.54 -51.93 -0.34 0.33 16 37 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 38 H 0.03 0.45 6.71 -51.93 -0.35 0.10 16 39 H 0.09 1.54 5.05 -51.93 -0.26 1.28 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.78 6.01 -51.93 -0.31 0.47 16 47 H 0.03 0.37 6.63 -51.93 -0.34 0.03 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -28.58 343.91 -8.76 -37.34 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.12 Total: 8.48 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.45 Total: -7.20 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.42 Total: -46.76 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.58 -8.76 -37.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.057 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds