Wall clock time and date at job start Tue Mar 31 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09007 * 109.47095 * 54.26306 * 3 2 1 5 5 C 1.50701 * 109.47057 * 174.25808 * 3 2 1 6 6 H 1.07997 * 119.99563 * 114.30815 * 5 3 2 7 7 C 1.37872 * 120.00202 * 294.31032 * 5 3 2 8 8 N 1.31510 * 120.00122 * 153.95351 * 7 5 3 9 9 Si 1.86801 * 120.00006 * 333.94734 * 7 5 3 10 10 H 1.48502 * 109.46941 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47234 * 300.00263 * 9 7 5 12 12 H 1.48497 * 109.47009 * 60.00231 * 9 7 5 13 13 N 1.46499 * 109.47209 * 294.26072 * 3 2 1 14 14 C 1.34777 * 119.99671 * 85.00280 * 13 3 2 15 15 O 1.21278 * 120.00132 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99805 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47241 * 84.99710 * 16 14 13 18 18 C 1.52993 * 109.47191 * 204.99761 * 16 14 13 19 19 N 1.46903 * 109.47003 * 325.00062 * 16 14 13 20 20 C 1.46851 * 110.99632 * 304.20775 * 19 16 14 21 21 C 1.53036 * 109.52116 * 174.16374 * 20 19 16 22 22 C 1.53120 * 109.28042 * 59.17609 * 21 20 19 23 23 C 1.53118 * 109.16217 * 302.35037 * 22 21 20 24 24 C 1.46846 * 111.00006 * 179.97438 * 19 16 14 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97003 * 120.00191 * 354.96324 * 8 7 5 31 31 H 0.96993 * 120.00174 * 264.99833 * 13 3 2 32 32 H 1.09001 * 109.46709 * 59.99804 * 17 16 14 33 33 H 1.08994 * 109.47570 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.47019 * 300.00469 * 17 16 14 35 35 H 1.09001 * 109.47509 * 59.99844 * 18 16 14 36 36 H 1.09003 * 109.47342 * 179.97438 * 18 16 14 37 37 H 1.09001 * 109.47501 * 299.99742 * 18 16 14 38 38 H 1.09000 * 109.46021 * 294.17537 * 20 19 16 39 39 H 1.08990 * 109.46483 * 54.14649 * 20 19 16 40 40 H 1.09006 * 109.50362 * 299.23864 * 21 20 19 41 41 H 1.08998 * 109.50334 * 179.11692 * 21 20 19 42 42 H 1.08998 * 109.52607 * 182.43972 * 22 21 20 43 43 H 1.09007 * 109.51901 * 62.25027 * 22 21 20 44 44 H 1.08997 * 109.50053 * 297.70711 * 23 22 21 45 45 H 1.09004 * 109.50383 * 177.59705 * 23 22 21 46 46 H 1.09001 * 109.46511 * 305.85728 * 24 19 16 47 47 H 1.09007 * 109.46027 * 65.82142 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5951 1.9852 0.8342 5 6 3.5402 1.4451 0.1422 6 1 4.1587 1.8023 -0.6679 7 6 4.1232 0.9912 1.3062 8 7 5.3464 0.5088 1.2844 9 14 3.1755 1.0616 2.9145 10 1 4.0183 0.5182 4.0098 11 1 2.8189 2.4710 3.2176 12 1 1.9363 0.2523 2.7946 13 7 1.6676 2.0921 -1.2592 14 6 0.4517 2.6585 -1.3915 15 8 -0.3342 2.6299 -0.4683 16 6 0.0689 3.3272 -2.6867 17 6 -0.4750 2.2797 -3.6602 18 6 -1.0072 4.3810 -2.4179 19 7 1.2512 3.9729 -3.2725 20 6 1.8602 4.9148 -2.3246 21 6 3.1657 5.4576 -2.9105 22 6 2.8703 6.1601 -4.2386 23 6 2.1925 5.1708 -5.1906 24 6 0.9155 4.6359 -4.5390 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8116 0.4043 0.4396 31 1 2.2961 2.1147 -1.9976 32 1 -1.3522 1.8005 -3.2255 33 1 -0.7515 2.7632 -4.5971 34 1 0.2917 1.5288 -3.8517 35 1 -0.6198 5.1273 -1.7243 36 1 -1.2838 4.8650 -3.3546 37 1 -1.8845 3.9019 -1.9833 38 1 1.1732 5.7410 -2.1416 39 1 2.0691 4.4016 -1.3861 40 1 3.8584 4.6334 -3.0810 41 1 3.6095 6.1685 -2.2136 42 1 3.8029 6.5105 -4.6807 43 1 2.2083 7.0081 -4.0627 44 1 2.8699 4.3423 -5.3970 45 1 1.9411 5.6769 -6.1228 46 1 0.4382 3.9201 -5.2083 47 1 0.2326 5.4634 -4.3459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:01 Heat of formation + Delta-G solvation = -48.996697 kcal Electronic energy + Delta-G solvation = -24688.108148 eV Core-core repulsion = 21484.149377 eV Total energy + Delta-G solvation = -3203.958771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40041 -38.23269 -35.48047 -34.61892 -32.37142 -31.39572 -30.78090 -30.22358 -27.48840 -26.98667 -24.59983 -23.26800 -22.38150 -21.89425 -19.95997 -19.51975 -18.86835 -17.69320 -16.83130 -15.64151 -15.25028 -14.75187 -14.67194 -14.36934 -14.05392 -13.88158 -13.57393 -13.37753 -13.18484 -12.72225 -12.60852 -12.33651 -12.30077 -12.14201 -11.86909 -11.77654 -11.63133 -11.57809 -11.27160 -10.91540 -10.75919 -10.71181 -10.63471 -10.39051 -10.35004 -10.24603 -9.82038 -9.73605 -9.13986 -8.97270 -8.26282 -8.20182 -7.93502 -6.56275 -4.14468 3.26431 3.43319 3.47899 3.63609 3.86486 4.05399 4.47473 4.78131 4.80894 4.91792 4.99218 5.12154 5.16716 5.29000 5.37211 5.40633 5.46282 5.59224 5.63016 5.67572 5.77537 5.83585 5.84649 5.91078 5.98157 6.04476 6.11098 6.14278 6.15215 6.15975 6.27221 6.31840 6.34322 6.44761 6.75509 6.83927 7.03519 7.04947 7.11484 7.14693 7.43419 7.55564 7.77320 8.30213 8.63724 8.78211 9.11942 9.50020 10.81280 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.006245 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.837776 B = 4482.478987 C = 5364.845563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.249 3.751 4 H 0.037 0.963 5 C -0.624 4.624 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.888 5.888 9 Si 1.028 2.972 10 H -0.284 1.284 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.688 5.688 14 C 0.516 3.484 15 O -0.555 6.555 16 C 0.087 3.913 17 C -0.135 4.135 18 C -0.163 4.163 19 N -0.522 5.522 20 C 0.044 3.956 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.115 4.115 24 C 0.051 3.949 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.271 0.729 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 8.227 -12.663 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.145 3.855 4 H 0.055 0.945 5 C -0.662 4.662 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.520 5.520 9 Si 0.856 3.144 10 H -0.210 1.210 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.336 5.336 14 C 0.299 3.701 15 O -0.434 6.434 16 C -0.005 4.005 17 C -0.192 4.192 18 C -0.222 4.222 19 N -0.248 5.248 20 C -0.084 4.084 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.076 4.076 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.590 7.516 -10.448 15.474 hybrid contribution -0.375 0.962 -1.841 2.111 sum -8.965 8.477 -12.290 17.415 Atomic orbital electron populations 1.21890 0.97520 0.98706 1.01929 1.22220 0.93591 0.99880 1.01253 1.18999 0.95724 0.88428 0.82336 0.94540 1.21980 0.89769 1.49694 1.04712 0.91863 1.25555 0.96616 0.91781 1.01980 1.70865 1.13943 1.36614 1.30541 0.84242 0.76059 0.77529 0.76607 1.20954 1.20820 1.19997 1.46290 1.14492 1.54797 1.17971 1.20039 0.82818 0.79263 0.87942 1.90655 1.51050 1.60928 1.40783 1.21327 0.90212 0.95110 0.93888 1.21822 1.01361 0.98070 0.97983 1.22215 0.99724 0.98983 1.01318 1.62129 1.26303 1.32023 1.04327 1.22283 0.95328 0.94384 0.96381 1.21549 0.97243 1.00189 0.96221 1.21583 1.00225 0.97838 0.96144 1.21575 0.97074 0.99104 0.97567 1.22166 0.96809 0.97213 0.91444 0.95245 0.93141 0.93227 0.93213 0.92049 0.91900 0.76435 0.91659 0.91778 0.91272 0.92286 0.92341 0.90945 0.94882 0.89247 0.90738 0.91613 0.92048 0.92642 0.90985 0.91929 0.90429 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.53 37.16 0.32 -2.64 16 2 C -0.13 -2.97 5.37 -26.73 -0.14 -3.11 16 3 C 0.25 5.96 1.84 -69.08 -0.13 5.83 16 4 H 0.04 0.96 6.12 -51.92 -0.32 0.64 16 5 C -0.62 -16.78 8.92 -34.44 -0.31 -17.09 16 6 H 0.06 1.79 7.96 -52.49 -0.42 1.37 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -26.20 13.70 55.43 0.76 -25.45 16 9 Si 1.03 25.21 26.56 -169.99 -4.51 20.70 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.42 6.34 56.52 0.36 -6.06 16 13 N -0.69 -14.03 3.92 -54.93 -0.22 -14.25 16 14 C 0.52 9.79 3.95 -10.98 -0.04 9.75 16 15 O -0.56 -12.22 13.24 5.56 0.07 -12.15 16 16 C 0.09 1.27 0.64 -132.75 -0.08 1.19 16 17 C -0.13 -1.69 8.23 37.16 0.31 -1.39 16 18 C -0.16 -2.22 7.32 37.15 0.27 -1.94 16 19 N -0.52 -6.99 3.76 -220.36 -0.83 -7.82 16 20 C 0.04 0.63 4.61 -3.83 -0.02 0.62 16 21 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 22 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 23 C -0.12 -1.14 6.09 -26.66 -0.16 -1.30 16 24 C 0.05 0.55 4.65 -3.84 -0.02 0.54 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 27 H 0.05 1.01 5.63 -51.93 -0.29 0.71 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.47 5.77 -51.93 -0.30 1.17 16 30 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 31 H 0.40 7.84 7.83 -40.82 -0.32 7.52 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.65 6.28 -51.93 -0.33 0.33 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 36 H 0.06 0.66 6.54 -51.93 -0.34 0.32 16 37 H 0.07 1.03 7.87 -51.93 -0.41 0.63 16 38 H 0.03 0.46 6.71 -51.93 -0.35 0.12 16 39 H 0.09 1.59 6.08 -51.93 -0.32 1.27 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.76 6.00 -51.93 -0.31 0.45 16 47 H 0.03 0.37 6.63 -51.92 -0.34 0.03 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -29.13 343.20 -8.19 -37.33 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.22 Total: 7.75 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.42 Total: -11.29 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.28 Total: -47.51 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.51 Total: 20.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.13 -8.19 -37.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.671 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds