Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09007 * 109.47095 * 54.26306 * 3 2 1 5 5 C 1.50701 * 109.47057 * 174.25808 * 3 2 1 6 6 H 1.07997 * 119.99563 * 114.30815 * 5 3 2 7 7 C 1.37872 * 120.00202 * 294.31032 * 5 3 2 8 8 N 1.31510 * 120.00122 * 153.95351 * 7 5 3 9 9 Si 1.86801 * 120.00006 * 333.94734 * 7 5 3 10 10 H 1.48502 * 109.46941 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47234 * 300.00263 * 9 7 5 12 12 H 1.48497 * 109.47009 * 60.00231 * 9 7 5 13 13 N 1.46499 * 109.47209 * 294.26072 * 3 2 1 14 14 C 1.34777 * 119.99671 * 85.00280 * 13 3 2 15 15 O 1.21278 * 120.00132 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99805 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47241 * 84.99710 * 16 14 13 18 18 C 1.52993 * 109.47191 * 204.99761 * 16 14 13 19 19 N 1.46903 * 109.47003 * 325.00062 * 16 14 13 20 20 C 1.46851 * 110.99632 * 304.20775 * 19 16 14 21 21 C 1.53036 * 109.52116 * 174.16374 * 20 19 16 22 22 C 1.53120 * 109.28042 * 59.17609 * 21 20 19 23 23 C 1.53118 * 109.16217 * 302.35037 * 22 21 20 24 24 C 1.46846 * 111.00006 * 179.97438 * 19 16 14 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97003 * 120.00191 * 354.96324 * 8 7 5 31 31 H 0.96993 * 120.00174 * 264.99833 * 13 3 2 32 32 H 1.09001 * 109.46709 * 59.99804 * 17 16 14 33 33 H 1.08994 * 109.47570 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.47019 * 300.00469 * 17 16 14 35 35 H 1.09001 * 109.47509 * 59.99844 * 18 16 14 36 36 H 1.09003 * 109.47342 * 179.97438 * 18 16 14 37 37 H 1.09001 * 109.47501 * 299.99742 * 18 16 14 38 38 H 1.09000 * 109.46021 * 294.17537 * 20 19 16 39 39 H 1.08990 * 109.46483 * 54.14649 * 20 19 16 40 40 H 1.09006 * 109.50362 * 299.23864 * 21 20 19 41 41 H 1.08998 * 109.50334 * 179.11692 * 21 20 19 42 42 H 1.08998 * 109.52607 * 182.43972 * 22 21 20 43 43 H 1.09007 * 109.51901 * 62.25027 * 22 21 20 44 44 H 1.08997 * 109.50053 * 297.70711 * 23 22 21 45 45 H 1.09004 * 109.50383 * 177.59705 * 23 22 21 46 46 H 1.09001 * 109.46511 * 305.85728 * 24 19 16 47 47 H 1.09007 * 109.46027 * 65.82142 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5951 1.9852 0.8342 5 6 3.5402 1.4451 0.1422 6 1 4.1587 1.8023 -0.6679 7 6 4.1232 0.9912 1.3062 8 7 5.3464 0.5088 1.2844 9 14 3.1755 1.0616 2.9145 10 1 4.0183 0.5182 4.0098 11 1 2.8189 2.4710 3.2176 12 1 1.9363 0.2523 2.7946 13 7 1.6676 2.0921 -1.2592 14 6 0.4517 2.6585 -1.3915 15 8 -0.3342 2.6299 -0.4683 16 6 0.0689 3.3272 -2.6867 17 6 -0.4750 2.2797 -3.6602 18 6 -1.0072 4.3810 -2.4179 19 7 1.2512 3.9729 -3.2725 20 6 1.8602 4.9148 -2.3246 21 6 3.1657 5.4576 -2.9105 22 6 2.8703 6.1601 -4.2386 23 6 2.1925 5.1708 -5.1906 24 6 0.9155 4.6359 -4.5390 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8116 0.4043 0.4396 31 1 2.2961 2.1147 -1.9976 32 1 -1.3522 1.8005 -3.2255 33 1 -0.7515 2.7632 -4.5971 34 1 0.2917 1.5288 -3.8517 35 1 -0.6198 5.1273 -1.7243 36 1 -1.2838 4.8650 -3.3546 37 1 -1.8845 3.9019 -1.9833 38 1 1.1732 5.7410 -2.1416 39 1 2.0691 4.4016 -1.3861 40 1 3.8584 4.6334 -3.0810 41 1 3.6095 6.1685 -2.2136 42 1 3.8029 6.5105 -4.6807 43 1 2.2083 7.0081 -4.0627 44 1 2.8699 4.3423 -5.3970 45 1 1.9411 5.6769 -6.1228 46 1 0.4382 3.9201 -5.2083 47 1 0.2326 5.4634 -4.3459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907389721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = -67.775351 kcal Electronic energy + Delta-G solvation = -24688.922451 eV Core-core repulsion = 21484.149377 eV Total energy + Delta-G solvation = -3204.773075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70771 -39.56322 -37.16088 -35.85831 -34.44046 -33.03181 -31.85350 -31.24567 -29.21627 -28.23150 -25.74290 -24.55846 -24.01975 -23.20820 -21.51314 -20.98955 -20.24493 -19.42699 -18.28992 -17.19253 -16.71707 -16.11850 -15.82163 -15.51373 -15.42682 -15.13786 -15.02791 -14.68348 -14.46789 -14.39097 -14.17406 -14.00122 -13.63356 -13.38787 -13.29390 -12.92571 -12.88606 -12.68284 -12.64964 -12.47759 -12.39052 -12.22857 -11.91934 -11.77460 -11.59033 -11.57834 -11.36203 -11.21019 -11.15622 -10.51747 -10.40009 -9.68706 -9.30928 -8.79704 -6.38173 1.44504 1.46465 1.67858 1.78044 2.41435 2.53400 2.79227 2.93974 3.66813 3.85680 3.92805 4.03982 4.08067 4.12818 4.31168 4.34054 4.39327 4.40601 4.52059 4.54752 4.62739 4.69119 4.70203 4.76681 4.81724 4.84836 4.89236 4.98408 5.06068 5.07971 5.10648 5.13696 5.22978 5.23620 5.24759 5.31216 5.36411 5.50773 5.55401 5.73095 5.75136 5.98662 6.04980 6.14563 6.57481 6.96098 7.29557 7.52180 8.56368 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.006245 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.837776 B = 4482.478987 C = 5364.845563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.255 3.745 4 H 0.015 0.985 5 C -0.620 4.620 6 H 0.039 0.961 7 C 0.008 3.992 8 N -0.915 5.915 9 Si 1.062 2.938 10 H -0.280 1.280 11 H -0.277 1.277 12 H -0.257 1.257 13 N -0.689 5.689 14 C 0.514 3.486 15 O -0.586 6.586 16 C 0.094 3.906 17 C -0.131 4.131 18 C -0.157 4.157 19 N -0.527 5.527 20 C 0.049 3.951 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.112 4.112 24 C 0.049 3.951 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.261 0.739 31 H 0.404 0.596 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 8.985 -14.657 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.150 3.850 4 H 0.033 0.967 5 C -0.658 4.658 6 H 0.057 0.943 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.884 3.116 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.182 1.182 13 N -0.336 5.336 14 C 0.300 3.700 15 O -0.467 6.467 16 C 0.001 3.999 17 C -0.188 4.188 18 C -0.216 4.216 19 N -0.253 5.253 20 C -0.079 4.079 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.078 4.078 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.239 0.761 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.498 8.285 -12.480 18.292 hybrid contribution 0.251 0.783 -1.277 1.519 sum -10.248 9.067 -13.757 19.403 Atomic orbital electron populations 1.21755 0.95520 1.00256 1.01350 1.22107 0.95288 0.98479 1.00730 1.18691 0.93480 0.89424 0.83443 0.96689 1.22107 0.91421 1.48470 1.03796 0.94255 1.26589 0.96740 0.91363 1.04777 1.70954 1.15013 1.38939 1.29984 0.83788 0.75835 0.78111 0.73826 1.20507 1.20250 1.18150 1.46124 1.15473 1.55255 1.16796 1.20843 0.81539 0.78250 0.89342 1.90632 1.51722 1.61882 1.42461 1.21276 0.90904 0.95791 0.91927 1.21833 1.00893 0.97422 0.98672 1.22183 0.98712 0.98233 1.02503 1.62137 1.25885 1.32315 1.04993 1.22139 0.96394 0.94198 0.95205 1.21525 0.95927 0.99737 0.97891 1.21556 1.01153 0.97948 0.94580 1.21581 0.96316 0.98778 0.98306 1.22328 0.97682 0.97814 0.89954 0.92560 0.94422 0.93081 0.92981 0.93306 0.92960 0.76068 0.91839 0.88510 0.91917 0.93839 0.89147 0.91781 0.94445 0.93397 0.92577 0.91813 0.90942 0.91724 0.91885 0.89277 0.88697 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.53 71.98 0.61 -4.65 16 2 C -0.13 -5.75 5.37 30.60 0.16 -5.58 16 3 C 0.25 12.40 1.84 44.25 0.08 12.49 16 4 H 0.02 0.82 6.12 -2.38 -0.01 0.80 16 5 C -0.62 -34.38 8.92 25.60 0.23 -34.15 16 6 H 0.04 2.32 7.96 -2.91 -0.02 2.30 16 7 C 0.01 0.47 5.15 84.65 0.44 0.91 16 8 N -0.92 -55.39 13.70 21.44 0.29 -55.10 16 9 Si 1.06 51.45 26.56 68.60 1.82 53.27 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.66 6.34 99.48 0.63 -11.03 16 13 N -0.69 -28.54 3.92 -446.08 -1.75 -30.29 16 14 C 0.51 19.46 3.95 87.66 0.35 19.81 16 15 O -0.59 -25.85 13.24 -3.02 -0.04 -25.89 16 16 C 0.09 2.58 0.64 2.78 0.00 2.58 16 17 C -0.13 -2.91 8.23 71.98 0.59 -2.32 16 18 C -0.16 -3.93 7.32 71.98 0.53 -3.40 16 19 N -0.53 -13.29 3.76 -851.08 -3.20 -16.49 16 20 C 0.05 1.40 4.61 86.32 0.40 1.80 16 21 C -0.11 -2.84 6.09 30.65 0.19 -2.65 16 22 C -0.11 -2.10 6.00 30.67 0.18 -1.92 16 23 C -0.11 -1.84 6.09 30.64 0.19 -1.66 16 24 C 0.05 0.88 4.65 86.32 0.40 1.28 16 25 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.04 1.59 7.89 -2.39 -0.02 1.57 16 27 H 0.05 2.01 5.63 -2.39 -0.01 2.00 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 2.31 5.77 -2.39 -0.01 2.30 16 30 H 0.26 15.82 8.73 -92.71 -0.81 15.01 16 31 H 0.40 16.17 7.83 -92.71 -0.73 15.44 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.53 6.28 -2.39 -0.02 1.52 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.04 1.21 6.63 -2.39 -0.02 1.20 16 36 H 0.09 1.67 6.54 -2.39 -0.02 1.66 16 37 H 0.06 1.72 7.87 -2.39 -0.02 1.70 16 38 H 0.04 1.03 6.71 -2.39 -0.02 1.01 16 39 H 0.05 1.77 6.08 -2.39 -0.01 1.75 16 40 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.09 1.42 6.00 -2.39 -0.01 1.40 16 47 H 0.04 0.75 6.63 -2.38 -0.02 0.73 16 Total: -1.00 -64.49 343.20 1.58 -62.91 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.11 Total: 29.06 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.35 Total: -17.48 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.65 Total: -101.88 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.04 Total: -25.89 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 1.82 Total: 53.27 kcal Total: -64.49 1.58 -62.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.864 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds