Wall clock time and date at job start Tue Mar 31 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47025 * 2 1 4 4 N 1.46498 * 109.46757 * 119.99714 * 2 1 3 5 5 C 1.46500 * 120.00241 * 299.99899 * 4 2 1 6 6 C 1.50706 * 109.47299 * 270.00338 * 5 4 2 7 7 H 1.07998 * 119.99501 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00481 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99886 * 359.72901 * 8 6 5 11 11 H 1.48502 * 109.46964 * 270.27509 * 10 8 6 12 12 H 1.48505 * 109.47036 * 30.26897 * 10 8 6 13 13 H 1.48490 * 109.47395 * 150.27411 * 10 8 6 14 14 C 1.34779 * 119.99942 * 120.00252 * 4 2 1 15 15 O 1.21281 * 119.99906 * 179.97438 * 14 4 2 16 16 C 1.50703 * 119.99964 * 359.97438 * 14 4 2 17 17 H 1.08997 * 109.90816 * 300.70217 * 16 14 4 18 18 C 1.53993 * 109.91438 * 61.80736 * 16 14 4 19 19 C 1.54594 * 105.14182 * 120.57661 * 18 16 14 20 20 C 1.54938 * 102.91758 * 21.95672 * 19 18 16 21 21 N 1.47899 * 109.91317 * 179.59779 * 16 14 4 22 22 C 1.46899 * 110.99729 * 94.80835 * 21 16 14 23 23 C 1.53001 * 109.47262 * 174.99380 * 22 21 16 24 24 C 1.53003 * 109.47202 * 294.99280 * 22 21 16 25 25 H 1.09003 * 109.47627 * 300.00351 * 1 2 3 26 26 H 1.09004 * 109.47171 * 60.00136 * 1 2 3 27 27 H 1.09007 * 109.47689 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47079 * 239.99240 * 2 1 3 29 29 H 1.09007 * 109.47025 * 179.97438 * 3 2 1 30 30 H 1.09009 * 109.46966 * 299.99463 * 3 2 1 31 31 H 1.08997 * 109.47812 * 59.99689 * 3 2 1 32 32 H 1.09004 * 109.47418 * 150.00490 * 5 4 2 33 33 H 1.09001 * 109.46878 * 29.99980 * 5 4 2 34 34 H 0.96999 * 120.00235 * 179.72806 * 9 8 6 35 35 H 1.09007 * 110.30625 * 239.49194 * 18 16 14 36 36 H 1.09000 * 110.30964 * 1.65875 * 18 16 14 37 37 H 1.08998 * 110.72535 * 140.30949 * 19 18 16 38 38 H 1.08994 * 110.72322 * 263.59746 * 19 18 16 39 39 H 1.09000 * 110.66983 * 81.02099 * 20 19 18 40 40 H 1.09002 * 110.66530 * 203.98491 * 20 19 18 41 41 H 1.09004 * 109.47395 * 54.99565 * 22 21 16 42 42 H 1.09003 * 109.47510 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47444 * 300.00121 * 23 22 21 44 44 H 1.09004 * 109.46765 * 59.99799 * 23 22 21 45 45 H 1.09004 * 109.46640 * 59.99975 * 24 22 21 46 46 H 1.08999 * 109.47130 * 180.02562 * 24 22 21 47 47 H 1.09000 * 109.46721 * 300.00319 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7030 0.8020 2.9830 7 1 3.5430 1.0358 2.3458 8 6 2.5810 1.4110 4.2139 9 7 3.4877 2.2763 4.6123 10 14 1.1241 1.0123 5.3130 11 1 0.0075 1.9439 5.0120 12 1 0.6842 -0.3842 5.0645 13 1 1.5223 1.1602 6.7358 14 6 2.7931 -1.7864 1.0726 15 8 3.1976 -2.3578 2.0629 16 6 3.1568 -2.3016 -0.2961 17 1 2.2524 -2.5493 -0.8518 18 6 3.9664 -1.2370 -1.0592 19 6 5.3185 -1.9131 -1.3827 20 6 4.9786 -3.4227 -1.3037 21 7 4.0157 -3.4992 -0.1717 22 6 3.2159 -4.7297 -0.2374 23 6 4.1468 -5.9439 -0.2311 24 6 2.2824 -4.7965 0.9730 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3635 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6237 -1.0225 3.2293 33 1 0.6903 0.2975 2.4843 34 1 3.3998 2.7077 5.4766 35 1 3.4527 -0.9589 -1.9796 36 1 4.1228 -0.3592 -0.4322 37 1 5.6538 -1.6452 -2.3847 38 1 6.0702 -1.6475 -0.6394 39 1 4.5096 -3.7604 -2.2278 40 1 5.8735 -4.0079 -1.0917 41 1 2.6244 -4.7301 -1.1530 42 1 3.5534 -6.8570 -0.2794 43 1 4.8119 -5.8964 -1.0933 44 1 4.7383 -5.9434 0.6845 45 1 1.6193 -3.9314 0.9685 46 1 1.6893 -5.7097 0.9245 47 1 2.8740 -4.7960 1.8885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931326056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:07 Heat of formation + Delta-G solvation = -26.677553 kcal Electronic energy + Delta-G solvation = -24653.639058 eV Core-core repulsion = 21450.648117 eV Total energy + Delta-G solvation = -3202.990941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19537 -37.95130 -35.86374 -34.37266 -32.69051 -30.90503 -29.97130 -29.17010 -27.65885 -26.83915 -26.52027 -23.23270 -22.00310 -21.44688 -20.61748 -19.96253 -18.08640 -16.91585 -16.60333 -16.24659 -15.49284 -14.70400 -14.49702 -14.20635 -13.88710 -13.62274 -13.45338 -13.14674 -13.00533 -12.61993 -12.59471 -12.42201 -12.19991 -11.90918 -11.75449 -11.67761 -11.45608 -11.30618 -11.16575 -11.09044 -10.88255 -10.85916 -10.77359 -10.68543 -10.58265 -10.39491 -10.21787 -10.02061 -9.38191 -8.84183 -8.51976 -8.13642 -7.57118 -6.01804 -3.98263 3.29949 3.38487 3.43547 3.47359 3.66465 4.21420 4.45482 4.68638 4.72839 4.95621 5.10903 5.13231 5.18376 5.26408 5.30435 5.34184 5.40397 5.50114 5.58078 5.65141 5.66704 5.74698 5.85245 5.89456 5.92296 5.94851 5.98815 6.06499 6.10940 6.15428 6.25742 6.26256 6.32605 6.35673 6.56771 6.64285 6.78204 6.96302 7.03624 7.10785 7.23502 7.51562 7.70419 8.42417 8.56309 9.02895 9.19920 9.59862 11.11563 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.005897 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.120655 B = 4747.258540 C = 5107.821392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.218 3.782 6 C -0.516 4.516 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.870 3.130 11 H -0.277 1.277 12 H -0.265 1.265 13 H -0.285 1.285 14 C 0.517 3.483 15 O -0.513 6.513 16 C 0.051 3.949 17 H 0.066 0.934 18 C -0.126 4.126 19 C -0.123 4.123 20 C 0.038 3.962 21 N -0.487 5.487 22 C 0.074 3.926 23 C -0.142 4.142 24 C -0.139 4.139 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -9.932 -15.720 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 C -0.214 4.214 4 N -0.326 5.326 5 C 0.097 3.903 6 C -0.555 4.555 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.697 3.303 11 H -0.203 1.203 12 H -0.189 1.189 13 H -0.211 1.211 14 C 0.303 3.697 15 O -0.388 6.388 16 C -0.061 4.061 17 H 0.084 0.916 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.090 4.090 21 N -0.212 5.212 22 C -0.035 4.035 23 C -0.200 4.200 24 C -0.196 4.196 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.257 -10.157 -14.496 17.843 hybrid contribution -1.237 0.045 -0.126 1.245 sum -3.494 -10.112 -14.622 18.118 Atomic orbital electron populations 1.22182 0.95978 1.01588 1.02377 1.21107 0.93748 0.94451 0.88207 1.22156 1.01720 0.95356 1.02211 1.47983 1.50167 1.26936 1.07543 1.19567 0.95785 0.95271 0.79654 1.21346 1.09201 1.22148 1.02817 0.90592 1.24840 0.96034 0.94850 0.97345 1.69892 1.34678 1.28376 1.20893 0.86936 0.83286 0.79442 0.80619 1.20274 1.18938 1.21103 1.20003 0.78880 0.80672 0.90190 1.90652 1.51592 1.57511 1.39001 1.22333 0.96191 0.92242 0.95336 0.91622 1.22541 0.95567 0.98565 0.99713 1.22490 0.97634 0.94289 1.01657 1.23258 0.96725 0.97068 0.91942 1.64480 1.14811 1.00131 1.41777 1.21776 0.94031 0.90175 0.97472 1.21839 0.99392 0.96267 1.02500 1.21844 0.98616 1.00312 0.98857 0.91611 0.92146 0.93059 0.90382 0.92375 0.93383 0.90077 0.94466 0.95844 0.92745 0.90938 0.89481 0.91000 0.90331 0.94119 0.89897 0.94833 0.92473 0.92927 0.91466 0.93135 0.93265 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.17 37.16 0.34 -1.94 16 2 C 0.13 2.06 2.37 -67.94 -0.16 1.90 16 3 C -0.16 -2.60 8.40 37.16 0.31 -2.28 16 4 N -0.59 -12.11 2.36 -167.47 -0.40 -12.50 16 5 C 0.22 5.30 3.66 -5.19 -0.02 5.28 16 6 C -0.52 -14.57 8.38 -34.44 -0.29 -14.86 16 7 H 0.08 2.35 7.87 -52.49 -0.41 1.93 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 10 Si 0.87 21.73 27.46 -169.99 -4.67 17.06 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -6.51 6.55 56.52 0.37 -6.14 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.52 10.69 5.49 -10.98 -0.06 10.63 16 15 O -0.51 -12.79 14.13 5.56 0.08 -12.72 16 16 C 0.05 0.81 1.49 -67.79 -0.10 0.71 16 17 H 0.07 0.94 7.27 -51.93 -0.38 0.56 16 18 C -0.13 -1.73 4.83 -25.38 -0.12 -1.85 16 19 C -0.12 -1.50 7.07 -24.87 -0.18 -1.68 16 20 C 0.04 0.46 5.33 -1.74 -0.01 0.45 16 21 N -0.49 -7.47 4.33 -215.79 -0.94 -8.41 16 22 C 0.07 1.00 2.39 -67.71 -0.16 0.83 16 23 C -0.14 -1.61 9.00 37.16 0.33 -1.27 16 24 C -0.14 -2.10 7.94 37.16 0.30 -1.80 16 25 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.06 4.32 -51.93 -0.22 0.84 16 29 H 0.06 1.03 7.09 -51.92 -0.37 0.67 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 32 H 0.04 1.00 6.49 -51.93 -0.34 0.66 16 33 H 0.02 0.54 5.84 -51.93 -0.30 0.24 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 0.80 7.54 -51.92 -0.39 0.41 16 36 H 0.09 1.42 6.08 -51.93 -0.32 1.10 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.43 8.02 -51.93 -0.42 0.01 16 40 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 41 H 0.03 0.42 7.96 -51.93 -0.41 0.00 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.52 6.90 -51.93 -0.36 0.16 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.85 6.23 -51.93 -0.32 0.52 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 1.37 7.56 -51.93 -0.39 0.97 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -32.99 347.90 -8.11 -41.09 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.29 Total: 1.10 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 0.09 Total: -3.91 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.56 Total: -47.87 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.99 -8.11 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.417 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds