Wall clock time and date at job start Tue Mar 31 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47066 * 2 1 4 4 N 1.46496 * 109.47450 * 120.00310 * 2 1 3 5 5 C 1.46498 * 119.99944 * 299.99965 * 4 2 1 6 6 C 1.50693 * 109.47494 * 269.99965 * 5 4 2 7 7 H 1.07997 * 120.00048 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00327 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00058 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99958 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47089 * 89.99946 * 10 8 6 12 12 H 1.48498 * 109.47398 * 209.99933 * 10 8 6 13 13 H 1.48496 * 109.47109 * 330.00371 * 10 8 6 14 14 C 1.34769 * 120.00064 * 119.99934 * 4 2 1 15 15 O 1.21286 * 120.00166 * 179.97438 * 14 4 2 16 16 C 1.50703 * 120.00474 * 0.02562 * 14 4 2 17 17 H 1.08998 * 110.45789 * 57.58315 * 16 14 4 18 18 C 1.54380 * 110.41158 * 295.17724 * 16 14 4 19 19 C 1.54254 * 105.05749 * 217.36469 * 18 16 14 20 20 C 1.54376 * 105.06313 * 359.97438 * 19 18 16 21 21 N 1.48552 * 104.59698 * 23.85125 * 20 19 18 22 22 C 1.46902 * 111.00506 * 200.96040 * 21 20 19 23 23 C 1.52997 * 109.47094 * 295.42198 * 22 21 20 24 24 C 1.52992 * 109.47181 * 175.41738 * 22 21 20 25 25 H 1.08995 * 109.47013 * 299.99266 * 1 2 3 26 26 H 1.08996 * 109.47383 * 59.99824 * 1 2 3 27 27 H 1.09008 * 109.46827 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47018 * 240.00462 * 2 1 3 29 29 H 1.08996 * 109.47533 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47163 * 300.00311 * 3 2 1 31 31 H 1.09003 * 109.46825 * 60.00344 * 3 2 1 32 32 H 1.09000 * 109.47261 * 30.00382 * 5 4 2 33 33 H 1.09002 * 109.47081 * 149.99881 * 5 4 2 34 34 H 0.97005 * 120.00273 * 180.02562 * 9 8 6 35 35 H 1.09002 * 110.31821 * 336.25666 * 18 16 14 36 36 H 1.08992 * 110.32460 * 98.46442 * 18 16 14 37 37 H 1.09002 * 110.32464 * 118.89568 * 19 18 16 38 38 H 1.09002 * 110.32192 * 240.99705 * 19 18 16 39 39 H 1.09008 * 110.41144 * 265.07236 * 20 19 18 40 40 H 1.09003 * 110.41254 * 142.63424 * 20 19 18 41 41 H 1.09002 * 109.46719 * 55.41972 * 22 21 20 42 42 H 1.09002 * 109.47153 * 299.99508 * 23 22 21 43 43 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47261 * 59.99681 * 23 22 21 45 45 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 46 46 H 1.08996 * 109.47747 * 300.00057 * 24 22 21 47 47 H 1.09002 * 109.47103 * 60.00469 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8017 2.9830 7 1 3.5427 1.0363 2.3454 8 6 2.5812 1.4106 4.2140 9 7 3.4873 2.2766 4.6119 10 14 1.1279 1.0066 5.3159 11 1 1.4762 -0.1390 6.1943 12 1 0.7968 2.1884 6.1518 13 1 -0.0445 0.6490 4.4777 14 6 2.7932 -1.7864 1.0723 15 8 3.1980 -2.3579 2.0626 16 6 3.1578 -2.3009 -0.2964 17 1 3.6669 -1.5272 -0.8711 18 6 1.8962 -2.7842 -1.0435 19 6 2.3492 -4.0319 -1.8294 20 6 3.8464 -4.1971 -1.4915 21 7 4.0135 -3.5099 -0.1851 22 6 5.4177 -3.1423 0.0407 23 6 6.2657 -4.4111 0.1502 24 6 5.5323 -2.3387 1.3375 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.6905 0.2972 2.4844 33 1 1.6239 -1.0228 3.2290 34 1 3.4017 2.7048 5.4782 35 1 1.1132 -3.0481 -0.3327 36 1 1.5430 -2.0131 -1.7281 37 1 1.7884 -4.9083 -1.5044 38 1 2.2166 -3.8739 -2.8997 39 1 4.4630 -3.7202 -2.2535 40 1 4.1015 -5.2530 -1.4010 41 1 5.7738 -2.5382 -0.7938 42 1 5.9096 -5.0152 0.9847 43 1 7.3077 -4.1383 0.3174 44 1 6.1840 -4.9836 -0.7737 45 1 6.5742 -2.0656 1.5049 46 1 4.9283 -1.4348 1.2596 47 1 5.1762 -2.9429 2.1720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931326057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:10 Heat of formation + Delta-G solvation = -21.005308 kcal Electronic energy + Delta-G solvation = -24740.112547 eV Core-core repulsion = 21537.367574 eV Total energy + Delta-G solvation = -3202.744974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26513 -37.92977 -35.97829 -34.29430 -32.71194 -30.93508 -29.93726 -29.17018 -27.63315 -26.76424 -26.45524 -23.30661 -21.99188 -21.41708 -20.57129 -19.93117 -18.08708 -16.91561 -16.83670 -16.20029 -15.43329 -14.75433 -14.50907 -14.18258 -13.97661 -13.63899 -13.43528 -13.14934 -12.91554 -12.65817 -12.57084 -12.45106 -12.11085 -11.80558 -11.69136 -11.60711 -11.57452 -11.28915 -11.15238 -11.07610 -10.90677 -10.83523 -10.70772 -10.53221 -10.48371 -10.31290 -10.13757 -10.02286 -9.40106 -8.74916 -8.53535 -8.23977 -7.57733 -6.04042 -4.00793 3.31465 3.37366 3.40121 3.45344 3.63934 4.23901 4.43611 4.64623 4.66655 4.91786 5.13362 5.20457 5.24103 5.27084 5.30495 5.33974 5.50088 5.52692 5.56535 5.62704 5.64963 5.79294 5.82236 5.89430 5.97431 5.99170 6.06725 6.13258 6.16160 6.22426 6.27153 6.31553 6.33870 6.55133 6.57823 6.79858 6.93316 7.01276 7.02348 7.06540 7.30445 7.50805 7.68100 8.39235 8.53778 8.99984 9.15770 9.57531 11.09206 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.006313 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.156510 B = 4434.290459 C = 5249.465210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.590 5.590 5 C 0.217 3.783 6 C -0.518 4.518 7 H 0.075 0.925 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.518 3.482 15 O -0.514 6.514 16 C 0.045 3.955 17 H 0.068 0.932 18 C -0.115 4.115 19 C -0.122 4.122 20 C 0.032 3.968 21 N -0.481 5.481 22 C 0.071 3.929 23 C -0.139 4.139 24 C -0.140 4.140 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 -9.331 -15.393 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.323 5.323 5 C 0.097 3.903 6 C -0.557 4.557 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.303 3.697 15 O -0.389 6.389 16 C -0.067 4.067 17 H 0.086 0.914 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.096 4.096 21 N -0.206 5.206 22 C -0.038 4.038 23 C -0.196 4.196 24 C -0.197 4.197 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.296 -9.852 -14.223 17.454 hybrid contribution -0.334 0.623 -0.040 0.708 sum -2.630 -9.229 -14.264 17.191 Atomic orbital electron populations 1.22179 0.95759 1.01758 1.02370 1.21131 0.93960 0.94285 0.88155 1.22142 1.01606 0.95513 1.02232 1.47965 1.50040 1.26684 1.07630 1.19576 0.96159 0.95027 0.79553 1.21336 1.09170 1.22313 1.02846 0.90652 1.24839 0.95998 0.94817 0.97382 1.69893 1.34671 1.28503 1.20739 0.86914 0.83576 0.78151 0.81421 1.20036 1.21255 1.19153 1.19819 0.79165 0.80623 0.90069 1.90673 1.51383 1.57549 1.39261 1.22603 0.95287 0.93368 0.95427 0.91424 1.22388 0.96774 0.97483 0.98692 1.22294 0.95750 0.98490 0.99520 1.23113 0.96056 1.00084 0.90324 1.65154 1.07122 1.18955 1.29412 1.21822 0.87512 0.96221 0.98198 1.21788 0.98779 0.97172 1.01875 1.22126 0.99919 1.00526 0.97136 0.91614 0.92158 0.92811 0.90326 0.92631 0.93373 0.90049 0.95312 0.94823 0.92722 0.90478 0.90514 0.90914 0.91322 0.94100 0.90007 0.94901 0.91603 0.92449 0.93297 0.93973 0.92184 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.17 37.16 0.34 -1.89 16 2 C 0.13 2.05 2.69 -67.93 -0.18 1.86 16 3 C -0.16 -2.63 8.47 37.16 0.31 -2.31 16 4 N -0.59 -11.92 2.39 -167.48 -0.40 -12.32 16 5 C 0.22 5.23 3.66 -5.20 -0.02 5.21 16 6 C -0.52 -14.46 8.38 -34.44 -0.29 -14.75 16 7 H 0.08 2.31 7.87 -52.49 -0.41 1.89 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 10 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 11 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.52 10.52 5.17 -10.99 -0.06 10.47 16 15 O -0.51 -12.44 12.38 5.55 0.07 -12.37 16 16 C 0.05 0.71 1.44 -67.24 -0.10 0.61 16 17 H 0.07 1.03 7.52 -51.93 -0.39 0.64 16 18 C -0.12 -1.42 5.44 -25.35 -0.14 -1.56 16 19 C -0.12 -1.26 7.00 -25.35 -0.18 -1.44 16 20 C 0.03 0.37 5.53 -2.19 -0.01 0.36 16 21 N -0.48 -7.39 4.63 -215.62 -1.00 -8.39 16 22 C 0.07 1.08 2.44 -67.72 -0.17 0.91 16 23 C -0.14 -1.76 9.15 37.16 0.34 -1.42 16 24 C -0.14 -2.61 7.55 37.15 0.28 -2.33 16 25 H 0.06 1.01 6.66 -51.93 -0.35 0.67 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.08 1.06 4.03 -51.93 -0.21 0.85 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.60 6.92 -51.93 -0.36 1.25 16 32 H 0.03 0.67 5.48 -51.93 -0.28 0.38 16 33 H 0.03 0.88 6.85 -51.93 -0.36 0.53 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 36 H 0.08 0.79 6.66 -51.93 -0.35 0.45 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.44 7.90 -51.92 -0.41 0.03 16 40 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 41 H 0.03 0.47 7.97 -51.93 -0.41 0.06 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.53 7.07 -51.93 -0.37 0.16 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.29 5.43 -51.93 -0.28 1.01 16 47 H 0.08 1.79 6.71 -51.93 -0.35 1.44 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -32.18 347.36 -8.25 -40.44 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.31 Total: 1.49 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 0.04 Total: -4.31 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.62 Total: -47.46 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.37 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.18 -8.25 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.432 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds