Wall clock time and date at job start Tue Mar 31 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49598 * 55.00247 * 3 2 1 5 5 C 1.53196 * 109.49885 * 294.93995 * 3 2 1 6 6 N 1.46930 * 108.77237 * 185.44730 * 5 3 2 7 7 C 1.34772 * 120.60810 * 233.57836 * 6 5 3 8 8 O 1.21287 * 119.99286 * 359.97235 * 7 6 5 9 9 C 1.50693 * 120.00333 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.47036 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47216 * 175.00056 * 10 9 7 12 12 C 1.53004 * 109.47244 * 294.99836 * 10 9 7 13 13 C 1.46931 * 118.76499 * 53.55207 * 6 5 3 14 14 C 1.53197 * 108.77552 * 306.41498 * 13 6 5 15 15 C 1.53037 * 109.49694 * 175.06518 * 3 2 1 16 16 H 1.09002 * 109.45920 * 61.30996 * 15 3 2 17 17 N 1.46500 * 109.46163 * 301.33960 * 15 3 2 18 18 C 1.36941 * 119.99966 * 154.99932 * 17 15 3 19 19 H 1.07999 * 120.00158 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99957 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99807 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47382 * 59.99743 * 22 20 18 24 24 H 1.48506 * 109.47318 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47396 * 299.99593 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 31 31 H 1.08998 * 109.58251 * 305.20057 * 5 3 2 32 32 H 1.08996 * 109.58381 * 65.62524 * 5 3 2 33 33 H 1.09001 * 109.47691 * 299.99729 * 9 7 6 34 34 H 1.09002 * 109.47350 * 60.00233 * 9 7 6 35 35 H 1.08998 * 109.47539 * 54.99970 * 10 9 7 36 36 H 1.09003 * 109.47288 * 59.99889 * 11 10 9 37 37 H 1.09001 * 109.47256 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47083 * 300.00078 * 11 10 9 39 39 H 1.09001 * 109.47196 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46962 * 300.00488 * 12 10 9 41 41 H 1.09006 * 109.46944 * 60.00174 * 12 10 9 42 42 H 1.09000 * 109.58758 * 186.62965 * 13 6 5 43 43 H 1.08995 * 109.70444 * 66.27131 * 13 6 5 44 44 H 1.08999 * 109.49545 * 294.68025 * 14 13 6 45 45 H 1.08998 * 109.52623 * 174.60414 * 14 13 6 46 46 H 0.96996 * 119.99915 * 334.99896 * 17 15 3 47 47 H 0.97000 * 119.99980 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2436 3.4649 -1.3501 7 6 1.4841 4.5571 -1.5658 8 8 0.2879 4.4412 -1.7289 9 6 2.1211 5.9223 -1.6042 10 6 1.0459 6.9796 -1.8631 11 6 1.6707 8.3737 -1.7785 12 6 0.4508 6.7712 -3.2572 13 6 3.6940 3.5892 -1.1508 14 6 4.0739 2.8880 0.1572 15 6 3.5654 1.4449 0.1241 16 1 4.0001 0.9265 -0.7305 17 7 3.9557 0.7614 1.3597 18 6 5.1939 0.1856 1.4619 19 1 5.8830 0.2357 0.6317 20 6 5.5636 -0.4625 2.6324 21 7 4.7237 -0.5240 3.6439 22 14 7.2529 -1.2473 2.7720 23 1 8.2980 -0.2078 2.5921 24 1 7.3998 -1.8710 4.1117 25 1 7.4037 -2.2876 1.7231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.9930 1.5390 -2.1547 32 1 0.5511 2.2169 -1.3556 33 1 2.6067 6.1238 -0.6494 34 1 2.8621 5.9551 -2.4029 35 1 0.2587 6.8882 -1.1148 36 1 2.4578 8.4651 -2.5270 37 1 0.9046 9.1270 -1.9625 38 1 2.0946 8.5222 -0.7854 39 1 -0.3148 7.5247 -3.4418 40 1 1.2380 6.8625 -4.0056 41 1 0.0057 5.7780 -3.3175 42 1 3.9659 4.6432 -1.0926 43 1 4.2207 3.1214 -1.9825 44 1 3.6204 3.4143 0.9971 45 1 5.1580 2.8892 0.2697 46 1 3.3370 0.7167 2.1054 47 1 4.9820 -0.9765 4.4621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037765794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:23 Heat of formation + Delta-G solvation = -53.070887 kcal Electronic energy + Delta-G solvation = -23464.220907 eV Core-core repulsion = 20260.085465 eV Total energy + Delta-G solvation = -3204.135441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23713 -38.04213 -35.60432 -34.70451 -33.76701 -31.71811 -29.56936 -29.40655 -27.67108 -27.19118 -24.81854 -23.82300 -22.76151 -20.85707 -20.66500 -19.66316 -18.71119 -17.14540 -16.95804 -16.05921 -15.51365 -15.03145 -14.65676 -14.11494 -13.99197 -13.77116 -13.65811 -13.44628 -13.28050 -13.08192 -12.77349 -12.41646 -12.19586 -12.16071 -11.92479 -11.83097 -11.59092 -11.28273 -11.17157 -10.96598 -10.91957 -10.85350 -10.76187 -10.66107 -10.33322 -10.23935 -10.14993 -9.74929 -9.59369 -9.49914 -8.90543 -8.41484 -6.97886 -5.78947 -3.07727 2.75522 3.15540 3.41349 3.46265 3.47186 4.54330 4.56835 4.66322 4.81027 5.01871 5.14763 5.23677 5.28779 5.36590 5.39694 5.44463 5.49772 5.52289 5.57128 5.58822 5.61301 5.69960 5.70870 5.77337 5.87129 5.90430 6.00979 6.04033 6.13713 6.16680 6.25725 6.32219 6.35206 6.37088 6.41866 6.47025 6.59329 6.69647 6.83474 6.96598 7.05933 7.58367 7.66552 8.32155 8.39308 9.50642 10.08236 10.43172 11.43429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.004053 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.043182 B = 6907.082184 C = 7782.338549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.608 5.608 7 C 0.513 3.487 8 O -0.548 6.548 9 C -0.137 4.137 10 C -0.081 4.081 11 C -0.148 4.148 12 C -0.152 4.152 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.720 5.720 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 12.313 -11.978 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.340 5.340 7 C 0.302 3.698 8 O -0.426 6.426 9 C -0.177 4.177 10 C -0.100 4.100 11 C -0.205 4.205 12 C -0.209 4.209 13 C -0.017 4.017 14 C -0.193 4.193 15 C 0.073 3.927 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.089 12.152 -12.066 18.175 hybrid contribution 1.025 -0.459 0.516 1.236 sum -5.064 11.694 -11.550 17.198 Atomic orbital electron populations 1.21840 0.96822 1.01002 1.01294 1.21452 0.94369 0.95756 1.03419 1.21774 0.97585 0.96229 0.96805 0.91296 1.21724 0.99393 0.81655 0.97621 1.48217 1.08512 1.06853 1.70458 1.20662 0.86952 0.86230 0.75942 1.90626 1.14979 1.86653 1.50369 1.21798 0.99675 0.92229 1.03962 1.20866 0.96972 0.93180 0.98979 1.21866 1.00726 0.96228 1.01686 1.21952 1.00324 1.03299 0.95358 1.21860 0.79537 1.01154 0.99137 1.22683 1.02159 0.99314 0.95160 1.20179 0.90819 0.90523 0.91167 0.93491 1.42406 1.16441 1.64474 1.12734 1.19170 0.91805 1.27456 0.98617 0.91306 1.24722 0.98115 1.01511 0.96437 1.69649 1.35273 1.48330 1.04766 0.86304 0.84157 0.79179 0.76738 1.21334 1.21761 1.21312 0.93011 0.93232 0.93193 0.89826 0.92501 0.91900 0.89207 0.88926 0.89146 0.90494 0.92723 0.92534 0.92657 0.93160 0.93533 0.90641 0.90476 0.91568 0.92223 0.90608 0.78208 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.16 0.36 -1.79 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.97 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.74 5.33 -3.71 -0.02 1.72 16 6 N -0.61 -8.44 2.97 -172.76 -0.51 -8.95 16 7 C 0.51 7.18 7.41 -10.99 -0.08 7.10 16 8 O -0.55 -9.21 13.38 5.55 0.07 -9.13 16 9 C -0.14 -1.43 3.52 -27.89 -0.10 -1.53 16 10 C -0.08 -0.83 2.57 -90.62 -0.23 -1.06 16 11 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 12 C -0.15 -1.60 8.93 37.16 0.33 -1.27 16 13 C 0.11 1.34 6.34 -3.71 -0.02 1.32 16 14 C -0.15 -2.47 5.66 -26.61 -0.15 -2.63 16 15 C 0.18 3.42 2.19 -67.89 -0.15 3.27 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -17.06 4.33 -53.39 -0.23 -17.30 16 18 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 22 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.63 7.22 -51.93 -0.37 1.25 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.38 5.72 -51.93 -0.30 1.09 16 33 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 34 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 35 H 0.08 0.91 7.95 -51.93 -0.41 0.49 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.98 5.95 -51.93 -0.31 0.67 16 42 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.38 9.87 7.51 -40.82 -0.31 9.56 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -29.72 360.79 -8.45 -38.16 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.63 Total: 8.16 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.28 Total: -6.47 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.02 Total: -53.00 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.72 -8.45 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.910 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds