Wall clock time and date at job start Tue Mar 31 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49598 * 55.00247 * 3 2 1 5 5 C 1.53196 * 109.49885 * 294.93995 * 3 2 1 6 6 N 1.46930 * 108.77237 * 185.44730 * 5 3 2 7 7 C 1.34772 * 120.60810 * 233.57836 * 6 5 3 8 8 O 1.21287 * 119.99286 * 359.97235 * 7 6 5 9 9 C 1.50693 * 120.00333 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.47036 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47216 * 175.00056 * 10 9 7 12 12 C 1.53004 * 109.47244 * 294.99836 * 10 9 7 13 13 C 1.46931 * 118.76499 * 53.55207 * 6 5 3 14 14 C 1.53197 * 108.77552 * 306.41498 * 13 6 5 15 15 C 1.53037 * 109.49694 * 175.06518 * 3 2 1 16 16 H 1.09002 * 109.45920 * 61.30996 * 15 3 2 17 17 N 1.46500 * 109.46163 * 301.33960 * 15 3 2 18 18 C 1.36941 * 119.99966 * 154.99932 * 17 15 3 19 19 H 1.07999 * 120.00158 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99957 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99807 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47382 * 59.99743 * 22 20 18 24 24 H 1.48506 * 109.47318 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47396 * 299.99593 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 31 31 H 1.08998 * 109.58251 * 305.20057 * 5 3 2 32 32 H 1.08996 * 109.58381 * 65.62524 * 5 3 2 33 33 H 1.09001 * 109.47691 * 299.99729 * 9 7 6 34 34 H 1.09002 * 109.47350 * 60.00233 * 9 7 6 35 35 H 1.08998 * 109.47539 * 54.99970 * 10 9 7 36 36 H 1.09003 * 109.47288 * 59.99889 * 11 10 9 37 37 H 1.09001 * 109.47256 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47083 * 300.00078 * 11 10 9 39 39 H 1.09001 * 109.47196 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46962 * 300.00488 * 12 10 9 41 41 H 1.09006 * 109.46944 * 60.00174 * 12 10 9 42 42 H 1.09000 * 109.58758 * 186.62965 * 13 6 5 43 43 H 1.08995 * 109.70444 * 66.27131 * 13 6 5 44 44 H 1.08999 * 109.49545 * 294.68025 * 14 13 6 45 45 H 1.08998 * 109.52623 * 174.60414 * 14 13 6 46 46 H 0.96996 * 119.99915 * 334.99896 * 17 15 3 47 47 H 0.97000 * 119.99980 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2436 3.4649 -1.3501 7 6 1.4841 4.5571 -1.5658 8 8 0.2879 4.4412 -1.7289 9 6 2.1211 5.9223 -1.6042 10 6 1.0459 6.9796 -1.8631 11 6 1.6707 8.3737 -1.7785 12 6 0.4508 6.7712 -3.2572 13 6 3.6940 3.5892 -1.1508 14 6 4.0739 2.8880 0.1572 15 6 3.5654 1.4449 0.1241 16 1 4.0001 0.9265 -0.7305 17 7 3.9557 0.7614 1.3597 18 6 5.1939 0.1856 1.4619 19 1 5.8830 0.2357 0.6317 20 6 5.5636 -0.4625 2.6324 21 7 4.7237 -0.5240 3.6439 22 14 7.2529 -1.2473 2.7720 23 1 8.2980 -0.2078 2.5921 24 1 7.3998 -1.8710 4.1117 25 1 7.4037 -2.2876 1.7231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.9930 1.5390 -2.1547 32 1 0.5511 2.2169 -1.3556 33 1 2.6067 6.1238 -0.6494 34 1 2.8621 5.9551 -2.4029 35 1 0.2587 6.8882 -1.1148 36 1 2.4578 8.4651 -2.5270 37 1 0.9046 9.1270 -1.9625 38 1 2.0946 8.5222 -0.7854 39 1 -0.3148 7.5247 -3.4418 40 1 1.2380 6.8625 -4.0056 41 1 0.0057 5.7780 -3.3175 42 1 3.9659 4.6432 -1.0926 43 1 4.2207 3.1214 -1.9825 44 1 3.6204 3.4143 0.9971 45 1 5.1580 2.8892 0.2697 46 1 3.3370 0.7167 2.1054 47 1 4.9820 -0.9765 4.4621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037765794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:22 Heat of formation + Delta-G solvation = -69.664310 kcal Electronic energy + Delta-G solvation = -23464.940452 eV Core-core repulsion = 20260.085465 eV Total energy + Delta-G solvation = -3204.854986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38022 -39.32773 -36.53623 -36.09053 -35.30404 -33.43298 -31.05023 -30.64300 -28.79319 -27.91005 -26.40855 -25.09958 -24.33124 -22.21361 -21.65831 -20.94878 -19.82761 -19.02256 -18.10320 -17.13145 -16.74833 -16.55374 -15.86742 -15.60485 -15.39342 -14.95404 -14.73837 -14.65938 -14.65402 -14.42416 -13.99665 -13.60939 -13.24902 -13.11095 -13.00422 -12.96753 -12.79851 -12.71302 -12.64891 -12.51956 -12.22289 -12.12804 -11.89984 -11.84615 -11.67924 -11.57507 -11.53056 -11.50981 -11.08283 -10.85794 -10.57775 -9.59474 -8.94894 -7.89880 -5.17493 1.49294 1.51347 1.57195 1.68590 2.08103 2.59046 3.43145 3.56838 3.77898 3.83052 3.90710 4.02488 4.06509 4.09722 4.26032 4.35527 4.36707 4.46272 4.47385 4.64466 4.68757 4.72222 4.76449 4.78676 4.82131 4.86389 4.88336 4.91918 5.01104 5.06988 5.08192 5.14344 5.17721 5.28628 5.33801 5.39037 5.46508 5.50317 5.53430 5.55566 5.59703 5.69795 6.31235 6.50039 7.24088 7.37818 8.14206 8.37478 9.33526 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.004053 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.043182 B = 6907.082184 C = 7782.338549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.049 0.951 5 C 0.126 3.874 6 N -0.611 5.611 7 C 0.508 3.492 8 O -0.580 6.580 9 C -0.132 4.132 10 C -0.082 4.082 11 C -0.142 4.142 12 C -0.149 4.149 13 C 0.114 3.886 14 C -0.143 4.143 15 C 0.178 3.822 16 H 0.046 0.954 17 N -0.732 5.732 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.277 1.277 24 H -0.301 1.301 25 H -0.280 1.280 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 13.887 -14.109 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.343 5.343 7 C 0.298 3.702 8 O -0.461 6.461 9 C -0.172 4.172 10 C -0.101 4.101 11 C -0.199 4.199 12 C -0.207 4.207 13 C -0.008 4.008 14 C -0.184 4.184 15 C 0.070 3.930 16 H 0.064 0.936 17 N -0.370 5.370 18 C -0.363 4.363 19 H 0.096 0.904 20 C -0.268 4.268 21 N -0.623 5.623 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.228 1.228 25 H -0.206 1.206 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.129 0.871 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.201 0.799 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.969 13.760 -14.254 20.425 hybrid contribution 0.612 -0.929 1.122 1.580 sum -4.357 12.831 -13.132 18.869 Atomic orbital electron populations 1.21770 0.94962 1.01869 1.01617 1.21360 0.96003 0.95357 1.01854 1.21618 0.95896 0.96324 0.97362 0.93273 1.21568 0.99177 0.82415 0.96586 1.48308 1.09092 1.06529 1.70368 1.21348 0.86609 0.87307 0.74910 1.90622 1.16574 1.87184 1.51710 1.21874 1.00006 0.89665 1.05637 1.20860 0.96543 0.94618 0.98042 1.21816 1.01078 0.94555 1.02487 1.21905 1.00890 1.01789 0.96069 1.21901 0.78744 1.02918 0.97259 1.22477 1.01308 0.97566 0.97063 1.20422 0.92263 0.91490 0.88860 0.93556 1.42588 1.15461 1.65076 1.13924 1.19567 0.92583 1.25812 0.98371 0.90430 1.25480 1.01573 1.03192 0.96549 1.69818 1.37130 1.50114 1.05189 0.85291 0.80405 0.78440 0.76108 1.20324 1.22789 1.20578 0.93700 0.91829 0.92094 0.93539 0.91761 0.90481 0.89844 0.87556 0.86511 0.92791 0.91353 0.92171 0.92134 0.92599 0.92035 0.93416 0.87125 0.89744 0.93704 0.91406 0.79872 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.67 71.98 0.70 -3.34 16 2 C -0.11 -3.55 5.31 30.60 0.16 -3.38 16 3 C -0.09 -3.02 1.92 -10.72 -0.02 -3.04 16 4 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 5 C 0.13 3.52 5.33 86.36 0.46 3.98 16 6 N -0.61 -15.65 2.97 -818.89 -2.43 -18.09 16 7 C 0.51 13.24 7.41 87.66 0.65 13.89 16 8 O -0.58 -19.14 13.38 -3.05 -0.04 -19.19 16 9 C -0.13 -2.36 3.52 29.85 0.11 -2.25 16 10 C -0.08 -1.50 2.57 -10.79 -0.03 -1.53 16 11 C -0.14 -1.85 9.19 71.98 0.66 -1.19 16 12 C -0.15 -2.87 8.93 71.98 0.64 -2.23 16 13 C 0.11 2.52 6.34 86.36 0.55 3.07 16 14 C -0.14 -4.47 5.66 30.67 0.17 -4.30 16 15 C 0.18 6.57 2.19 45.02 0.10 6.67 16 16 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 17 N -0.73 -35.33 4.33 -322.82 -1.40 -36.73 16 18 C -0.23 -12.30 9.93 84.03 0.83 -11.47 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 22 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.60 6.70 -2.39 -0.02 1.58 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.88 7.22 -2.39 -0.02 1.86 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.49 5.72 -2.39 -0.01 2.48 16 33 H 0.11 1.65 7.69 -2.39 -0.02 1.63 16 34 H 0.12 1.51 7.94 -2.39 -0.02 1.49 16 35 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 1.20 5.95 -2.38 -0.01 1.18 16 42 H 0.11 1.76 5.93 -2.39 -0.01 1.75 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 46 H 0.37 19.79 7.51 -92.71 -0.70 19.09 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -65.90 360.79 4.12 -61.79 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.23 Total: 32.47 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.45 Total: -8.93 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -3.55 Total: -113.44 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.04 Total: -19.19 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -65.90 4.12 -61.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.877 kcal (2) G-P(sol) polarization free energy of solvation -65.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds