Wall clock time and date at job start Tue Mar 31 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 H 1.08995 * 109.49383 * 54.94230 * 3 2 1 5 5 C 1.53195 * 109.50100 * 294.84128 * 3 2 1 6 6 N 1.46919 * 108.77438 * 185.41502 * 5 3 2 7 7 C 1.34779 * 120.62928 * 233.58688 * 6 5 3 8 8 O 1.21284 * 119.99998 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00461 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47345 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47344 * 64.99842 * 10 9 7 12 12 C 1.53003 * 109.46924 * 185.00308 * 10 9 7 13 13 C 1.46927 * 118.74240 * 53.60800 * 6 5 3 14 14 C 1.53187 * 108.77578 * 306.39019 * 13 6 5 15 15 C 1.53040 * 109.31071 * 54.63651 * 14 13 6 16 16 H 1.09000 * 109.44982 * 178.62327 * 15 14 13 17 17 N 1.46492 * 109.46346 * 58.65626 * 15 14 13 18 18 C 1.36935 * 120.00376 * 84.93006 * 17 15 14 19 19 H 1.08003 * 119.99724 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00063 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99887 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47058 * 299.99188 * 1 2 3 28 28 H 1.08997 * 109.47301 * 59.99909 * 1 2 3 29 29 H 1.09012 * 109.47251 * 240.00635 * 2 1 3 30 30 H 1.08997 * 109.47743 * 120.00725 * 2 1 3 31 31 H 1.09002 * 109.58517 * 305.19935 * 5 3 2 32 32 H 1.09001 * 109.58254 * 65.48382 * 5 3 2 33 33 H 1.08998 * 109.46801 * 300.00136 * 9 7 6 34 34 H 1.09006 * 109.46547 * 59.99900 * 9 7 6 35 35 H 1.09001 * 109.47074 * 304.99728 * 10 9 7 36 36 H 1.08999 * 109.46840 * 60.00375 * 11 10 9 37 37 H 1.08995 * 109.47110 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.47482 * 300.00636 * 11 10 9 39 39 H 1.09000 * 109.47071 * 59.99871 * 12 10 9 40 40 H 1.09003 * 109.46939 * 179.97438 * 12 10 9 41 41 H 1.09001 * 109.46771 * 299.99606 * 12 10 9 42 42 H 1.08992 * 109.58384 * 66.18028 * 13 6 5 43 43 H 1.09006 * 109.58441 * 186.46115 * 13 6 5 44 44 H 1.09006 * 109.49710 * 294.68243 * 14 13 6 45 45 H 1.08994 * 109.49729 * 174.58581 * 14 13 6 46 46 H 0.97009 * 119.99477 * 264.93591 * 17 15 14 47 47 H 0.97006 * 119.99732 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9821 0.8411 5 6 1.6384 2.1269 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4856 4.5565 -1.5679 8 8 0.2895 4.4406 -1.7322 9 6 2.1224 5.9219 -1.6057 10 6 1.0474 6.9791 -1.8655 11 6 0.0750 7.0186 -0.6850 12 6 1.7084 8.3493 -2.0279 13 6 3.6951 3.5889 -1.1498 14 6 4.0736 2.8882 0.1588 15 6 3.5652 1.4451 0.1256 16 1 3.8546 0.9371 1.0456 17 7 4.1507 0.7477 -1.0219 18 6 5.3885 0.1720 -0.9147 19 1 5.9330 0.2318 0.0161 20 6 5.9434 -0.4884 -2.0022 21 7 7.1330 -1.0422 -1.8989 22 14 5.0013 -0.5925 -3.6119 23 1 5.3439 0.5757 -4.4624 24 1 3.5428 -0.5908 -3.3328 25 1 5.3683 -1.8450 -4.3202 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.9963 1.5379 -2.1549 32 1 0.5529 2.2139 -1.3595 33 1 2.6064 6.1235 -0.6501 34 1 2.8649 5.9544 -2.4031 35 1 0.5034 6.7279 -2.7761 36 1 0.6190 7.2698 0.2255 37 1 -0.6906 7.7720 -0.8700 38 1 -0.3959 6.0424 -0.5693 39 1 2.4012 8.3211 -2.8690 40 1 0.9426 9.1025 -2.2135 41 1 2.2524 8.6005 -1.1174 42 1 4.2207 3.1192 -1.9811 43 1 3.9671 4.6430 -1.0943 44 1 3.6192 3.4149 0.9981 45 1 5.1576 2.8895 0.2719 46 1 3.6614 0.6937 -1.8578 47 1 7.5209 -1.5034 -2.6591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037765798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:26 Heat of formation + Delta-G solvation = -47.002612 kcal Electronic energy + Delta-G solvation = -23984.329376 eV Core-core repulsion = 20780.457074 eV Total energy + Delta-G solvation = -3203.872301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28266 -38.23369 -35.58453 -34.55067 -33.85563 -31.77628 -29.86448 -29.46692 -27.85013 -27.17612 -24.86030 -23.90905 -23.14251 -20.90758 -20.71802 -19.31827 -18.23023 -17.90385 -16.89255 -15.99931 -15.60373 -14.79545 -14.71134 -14.42531 -14.15303 -13.97510 -13.67328 -13.39528 -13.25052 -13.20654 -12.57372 -12.46763 -12.36586 -12.30205 -11.97070 -11.92248 -11.59685 -11.29245 -11.24221 -11.05498 -10.97133 -10.91924 -10.82820 -10.68910 -10.36519 -10.33076 -10.22990 -9.83360 -9.58098 -9.47647 -8.97163 -8.32218 -7.30715 -5.81594 -3.16727 2.79049 3.20224 3.31867 3.34911 3.41628 4.53942 4.58485 4.68860 4.82504 4.98894 5.08752 5.17816 5.23761 5.32343 5.37631 5.42352 5.49820 5.53314 5.53924 5.56183 5.59970 5.65023 5.66853 5.77526 5.79439 5.87215 5.90447 6.01762 6.03445 6.07400 6.19793 6.25638 6.27771 6.31154 6.39160 6.44478 6.52506 6.56693 6.66533 6.75792 6.90679 7.64689 7.94972 8.35663 8.37705 9.15968 9.88681 10.08643 11.36863 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.005241 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.020832 B = 5340.898376 C = 6042.101794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.117 3.883 6 N -0.606 5.606 7 C 0.513 3.487 8 O -0.551 6.551 9 C -0.137 4.137 10 C -0.080 4.080 11 C -0.152 4.152 12 C -0.148 4.148 13 C 0.111 3.889 14 C -0.149 4.149 15 C 0.184 3.816 16 H 0.059 0.941 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.933 5.933 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.278 1.278 25 H -0.291 1.291 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 13.697 2.826 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.089 0.911 5 C -0.005 4.005 6 N -0.338 5.338 7 C 0.301 3.699 8 O -0.430 6.430 9 C -0.176 4.176 10 C -0.099 4.099 11 C -0.209 4.209 12 C -0.205 4.205 13 C -0.011 4.011 14 C -0.190 4.190 15 C 0.075 3.925 16 H 0.077 0.923 17 N -0.387 5.387 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.581 5.581 22 Si 0.708 3.292 23 H -0.212 1.212 24 H -0.204 1.204 25 H -0.217 1.217 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.727 13.529 2.814 18.124 hybrid contribution -0.270 -0.212 -1.249 1.296 sum -11.997 13.317 1.565 17.992 Atomic orbital electron populations 1.21852 0.96631 1.01145 1.01455 1.21438 0.94486 0.95760 1.03284 1.21794 0.97386 0.96172 0.97248 0.91063 1.21644 0.99091 0.81986 0.97827 1.48211 1.08783 1.06588 1.70258 1.20664 0.86917 0.86239 0.76043 1.90616 1.14990 1.86658 1.50687 1.21797 0.99617 0.92170 1.04057 1.20857 0.95500 0.93449 1.00118 1.21948 0.98876 1.03195 0.96912 1.21866 1.00541 0.96449 1.01643 1.21747 0.79094 1.00441 0.99821 1.22493 1.02267 0.98770 0.95505 1.20187 0.89440 0.90717 0.92195 0.92254 1.42842 1.19617 1.65792 1.10468 1.19058 0.91866 1.26905 0.99205 0.89163 1.24623 0.96433 1.00271 0.97499 1.69691 1.16277 1.41285 1.30847 0.86679 0.79630 0.77472 0.85459 1.21179 1.20409 1.21715 0.93067 0.93137 0.92877 0.91134 0.91555 0.91842 0.89326 0.88993 0.89071 0.90599 0.93481 0.93205 0.90626 0.92708 0.92560 0.92665 0.90343 0.90757 0.92941 0.90219 0.80595 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.11 -1.69 5.19 -26.73 -0.14 -1.82 16 3 C -0.11 -1.62 2.14 -90.49 -0.19 -1.82 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.12 1.86 5.03 -3.71 -0.02 1.84 16 6 N -0.61 -9.11 2.97 -172.77 -0.51 -9.62 16 7 C 0.51 7.52 7.42 -10.98 -0.08 7.44 16 8 O -0.55 -9.50 13.38 5.55 0.07 -9.43 16 9 C -0.14 -1.51 3.52 -27.88 -0.10 -1.61 16 10 C -0.08 -0.85 2.57 -90.62 -0.23 -1.09 16 11 C -0.15 -1.67 8.93 37.15 0.33 -1.34 16 12 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 13 C 0.11 1.62 6.08 -3.71 -0.02 1.59 16 14 C -0.15 -2.30 5.78 -26.61 -0.15 -2.45 16 15 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 16 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 17 N -0.74 -15.99 3.53 -53.39 -0.19 -16.18 16 18 C -0.24 -6.31 10.41 -15.06 -0.16 -6.47 16 19 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 22 Si 0.88 21.48 27.73 -169.99 -4.71 16.77 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 29 H 0.07 1.22 7.70 -51.92 -0.40 0.82 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.10 6.64 -51.93 -0.34 0.76 16 32 H 0.09 1.42 5.73 -51.93 -0.30 1.12 16 33 H 0.09 0.90 7.70 -51.93 -0.40 0.50 16 34 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 35 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.02 5.95 -51.93 -0.31 0.71 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 43 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.36 7.84 3.80 -40.82 -0.16 7.69 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -29.96 354.07 -8.01 -37.97 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.45 Total: 7.80 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.33 Total: -5.05 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.07 Total: -53.39 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.96 -8.01 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.031 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds