Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 H 1.08995 * 109.49383 * 54.94230 * 3 2 1 5 5 C 1.53195 * 109.50100 * 294.84128 * 3 2 1 6 6 N 1.46919 * 108.77438 * 185.41502 * 5 3 2 7 7 C 1.34779 * 120.62928 * 233.58688 * 6 5 3 8 8 O 1.21284 * 119.99998 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00461 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47345 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47344 * 64.99842 * 10 9 7 12 12 C 1.53003 * 109.46924 * 185.00308 * 10 9 7 13 13 C 1.46927 * 118.74240 * 53.60800 * 6 5 3 14 14 C 1.53187 * 108.77578 * 306.39019 * 13 6 5 15 15 C 1.53040 * 109.31071 * 54.63651 * 14 13 6 16 16 H 1.09000 * 109.44982 * 178.62327 * 15 14 13 17 17 N 1.46492 * 109.46346 * 58.65626 * 15 14 13 18 18 C 1.36935 * 120.00376 * 84.93006 * 17 15 14 19 19 H 1.08003 * 119.99724 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00063 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99887 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47058 * 299.99188 * 1 2 3 28 28 H 1.08997 * 109.47301 * 59.99909 * 1 2 3 29 29 H 1.09012 * 109.47251 * 240.00635 * 2 1 3 30 30 H 1.08997 * 109.47743 * 120.00725 * 2 1 3 31 31 H 1.09002 * 109.58517 * 305.19935 * 5 3 2 32 32 H 1.09001 * 109.58254 * 65.48382 * 5 3 2 33 33 H 1.08998 * 109.46801 * 300.00136 * 9 7 6 34 34 H 1.09006 * 109.46547 * 59.99900 * 9 7 6 35 35 H 1.09001 * 109.47074 * 304.99728 * 10 9 7 36 36 H 1.08999 * 109.46840 * 60.00375 * 11 10 9 37 37 H 1.08995 * 109.47110 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.47482 * 300.00636 * 11 10 9 39 39 H 1.09000 * 109.47071 * 59.99871 * 12 10 9 40 40 H 1.09003 * 109.46939 * 179.97438 * 12 10 9 41 41 H 1.09001 * 109.46771 * 299.99606 * 12 10 9 42 42 H 1.08992 * 109.58384 * 66.18028 * 13 6 5 43 43 H 1.09006 * 109.58441 * 186.46115 * 13 6 5 44 44 H 1.09006 * 109.49710 * 294.68243 * 14 13 6 45 45 H 1.08994 * 109.49729 * 174.58581 * 14 13 6 46 46 H 0.97009 * 119.99477 * 264.93591 * 17 15 14 47 47 H 0.97006 * 119.99732 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9821 0.8411 5 6 1.6384 2.1269 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4856 4.5565 -1.5679 8 8 0.2895 4.4406 -1.7322 9 6 2.1224 5.9219 -1.6057 10 6 1.0474 6.9791 -1.8655 11 6 0.0750 7.0186 -0.6850 12 6 1.7084 8.3493 -2.0279 13 6 3.6951 3.5889 -1.1498 14 6 4.0736 2.8882 0.1588 15 6 3.5652 1.4451 0.1256 16 1 3.8546 0.9371 1.0456 17 7 4.1507 0.7477 -1.0219 18 6 5.3885 0.1720 -0.9147 19 1 5.9330 0.2318 0.0161 20 6 5.9434 -0.4884 -2.0022 21 7 7.1330 -1.0422 -1.8989 22 14 5.0013 -0.5925 -3.6119 23 1 5.3439 0.5757 -4.4624 24 1 3.5428 -0.5908 -3.3328 25 1 5.3683 -1.8450 -4.3202 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.9963 1.5379 -2.1549 32 1 0.5529 2.2139 -1.3595 33 1 2.6064 6.1235 -0.6501 34 1 2.8649 5.9544 -2.4031 35 1 0.5034 6.7279 -2.7761 36 1 0.6190 7.2698 0.2255 37 1 -0.6906 7.7720 -0.8700 38 1 -0.3959 6.0424 -0.5693 39 1 2.4012 8.3211 -2.8690 40 1 0.9426 9.1025 -2.2135 41 1 2.2524 8.6005 -1.1174 42 1 4.2207 3.1192 -1.9811 43 1 3.9671 4.6430 -1.0943 44 1 3.6192 3.4149 0.9981 45 1 5.1576 2.8895 0.2719 46 1 3.6614 0.6937 -1.8578 47 1 7.5209 -1.5034 -2.6591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037765798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -63.790802 kcal Electronic energy + Delta-G solvation = -23985.057366 eV Core-core repulsion = 20780.457074 eV Total energy + Delta-G solvation = -3204.600292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48396 -39.50629 -36.50805 -35.91764 -35.38728 -33.55851 -31.45333 -30.63915 -28.92756 -27.91760 -26.20373 -25.14142 -24.94156 -22.17618 -21.68636 -20.47135 -19.86812 -19.49592 -18.08215 -17.10256 -16.83898 -16.44427 -16.06080 -15.66795 -15.50263 -15.05119 -14.92053 -14.86168 -14.44957 -14.29222 -14.23925 -13.78327 -13.39989 -13.25853 -13.03180 -12.98636 -12.89900 -12.75026 -12.64231 -12.47508 -12.23830 -12.04119 -11.92088 -11.85189 -11.71440 -11.59983 -11.54530 -11.51828 -11.16808 -10.90937 -10.60590 -9.59811 -9.22882 -7.98711 -5.29087 1.35797 1.36287 1.43623 1.66938 2.05201 2.48314 3.33693 3.54039 3.61416 3.78316 3.89273 3.94957 4.01371 4.04351 4.24233 4.31007 4.34190 4.41721 4.43727 4.57144 4.65270 4.68609 4.72586 4.76689 4.81317 4.87514 4.88274 4.95705 5.02952 5.07139 5.13071 5.15537 5.18968 5.22510 5.28980 5.32577 5.37061 5.46636 5.49586 5.54587 5.66950 5.84233 6.25677 6.49598 7.12332 7.21681 7.89480 8.07587 9.23293 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.005241 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.020832 B = 5340.898376 C = 6042.101794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.089 0.911 5 C 0.120 3.880 6 N -0.608 5.608 7 C 0.509 3.491 8 O -0.579 6.579 9 C -0.133 4.133 10 C -0.080 4.080 11 C -0.150 4.150 12 C -0.142 4.142 13 C 0.115 3.885 14 C -0.142 4.142 15 C 0.176 3.824 16 H 0.048 0.952 17 N -0.742 5.742 18 C -0.211 4.211 19 H 0.063 0.937 20 C -0.057 4.057 21 N -0.984 5.984 22 Si 0.936 3.064 23 H -0.281 1.281 24 H -0.259 1.259 25 H -0.301 1.301 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.361 0.639 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 15.994 3.148 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.114 4.114 4 H 0.107 0.893 5 C -0.003 4.003 6 N -0.340 5.340 7 C 0.299 3.701 8 O -0.460 6.460 9 C -0.172 4.172 10 C -0.099 4.099 11 C -0.207 4.207 12 C -0.199 4.199 13 C -0.007 4.007 14 C -0.183 4.183 15 C 0.068 3.932 16 H 0.066 0.934 17 N -0.386 5.386 18 C -0.342 4.342 19 H 0.081 0.919 20 C -0.248 4.248 21 N -0.635 5.635 22 Si 0.766 3.234 23 H -0.208 1.208 24 H -0.185 1.185 25 H -0.228 1.228 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.157 15.870 3.161 20.856 hybrid contribution 0.111 -0.895 -1.233 1.527 sum -13.046 14.976 1.928 19.955 Atomic orbital electron populations 1.21785 0.94617 1.02002 1.01961 1.21409 0.96259 0.95292 1.01934 1.21689 0.95409 0.96548 0.97705 0.89322 1.21520 0.99043 0.82574 0.97208 1.48270 1.08948 1.06382 1.70398 1.21337 0.86585 0.87217 0.74917 1.90613 1.16423 1.87155 1.51773 1.21882 0.99872 0.89700 1.05780 1.20848 0.95333 0.94682 0.99014 1.21904 0.99252 1.01794 0.97737 1.21818 1.00740 0.94887 1.02503 1.21734 0.78532 1.02302 0.98126 1.22361 1.01489 0.97193 0.97240 1.20433 0.91008 0.91652 0.90116 0.93355 1.42807 1.18099 1.65883 1.11798 1.19013 0.92793 1.24851 0.97585 0.91918 1.25253 0.97413 1.01285 1.00892 1.69852 1.18410 1.43588 1.31688 0.85694 0.79365 0.76867 0.81520 1.20752 1.18458 1.22774 0.92122 0.91842 0.93081 0.93586 0.91776 0.93647 0.89397 0.86811 0.87508 0.92537 0.92211 0.92494 0.93399 0.92052 0.92062 0.91532 0.92799 0.87109 0.90204 0.91574 0.80488 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.67 71.98 0.70 -2.79 16 2 C -0.11 -3.22 5.19 30.59 0.16 -3.07 16 3 C -0.09 -2.72 2.14 -10.71 -0.02 -2.74 16 4 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 5 C 0.12 3.63 5.03 86.36 0.43 4.06 16 6 N -0.61 -16.93 2.97 -818.91 -2.43 -19.36 16 7 C 0.51 13.76 7.42 87.66 0.65 14.41 16 8 O -0.58 -19.24 13.38 -3.04 -0.04 -19.28 16 9 C -0.13 -2.49 3.52 29.85 0.11 -2.39 16 10 C -0.08 -1.49 2.57 -10.79 -0.03 -1.52 16 11 C -0.15 -2.96 8.93 71.98 0.64 -2.31 16 12 C -0.14 -1.90 9.19 71.98 0.66 -1.23 16 13 C 0.12 3.06 6.08 86.36 0.53 3.58 16 14 C -0.14 -4.07 5.78 30.67 0.18 -3.90 16 15 C 0.18 6.00 2.53 45.02 0.11 6.11 16 16 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 17 N -0.74 -31.69 3.53 -322.82 -1.14 -32.83 16 18 C -0.21 -11.24 10.41 84.03 0.87 -10.37 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 21 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 22 Si 0.94 44.91 27.73 68.60 1.90 46.81 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.26 -11.47 6.52 99.48 0.65 -10.82 16 25 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.24 6.70 -2.39 -0.02 1.22 16 29 H 0.05 1.56 7.70 -2.38 -0.02 1.54 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.54 6.64 -2.39 -0.02 1.52 16 32 H 0.09 2.71 5.73 -2.39 -0.01 2.69 16 33 H 0.11 1.69 7.70 -2.39 -0.02 1.67 16 34 H 0.11 1.72 7.94 -2.38 -0.02 1.70 16 35 H 0.06 1.27 7.96 -2.39 -0.02 1.25 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.22 5.95 -2.39 -0.01 1.21 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 1.72 7.74 -2.39 -0.02 1.71 16 43 H 0.11 2.14 5.93 -2.38 -0.01 2.12 16 44 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.36 15.48 3.80 -92.70 -0.35 15.13 16 47 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -66.17 354.07 4.56 -61.60 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.52 Total: 29.22 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.46 Total: -4.93 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -3.27 Total: -113.42 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.04 Total: -19.28 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -66.17 4.56 -61.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.186 kcal (2) G-P(sol) polarization free energy of solvation -66.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds