Wall clock time and date at job start Tue Mar 31 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.08998 * 109.52253 * 305.07135 * 3 2 1 5 5 C 1.53163 * 109.48277 * 65.15195 * 3 2 1 6 6 N 1.46929 * 108.76702 * 174.59711 * 5 3 2 7 7 C 1.34774 * 120.63143 * 126.41405 * 6 5 3 8 8 O 1.21283 * 120.00257 * 359.97195 * 7 6 5 9 9 C 1.50704 * 120.00135 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47531 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46994 * 64.99604 * 10 9 7 12 12 C 1.52994 * 109.47427 * 185.00035 * 10 9 7 13 13 C 1.46926 * 118.73935 * 306.38589 * 6 5 3 14 14 C 1.53190 * 108.77404 * 53.60800 * 13 6 5 15 15 C 1.53036 * 109.31618 * 305.36675 * 14 13 6 16 16 H 1.09007 * 109.46211 * 181.36516 * 15 14 13 17 17 N 1.46496 * 109.46261 * 301.34591 * 15 14 13 18 18 C 1.36945 * 119.99718 * 275.02605 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 H 1.09003 * 109.46842 * 60.00752 * 1 2 3 27 27 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47825 * 300.00260 * 1 2 3 29 29 H 1.08992 * 109.47516 * 239.99693 * 2 1 3 30 30 H 1.09003 * 109.46842 * 119.99248 * 2 1 3 31 31 H 1.08990 * 109.59458 * 54.80996 * 5 3 2 32 32 H 1.09005 * 109.70423 * 294.44525 * 5 3 2 33 33 H 1.09007 * 109.46707 * 299.99796 * 9 7 6 34 34 H 1.09004 * 109.46981 * 59.99421 * 9 7 6 35 35 H 1.09005 * 109.46850 * 305.00189 * 10 9 7 36 36 H 1.08997 * 109.47321 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47525 * 300.00325 * 11 10 9 38 38 H 1.08997 * 109.47423 * 60.00360 * 11 10 9 39 39 H 1.08996 * 109.47062 * 59.99456 * 12 10 9 40 40 H 1.08997 * 109.47153 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47231 * 299.99920 * 12 10 9 42 42 H 1.09001 * 109.58789 * 293.82762 * 13 6 5 43 43 H 1.08992 * 109.59131 * 173.39754 * 13 6 5 44 44 H 1.09006 * 109.49869 * 185.41218 * 14 13 6 45 45 H 1.09004 * 109.51931 * 65.33623 * 14 13 6 46 46 H 0.96996 * 120.00499 * 95.02336 * 17 15 14 47 47 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6381 2.1264 1.3103 6 7 2.2443 3.4641 1.3505 7 6 1.4847 4.5560 1.5679 8 8 0.2887 4.4398 1.7321 9 6 2.1215 5.9214 1.6069 10 6 1.0463 6.9784 1.8665 11 6 0.4515 6.7691 3.2606 12 6 1.6708 8.3725 1.7825 13 6 3.6944 3.5889 1.1499 14 6 4.0733 2.8883 -0.1586 15 6 3.5652 1.4451 -0.1256 16 1 3.8546 0.9371 -1.0456 17 7 4.1506 0.7477 1.0220 18 6 5.3882 0.1715 0.9146 19 1 5.9325 0.2310 -0.0163 20 6 5.9431 -0.4888 2.0021 21 7 5.2795 -0.5616 3.1365 22 14 7.6311 -1.2754 1.8553 23 1 7.9945 -1.9120 3.1467 24 1 7.6063 -2.3046 0.7852 25 1 8.6347 -0.2342 1.5176 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.9960 1.5375 2.1546 32 1 0.5528 2.2153 1.3606 33 1 2.8633 5.9535 2.4049 34 1 2.6062 6.1236 0.6518 35 1 0.2590 6.8872 1.1182 36 1 -0.3148 7.5219 3.4454 37 1 0.0065 5.7758 3.3205 38 1 1.2387 6.8602 4.0089 39 1 2.0945 8.5216 0.7894 40 1 0.9049 9.1255 1.9679 41 1 2.4581 8.4637 2.5309 42 1 4.2201 3.1192 1.9813 43 1 3.9660 4.6429 1.0920 44 1 5.1575 2.8899 -0.2716 45 1 3.6193 3.4148 -0.9983 46 1 3.6616 0.6941 1.8580 47 1 5.6672 -1.0234 3.8963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037765801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:29 Heat of formation + Delta-G solvation = -51.009599 kcal Electronic energy + Delta-G solvation = -23853.827132 eV Core-core repulsion = 20649.781075 eV Total energy + Delta-G solvation = -3204.046057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13016 -38.06638 -35.48560 -34.39360 -33.72663 -31.67958 -29.54408 -29.09817 -27.65047 -27.09952 -24.66328 -23.76113 -23.45343 -20.82118 -20.59994 -19.23265 -18.09805 -17.37266 -16.74871 -15.92625 -15.39612 -14.86672 -14.57642 -14.11930 -14.01703 -13.89053 -13.53525 -13.37065 -13.24693 -13.00166 -12.64828 -12.29331 -12.25356 -12.05514 -11.89898 -11.73431 -11.38571 -11.11204 -11.08416 -10.94857 -10.86085 -10.78344 -10.70240 -10.59462 -10.28537 -10.24682 -10.18783 -9.76904 -9.54467 -9.34452 -8.92062 -8.15492 -6.98183 -5.79732 -3.08202 2.92212 3.35426 3.40989 3.46355 3.47047 4.56607 4.69935 4.77109 4.90355 5.12253 5.24747 5.31058 5.36734 5.48117 5.50165 5.56691 5.58629 5.60777 5.62452 5.68762 5.71741 5.82372 5.85263 5.86922 5.93088 5.95487 6.08428 6.13419 6.17332 6.22071 6.34604 6.37689 6.40649 6.42637 6.48935 6.58386 6.66620 6.72472 6.79374 6.95927 7.04695 7.67142 7.80433 8.38823 8.49435 9.50387 10.07376 10.42521 11.42568 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.004809 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.494004 B = 5821.302982 C = 6709.235348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.603 5.603 7 C 0.512 3.488 8 O -0.553 6.553 9 C -0.136 4.136 10 C -0.080 4.080 11 C -0.153 4.153 12 C -0.147 4.147 13 C 0.113 3.887 14 C -0.150 4.150 15 C 0.178 3.822 16 H 0.050 0.950 17 N -0.718 5.718 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.292 1.292 24 H -0.287 1.287 25 H -0.287 1.287 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 12.262 -4.657 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.334 5.334 7 C 0.300 3.700 8 O -0.432 6.432 9 C -0.176 4.176 10 C -0.099 4.099 11 C -0.210 4.210 12 C -0.205 4.205 13 C -0.009 4.009 14 C -0.191 4.191 15 C 0.068 3.932 16 H 0.068 0.932 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.214 1.214 25 H -0.214 1.214 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.367 12.109 -4.593 14.899 hybrid contribution 1.110 -0.506 0.200 1.236 sum -6.257 11.603 -4.393 13.895 Atomic orbital electron populations 1.21850 0.96835 1.00990 1.01337 1.21415 0.94260 0.95812 1.03316 1.21732 0.97321 0.96086 0.97100 0.91695 1.21651 0.98749 0.81882 0.98118 1.48175 1.08692 1.06644 1.69936 1.20623 0.86924 0.86246 0.76188 1.90609 1.15067 1.86724 1.50811 1.21785 0.99646 0.92340 1.03823 1.20849 0.96919 0.93131 0.98962 1.21954 1.00335 1.03327 0.95388 1.21864 1.00734 0.96294 1.01582 1.21724 0.79302 1.00000 0.99894 1.22522 1.01731 0.99320 0.95532 1.20220 0.89781 0.90633 0.92577 0.93213 1.42467 1.19058 1.63962 1.10580 1.19174 0.93651 1.27100 0.97022 0.91340 1.24692 0.98515 1.01453 0.96010 1.69641 1.38163 1.48025 1.02243 0.86321 0.84380 0.79203 0.76565 1.21812 1.21379 1.21389 0.93416 0.93194 0.92791 0.92088 0.90521 0.90955 0.89679 0.89084 0.89212 0.90643 0.93262 0.90548 0.93444 0.92788 0.92606 0.92679 0.89795 0.91211 0.90811 0.93384 0.78086 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 3 C -0.10 -1.68 2.14 -90.51 -0.19 -1.87 16 4 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 5 C 0.12 2.01 5.03 -3.72 -0.02 2.00 16 6 N -0.60 -9.68 2.97 -172.79 -0.51 -10.19 16 7 C 0.51 8.00 7.42 -10.98 -0.08 7.91 16 8 O -0.55 -10.07 13.38 5.55 0.07 -9.99 16 9 C -0.14 -1.62 3.52 -27.88 -0.10 -1.72 16 10 C -0.08 -0.90 2.57 -90.63 -0.23 -1.13 16 11 C -0.15 -1.83 8.93 37.16 0.33 -1.50 16 12 C -0.15 -1.31 9.19 37.15 0.34 -0.96 16 13 C 0.11 1.76 6.08 -3.71 -0.02 1.74 16 14 C -0.15 -2.43 5.78 -26.61 -0.15 -2.58 16 15 C 0.18 3.29 2.53 -67.89 -0.17 3.11 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -16.33 3.72 -53.38 -0.20 -16.53 16 18 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 19 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 22 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.44 7.70 -51.93 -0.40 1.04 16 31 H 0.07 1.38 6.64 -51.93 -0.34 1.03 16 32 H 0.08 1.47 5.73 -51.93 -0.30 1.17 16 33 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 34 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 35 H 0.08 0.94 7.96 -51.93 -0.41 0.52 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.56 7.74 -51.93 -0.40 1.15 16 43 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.38 9.41 5.94 -40.82 -0.24 9.17 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -28.68 357.18 -8.37 -37.05 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.49 Total: 9.22 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.32 Total: -5.35 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.01 Total: -52.91 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.68 -8.37 -37.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.960 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds