Wall clock time and date at job start Tue Mar 31 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.08998 * 109.52253 * 305.07135 * 3 2 1 5 5 C 1.53163 * 109.48277 * 65.15195 * 3 2 1 6 6 N 1.46929 * 108.76702 * 174.59711 * 5 3 2 7 7 C 1.34774 * 120.63143 * 126.41405 * 6 5 3 8 8 O 1.21283 * 120.00257 * 359.97195 * 7 6 5 9 9 C 1.50704 * 120.00135 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47531 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46994 * 64.99604 * 10 9 7 12 12 C 1.52994 * 109.47427 * 185.00035 * 10 9 7 13 13 C 1.46926 * 118.73935 * 306.38589 * 6 5 3 14 14 C 1.53190 * 108.77404 * 53.60800 * 13 6 5 15 15 C 1.53036 * 109.31618 * 305.36675 * 14 13 6 16 16 H 1.09007 * 109.46211 * 181.36516 * 15 14 13 17 17 N 1.46496 * 109.46261 * 301.34591 * 15 14 13 18 18 C 1.36945 * 119.99718 * 275.02605 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 H 1.09003 * 109.46842 * 60.00752 * 1 2 3 27 27 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47825 * 300.00260 * 1 2 3 29 29 H 1.08992 * 109.47516 * 239.99693 * 2 1 3 30 30 H 1.09003 * 109.46842 * 119.99248 * 2 1 3 31 31 H 1.08990 * 109.59458 * 54.80996 * 5 3 2 32 32 H 1.09005 * 109.70423 * 294.44525 * 5 3 2 33 33 H 1.09007 * 109.46707 * 299.99796 * 9 7 6 34 34 H 1.09004 * 109.46981 * 59.99421 * 9 7 6 35 35 H 1.09005 * 109.46850 * 305.00189 * 10 9 7 36 36 H 1.08997 * 109.47321 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47525 * 300.00325 * 11 10 9 38 38 H 1.08997 * 109.47423 * 60.00360 * 11 10 9 39 39 H 1.08996 * 109.47062 * 59.99456 * 12 10 9 40 40 H 1.08997 * 109.47153 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47231 * 299.99920 * 12 10 9 42 42 H 1.09001 * 109.58789 * 293.82762 * 13 6 5 43 43 H 1.08992 * 109.59131 * 173.39754 * 13 6 5 44 44 H 1.09006 * 109.49869 * 185.41218 * 14 13 6 45 45 H 1.09004 * 109.51931 * 65.33623 * 14 13 6 46 46 H 0.96996 * 120.00499 * 95.02336 * 17 15 14 47 47 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6381 2.1264 1.3103 6 7 2.2443 3.4641 1.3505 7 6 1.4847 4.5560 1.5679 8 8 0.2887 4.4398 1.7321 9 6 2.1215 5.9214 1.6069 10 6 1.0463 6.9784 1.8665 11 6 0.4515 6.7691 3.2606 12 6 1.6708 8.3725 1.7825 13 6 3.6944 3.5889 1.1499 14 6 4.0733 2.8883 -0.1586 15 6 3.5652 1.4451 -0.1256 16 1 3.8546 0.9371 -1.0456 17 7 4.1506 0.7477 1.0220 18 6 5.3882 0.1715 0.9146 19 1 5.9325 0.2310 -0.0163 20 6 5.9431 -0.4888 2.0021 21 7 5.2795 -0.5616 3.1365 22 14 7.6311 -1.2754 1.8553 23 1 7.9945 -1.9120 3.1467 24 1 7.6063 -2.3046 0.7852 25 1 8.6347 -0.2342 1.5176 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.9960 1.5375 2.1546 32 1 0.5528 2.2153 1.3606 33 1 2.8633 5.9535 2.4049 34 1 2.6062 6.1236 0.6518 35 1 0.2590 6.8872 1.1182 36 1 -0.3148 7.5219 3.4454 37 1 0.0065 5.7758 3.3205 38 1 1.2387 6.8602 4.0089 39 1 2.0945 8.5216 0.7894 40 1 0.9049 9.1255 1.9679 41 1 2.4581 8.4637 2.5309 42 1 4.2201 3.1192 1.9813 43 1 3.9660 4.6429 1.0920 44 1 5.1575 2.8899 -0.2716 45 1 3.6193 3.4148 -0.9983 46 1 3.6616 0.6941 1.8580 47 1 5.6672 -1.0234 3.8963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037765801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:29 Heat of formation + Delta-G solvation = -66.275748 kcal Electronic energy + Delta-G solvation = -23854.489122 eV Core-core repulsion = 20649.781075 eV Total energy + Delta-G solvation = -3204.708047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42045 -39.41198 -36.47824 -35.83111 -35.32577 -33.37904 -30.99093 -30.51932 -28.84009 -27.92135 -26.14926 -25.28945 -25.01076 -22.15861 -21.63912 -20.45568 -19.51868 -19.19600 -18.04436 -17.12137 -16.68899 -16.42254 -16.01190 -15.66347 -15.43717 -14.94284 -14.82314 -14.72684 -14.53942 -14.27883 -14.08989 -13.66890 -13.24279 -13.08466 -12.97233 -12.89985 -12.80018 -12.73300 -12.60716 -12.35403 -12.21451 -12.14456 -11.91789 -11.81632 -11.67920 -11.56455 -11.52510 -11.43115 -11.10301 -10.83457 -10.56101 -9.52356 -8.90173 -7.87101 -5.13283 1.50702 1.51809 1.57667 1.70094 2.10574 2.61116 3.46578 3.57894 3.82063 3.88550 3.91261 4.05211 4.06227 4.11344 4.26697 4.38188 4.39178 4.45822 4.49898 4.62373 4.67108 4.72489 4.74111 4.77274 4.86935 4.88009 4.91163 5.01188 5.06374 5.07163 5.14889 5.17850 5.23535 5.26552 5.33013 5.33992 5.41353 5.48995 5.53033 5.54819 5.62019 5.71421 6.34419 6.55461 7.25139 7.42032 8.18781 8.42256 9.36025 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.004809 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.494004 B = 5821.302982 C = 6709.235348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.125 3.875 6 N -0.605 5.605 7 C 0.506 3.494 8 O -0.582 6.582 9 C -0.131 4.131 10 C -0.078 4.078 11 C -0.152 4.152 12 C -0.141 4.141 13 C 0.119 3.881 14 C -0.142 4.142 15 C 0.171 3.829 16 H 0.046 0.954 17 N -0.724 5.724 18 C -0.227 4.227 19 H 0.075 0.925 20 C -0.072 4.072 21 N -0.970 5.970 22 Si 0.963 3.037 23 H -0.303 1.303 24 H -0.283 1.283 25 H -0.278 1.278 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 14.345 -6.447 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.110 4.110 4 H 0.102 0.898 5 C 0.002 3.998 6 N -0.337 5.337 7 C 0.297 3.703 8 O -0.463 6.463 9 C -0.171 4.171 10 C -0.097 4.097 11 C -0.209 4.209 12 C -0.198 4.198 13 C -0.003 4.003 14 C -0.183 4.183 15 C 0.062 3.938 16 H 0.064 0.936 17 N -0.365 5.365 18 C -0.359 4.359 19 H 0.093 0.907 20 C -0.264 4.264 21 N -0.621 5.621 22 Si 0.794 3.206 23 H -0.230 1.230 24 H -0.209 1.209 25 H -0.205 1.205 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.206 0.794 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.980 14.224 -6.438 17.102 hybrid contribution 0.905 -1.133 0.715 1.617 sum -6.075 13.091 -5.723 15.525 Atomic orbital electron populations 1.21777 0.94799 1.01876 1.01799 1.21344 0.96037 0.95383 1.01651 1.21633 0.95884 0.96296 0.97226 0.89822 1.21439 0.98462 0.82529 0.97386 1.48245 1.08955 1.06365 1.70121 1.21365 0.86623 0.87310 0.75006 1.90604 1.16556 1.87260 1.51853 1.21869 0.99892 0.89708 1.05609 1.20843 0.96534 0.94544 0.97793 1.21926 1.00818 1.01749 0.96446 1.21810 1.00996 0.94437 1.02605 1.21673 0.78568 1.01867 0.98193 1.22394 1.01418 0.97588 0.96877 1.20462 0.90989 0.91697 0.90636 0.93621 1.42578 1.18261 1.64311 1.11383 1.19541 0.94348 1.25300 0.96738 0.90687 1.25370 1.01784 1.03197 0.96055 1.69805 1.39649 1.49799 1.02853 0.85359 0.80986 0.78436 0.75846 1.22959 1.20941 1.20468 0.91806 0.92187 0.93360 0.91964 0.93868 0.93929 0.89974 0.87829 0.86687 0.91998 0.92218 0.93714 0.92726 0.91552 0.91970 0.91942 0.93270 0.87411 0.91426 0.90503 0.79400 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.67 71.98 0.70 -3.19 16 2 C -0.11 -3.42 5.19 30.59 0.16 -3.26 16 3 C -0.09 -2.90 2.14 -10.72 -0.02 -2.92 16 4 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 5 C 0.12 4.30 5.03 86.35 0.43 4.73 16 6 N -0.61 -18.87 2.97 -818.97 -2.43 -21.31 16 7 C 0.51 15.16 7.42 87.66 0.65 15.81 16 8 O -0.58 -21.03 13.38 -3.04 -0.04 -21.07 16 9 C -0.13 -2.75 3.52 29.85 0.11 -2.64 16 10 C -0.08 -1.59 2.57 -10.80 -0.03 -1.61 16 11 C -0.15 -3.47 8.93 71.98 0.64 -2.83 16 12 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 13 C 0.12 3.52 6.08 86.36 0.53 4.04 16 14 C -0.14 -4.29 5.78 30.67 0.18 -4.11 16 15 C 0.17 6.16 2.53 45.02 0.11 6.27 16 16 H 0.05 1.69 8.08 -2.38 -0.02 1.68 16 17 N -0.72 -33.43 3.72 -322.81 -1.20 -34.63 16 18 C -0.23 -11.78 9.93 84.03 0.83 -10.95 16 19 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 21 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 22 Si 0.96 44.92 29.55 68.60 2.03 46.95 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.34 6.70 -2.39 -0.02 1.32 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.68 7.70 -2.39 -0.02 1.66 16 31 H 0.04 1.72 6.64 -2.39 -0.02 1.70 16 32 H 0.08 2.87 5.73 -2.38 -0.01 2.86 16 33 H 0.10 1.96 7.94 -2.38 -0.02 1.94 16 34 H 0.12 1.87 7.69 -2.39 -0.02 1.85 16 35 H 0.06 1.43 7.96 -2.38 -0.02 1.41 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.04 1.31 5.95 -2.38 -0.01 1.29 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.05 1.82 7.74 -2.39 -0.02 1.80 16 43 H 0.11 2.35 5.93 -2.39 -0.01 2.34 16 44 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.37 19.01 5.94 -92.71 -0.55 18.45 16 47 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -63.38 357.18 4.43 -58.96 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.38 Total: 34.08 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 5.42 Total: -5.52 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.35 Total: -113.40 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.04 Total: -21.07 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -63.38 4.43 -58.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.321 kcal (2) G-P(sol) polarization free energy of solvation -63.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds