Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46824 * 2 1 4 4 H 1.09000 * 109.49639 * 304.93278 * 3 2 1 5 5 C 1.53186 * 109.49894 * 65.00133 * 3 2 1 6 6 N 1.46920 * 108.77829 * 174.58402 * 5 3 2 7 7 C 1.34777 * 120.63268 * 126.36563 * 6 5 3 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46776 * 175.00090 * 10 9 7 12 12 C 1.53005 * 109.46867 * 294.99775 * 10 9 7 13 13 C 1.46927 * 118.74032 * 306.64801 * 6 5 3 14 14 C 1.52765 * 109.00862 * 53.30307 * 13 6 5 15 15 C 1.53035 * 109.38268 * 305.59133 * 14 13 6 16 16 H 1.09007 * 109.46249 * 301.21815 * 15 14 13 17 17 N 1.46502 * 109.46191 * 181.25904 * 15 14 13 18 18 C 1.36941 * 119.99804 * 84.92683 * 17 15 14 19 19 H 1.07994 * 119.99862 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99790 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99881 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99859 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46765 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46912 * 119.99968 * 22 20 18 25 25 H 1.48500 * 109.46920 * 239.99885 * 22 20 18 26 26 H 1.09003 * 109.47325 * 299.99634 * 1 2 3 27 27 H 1.08997 * 109.47181 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.46680 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47325 * 240.00366 * 2 1 3 30 30 H 1.08997 * 109.47181 * 119.99679 * 2 1 3 31 31 H 1.09006 * 109.58713 * 54.79544 * 5 3 2 32 32 H 1.08997 * 109.70725 * 294.44759 * 5 3 2 33 33 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 34 34 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 35 35 H 1.08990 * 109.47170 * 54.99987 * 10 9 7 36 36 H 1.09000 * 109.47312 * 60.00037 * 11 10 9 37 37 H 1.09004 * 109.46964 * 179.97438 * 11 10 9 38 38 H 1.08994 * 109.47359 * 299.99610 * 11 10 9 39 39 H 1.09001 * 109.47099 * 60.00379 * 12 10 9 40 40 H 1.09004 * 109.46908 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47443 * 300.00098 * 12 10 9 42 42 H 1.09000 * 109.59185 * 173.14463 * 13 6 5 43 43 H 1.09004 * 109.58365 * 293.56750 * 13 6 5 44 44 H 1.09003 * 109.56176 * 185.55325 * 14 13 6 45 45 H 1.08994 * 109.38177 * 65.52180 * 14 13 6 46 46 H 0.97002 * 120.00025 * 264.94024 * 17 15 14 47 47 H 0.97002 * 119.99728 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6350 2.1280 1.3087 6 7 2.2414 3.4656 1.3493 7 6 1.4814 4.5580 1.5628 8 8 0.2850 4.4422 1.7241 9 6 2.1182 5.9233 1.6011 10 6 1.0425 6.9807 1.8574 11 6 1.7031 8.3511 2.0203 12 6 0.0732 7.0193 0.6742 13 6 3.6912 3.5905 1.1466 14 6 4.0740 2.8881 -0.1549 15 6 3.5655 1.4450 -0.1217 16 1 3.9989 0.9268 0.7338 17 7 3.9577 0.7608 -1.3564 18 6 5.1962 0.1851 -1.4563 19 1 5.8835 0.2351 -0.6249 20 6 5.5679 -0.4628 -2.6264 21 7 4.7303 -0.5232 -3.6398 22 14 7.2571 -1.2487 -2.7625 23 1 8.0027 -1.0420 -1.4951 24 1 7.1068 -2.7039 -3.0174 25 1 8.0046 -0.6245 -3.8835 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9907 1.5397 2.1547 32 1 0.5497 2.2172 1.3565 33 1 2.6054 6.1239 0.6469 34 1 2.8580 5.9568 2.4009 35 1 0.4962 6.7303 2.7666 36 1 2.2495 8.6016 1.1109 37 1 0.9368 9.1046 2.2024 38 1 2.3937 8.3237 2.8631 39 1 -0.3974 6.0430 0.5581 40 1 -0.6929 7.7729 0.8565 41 1 0.6195 7.2697 -0.2352 42 1 3.9622 4.6445 1.0847 43 1 4.2181 3.1239 1.9790 44 1 5.1584 2.8893 -0.2651 45 1 3.6222 3.4138 -0.9961 46 1 3.3402 0.7158 -2.1031 47 1 4.9900 -0.9762 -4.4573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037765803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = -53.255316 kcal Electronic energy + Delta-G solvation = -23510.579629 eV Core-core repulsion = 20306.436191 eV Total energy + Delta-G solvation = -3204.143439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24347 -38.04837 -35.59945 -34.71044 -33.77378 -31.72834 -29.57997 -29.41688 -27.67072 -27.16691 -24.82318 -23.82039 -22.76486 -20.87224 -20.66646 -19.62094 -18.74730 -17.14704 -16.95712 -16.01940 -15.57273 -14.96482 -14.60369 -14.20814 -14.10706 -13.79380 -13.66299 -13.30810 -13.21503 -13.07594 -12.73513 -12.49656 -12.32816 -12.02532 -11.95392 -11.81378 -11.59790 -11.30005 -11.13208 -10.95484 -10.94043 -10.85056 -10.77418 -10.65565 -10.33106 -10.19478 -10.13713 -9.74825 -9.59547 -9.51203 -8.91801 -8.41507 -6.97998 -5.79538 -3.08187 2.75338 3.15534 3.40481 3.46258 3.48526 4.54255 4.56514 4.67335 4.80957 5.02194 5.13177 5.23801 5.30175 5.35961 5.40041 5.44490 5.50368 5.52193 5.58387 5.60716 5.61476 5.70012 5.71015 5.80329 5.86744 5.90439 6.01664 6.04226 6.13917 6.16473 6.26566 6.32166 6.36287 6.38954 6.42604 6.46889 6.59081 6.69421 6.83204 6.96317 7.05681 7.58314 7.67338 8.32101 8.38683 9.50264 10.07837 10.42730 11.42966 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.004136 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.796610 B = 6768.543074 C = 7577.694138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.608 5.608 7 C 0.513 3.487 8 O -0.548 6.548 9 C -0.137 4.137 10 C -0.080 4.080 11 C -0.148 4.148 12 C -0.153 4.153 13 C 0.107 3.893 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 12.398 11.442 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.340 5.340 7 C 0.302 3.698 8 O -0.426 6.426 9 C -0.177 4.177 10 C -0.099 4.099 11 C -0.205 4.205 12 C -0.211 4.211 13 C -0.017 4.017 14 C -0.194 4.194 15 C 0.073 3.927 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.193 12.245 11.545 17.933 hybrid contribution 1.015 -0.468 -0.533 1.238 sum -5.178 11.778 11.012 16.935 Atomic orbital electron populations 1.21840 0.96820 1.01005 1.01293 1.21452 0.94372 0.95754 1.03417 1.21771 0.97573 0.96230 0.96804 0.91293 1.21719 0.99404 0.81658 0.97626 1.48219 1.08534 1.06834 1.70461 1.20663 0.86942 0.86213 0.75960 1.90624 1.14912 1.86597 1.50478 1.21804 0.99611 0.92215 1.04054 1.20858 0.95505 0.93420 1.00119 1.21866 1.00540 0.96482 1.01618 1.21959 0.98910 1.03260 0.96927 1.21776 0.79569 1.01145 0.99163 1.22606 1.02172 0.99325 0.95266 1.20182 0.90807 0.90510 0.91185 0.93478 1.42424 1.16483 1.64429 1.12742 1.19260 0.91788 1.27260 0.98586 0.91194 1.24724 0.98128 1.01555 0.96431 1.69670 1.35216 1.48375 1.04710 0.86163 0.84040 0.78917 0.77336 1.20597 1.21921 1.21950 0.93229 0.93012 0.93192 0.89831 0.92495 0.91907 0.89218 0.88903 0.89169 0.90606 0.92627 0.92534 0.92774 0.90591 0.93168 0.93379 0.90469 0.91592 0.90574 0.92242 0.78212 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.70 1.93 -90.50 -0.17 -1.88 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.74 5.32 -3.72 -0.02 1.72 16 6 N -0.61 -8.44 2.98 -173.03 -0.52 -8.95 16 7 C 0.51 7.18 7.42 -10.98 -0.08 7.09 16 8 O -0.55 -9.20 13.38 5.56 0.07 -9.12 16 9 C -0.14 -1.43 3.52 -27.88 -0.10 -1.53 16 10 C -0.08 -0.82 2.57 -90.62 -0.23 -1.05 16 11 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 12 C -0.15 -1.72 8.93 37.16 0.33 -1.38 16 13 C 0.11 1.35 6.31 -3.93 -0.02 1.32 16 14 C -0.15 -2.48 5.64 -26.83 -0.15 -2.63 16 15 C 0.18 3.41 2.19 -67.89 -0.15 3.26 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -17.04 4.33 -53.38 -0.23 -17.28 16 18 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 22 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.38 5.73 -51.93 -0.30 1.08 16 33 H 0.09 0.91 7.68 -51.93 -0.40 0.51 16 34 H 0.09 0.78 7.95 -51.93 -0.41 0.37 16 35 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.38 9.86 7.51 -40.82 -0.31 9.55 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -29.74 360.75 -8.45 -38.19 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.63 Total: 8.15 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.29 Total: -6.54 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.02 Total: -52.94 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.74 -8.45 -38.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.063 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds