Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46824 * 2 1 4 4 H 1.09000 * 109.49639 * 304.93278 * 3 2 1 5 5 C 1.53186 * 109.49894 * 65.00133 * 3 2 1 6 6 N 1.46920 * 108.77829 * 174.58402 * 5 3 2 7 7 C 1.34777 * 120.63268 * 126.36563 * 6 5 3 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46776 * 175.00090 * 10 9 7 12 12 C 1.53005 * 109.46867 * 294.99775 * 10 9 7 13 13 C 1.46927 * 118.74032 * 306.64801 * 6 5 3 14 14 C 1.52765 * 109.00862 * 53.30307 * 13 6 5 15 15 C 1.53035 * 109.38268 * 305.59133 * 14 13 6 16 16 H 1.09007 * 109.46249 * 301.21815 * 15 14 13 17 17 N 1.46502 * 109.46191 * 181.25904 * 15 14 13 18 18 C 1.36941 * 119.99804 * 84.92683 * 17 15 14 19 19 H 1.07994 * 119.99862 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99790 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99881 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99859 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46765 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46912 * 119.99968 * 22 20 18 25 25 H 1.48500 * 109.46920 * 239.99885 * 22 20 18 26 26 H 1.09003 * 109.47325 * 299.99634 * 1 2 3 27 27 H 1.08997 * 109.47181 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.46680 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47325 * 240.00366 * 2 1 3 30 30 H 1.08997 * 109.47181 * 119.99679 * 2 1 3 31 31 H 1.09006 * 109.58713 * 54.79544 * 5 3 2 32 32 H 1.08997 * 109.70725 * 294.44759 * 5 3 2 33 33 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 34 34 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 35 35 H 1.08990 * 109.47170 * 54.99987 * 10 9 7 36 36 H 1.09000 * 109.47312 * 60.00037 * 11 10 9 37 37 H 1.09004 * 109.46964 * 179.97438 * 11 10 9 38 38 H 1.08994 * 109.47359 * 299.99610 * 11 10 9 39 39 H 1.09001 * 109.47099 * 60.00379 * 12 10 9 40 40 H 1.09004 * 109.46908 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47443 * 300.00098 * 12 10 9 42 42 H 1.09000 * 109.59185 * 173.14463 * 13 6 5 43 43 H 1.09004 * 109.58365 * 293.56750 * 13 6 5 44 44 H 1.09003 * 109.56176 * 185.55325 * 14 13 6 45 45 H 1.08994 * 109.38177 * 65.52180 * 14 13 6 46 46 H 0.97002 * 120.00025 * 264.94024 * 17 15 14 47 47 H 0.97002 * 119.99728 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6350 2.1280 1.3087 6 7 2.2414 3.4656 1.3493 7 6 1.4814 4.5580 1.5628 8 8 0.2850 4.4422 1.7241 9 6 2.1182 5.9233 1.6011 10 6 1.0425 6.9807 1.8574 11 6 1.7031 8.3511 2.0203 12 6 0.0732 7.0193 0.6742 13 6 3.6912 3.5905 1.1466 14 6 4.0740 2.8881 -0.1549 15 6 3.5655 1.4450 -0.1217 16 1 3.9989 0.9268 0.7338 17 7 3.9577 0.7608 -1.3564 18 6 5.1962 0.1851 -1.4563 19 1 5.8835 0.2351 -0.6249 20 6 5.5679 -0.4628 -2.6264 21 7 4.7303 -0.5232 -3.6398 22 14 7.2571 -1.2487 -2.7625 23 1 8.0027 -1.0420 -1.4951 24 1 7.1068 -2.7039 -3.0174 25 1 8.0046 -0.6245 -3.8835 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9907 1.5397 2.1547 32 1 0.5497 2.2172 1.3565 33 1 2.6054 6.1239 0.6469 34 1 2.8580 5.9568 2.4009 35 1 0.4962 6.7303 2.7666 36 1 2.2495 8.6016 1.1109 37 1 0.9368 9.1046 2.2024 38 1 2.3937 8.3237 2.8631 39 1 -0.3974 6.0430 0.5581 40 1 -0.6929 7.7729 0.8565 41 1 0.6195 7.2697 -0.2352 42 1 3.9622 4.6445 1.0847 43 1 4.2181 3.1239 1.9790 44 1 5.1584 2.8893 -0.2651 45 1 3.6222 3.4138 -0.9961 46 1 3.3402 0.7158 -2.1031 47 1 4.9900 -0.9762 -4.4573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037765803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = -69.883453 kcal Electronic energy + Delta-G solvation = -23511.300680 eV Core-core repulsion = 20306.436191 eV Total energy + Delta-G solvation = -3204.864489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38562 -39.33302 -36.53845 -36.09507 -35.30960 -33.43923 -31.06986 -30.64532 -28.79413 -27.92291 -26.41365 -25.09741 -24.33132 -22.22154 -21.68165 -20.90111 -19.85478 -19.03064 -18.10417 -17.08514 -16.76178 -16.60186 -15.69796 -15.59500 -15.50584 -15.10316 -14.85350 -14.72472 -14.43429 -14.31508 -13.96831 -13.71818 -13.26286 -13.12390 -13.03611 -12.93895 -12.86114 -12.72505 -12.64940 -12.52686 -12.14254 -12.06175 -11.94583 -11.83674 -11.69469 -11.58016 -11.52055 -11.50138 -11.08429 -10.87601 -10.58611 -9.59365 -8.95027 -7.90361 -5.17834 1.48987 1.49481 1.58930 1.68610 2.08404 2.58649 3.43134 3.56967 3.78155 3.82498 3.91320 4.02825 4.04927 4.09958 4.26474 4.35353 4.36550 4.45645 4.47138 4.64552 4.69052 4.72817 4.75925 4.78661 4.82011 4.86282 4.87618 4.92328 5.01039 5.06810 5.07911 5.13850 5.17127 5.28428 5.33244 5.39005 5.46901 5.49928 5.53613 5.54312 5.59757 5.69758 6.31096 6.50196 7.24227 7.37644 8.13851 8.37060 9.33455 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.004136 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.796610 B = 6768.543074 C = 7577.694138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.049 0.951 5 C 0.125 3.875 6 N -0.611 5.611 7 C 0.508 3.492 8 O -0.580 6.580 9 C -0.133 4.133 10 C -0.079 4.079 11 C -0.142 4.142 12 C -0.153 4.153 13 C 0.114 3.886 14 C -0.144 4.144 15 C 0.178 3.822 16 H 0.047 0.953 17 N -0.732 5.732 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.299 1.299 25 H -0.297 1.297 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 14.002 13.587 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.343 5.343 7 C 0.298 3.702 8 O -0.461 6.461 9 C -0.172 4.172 10 C -0.098 4.098 11 C -0.199 4.199 12 C -0.210 4.210 13 C -0.008 4.008 14 C -0.185 4.185 15 C 0.070 3.930 16 H 0.065 0.935 17 N -0.371 5.371 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.268 4.268 21 N -0.623 5.623 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.226 1.226 25 H -0.225 1.225 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.201 0.799 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.102 13.883 13.748 20.193 hybrid contribution 0.605 -0.947 -1.156 1.612 sum -4.497 12.936 12.592 18.604 Atomic orbital electron populations 1.21770 0.94970 1.01867 1.01612 1.21360 0.95998 0.95356 1.01861 1.21614 0.95888 0.96323 0.97353 0.93287 1.21564 0.99189 0.82422 0.96598 1.48311 1.09110 1.06510 1.70376 1.21353 0.86595 0.87297 0.74934 1.90619 1.16494 1.87129 1.51828 1.21883 0.99977 0.89641 1.05714 1.20851 0.95305 0.94843 0.98828 1.21815 1.00780 0.94812 1.02509 1.21932 0.99465 1.01695 0.97900 1.21819 0.78780 1.02898 0.97319 1.22401 1.01346 0.97571 0.97132 1.20426 0.92247 0.91479 0.88881 0.93525 1.42608 1.15502 1.65020 1.13931 1.19639 0.92538 1.25563 0.98295 0.90375 1.25474 1.01549 1.03258 0.96561 1.69830 1.37091 1.50173 1.05174 0.85160 0.80270 0.77305 0.77582 1.18777 1.22626 1.22492 0.91828 0.93712 0.92095 0.93540 0.91740 0.90476 0.89859 0.87662 0.86383 0.91963 0.91974 0.92160 0.91438 0.93629 0.92401 0.92808 0.87127 0.89760 0.91339 0.93742 0.79875 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.67 71.98 0.70 -3.34 16 2 C -0.11 -3.54 5.31 30.60 0.16 -3.38 16 3 C -0.09 -3.01 1.93 -10.72 -0.02 -3.03 16 4 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.13 3.51 5.32 86.36 0.46 3.97 16 6 N -0.61 -15.62 2.98 -819.74 -2.44 -18.06 16 7 C 0.51 13.21 7.42 87.66 0.65 13.86 16 8 O -0.58 -19.10 13.38 -3.02 -0.04 -19.14 16 9 C -0.13 -2.35 3.52 29.85 0.11 -2.24 16 10 C -0.08 -1.45 2.57 -10.79 -0.03 -1.47 16 11 C -0.14 -1.81 9.19 71.98 0.66 -1.14 16 12 C -0.15 -3.25 8.93 71.98 0.64 -2.61 16 13 C 0.11 2.52 6.31 86.22 0.54 3.06 16 14 C -0.14 -4.47 5.64 30.53 0.17 -4.30 16 15 C 0.18 6.55 2.19 45.02 0.10 6.65 16 16 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 17 N -0.73 -35.26 4.33 -322.81 -1.40 -36.66 16 18 C -0.23 -12.11 9.93 84.03 0.83 -11.28 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 21 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 22 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 26 H 0.06 1.59 6.70 -2.39 -0.02 1.58 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.88 7.22 -2.39 -0.02 1.86 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.08 2.48 5.73 -2.39 -0.01 2.47 16 33 H 0.11 1.66 7.68 -2.39 -0.02 1.64 16 34 H 0.12 1.48 7.95 -2.39 -0.02 1.46 16 35 H 0.06 1.31 7.95 -2.39 -0.02 1.29 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.04 1.25 5.95 -2.39 -0.01 1.24 16 40 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.11 1.76 5.93 -2.39 -0.01 1.75 16 43 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.37 19.76 7.51 -92.71 -0.70 19.07 16 47 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -65.96 360.75 4.10 -61.86 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.23 Total: 32.38 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.45 Total: -9.08 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -3.56 Total: -113.32 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.04 Total: -19.14 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.96 4.10 -61.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037765803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.022 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds