Wall clock time and date at job start Tue Mar 31 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 H 1.08999 * 109.52297 * 55.08376 * 3 2 1 5 5 C 1.53184 * 109.49975 * 295.00116 * 3 2 1 6 6 N 1.46929 * 108.77923 * 185.41696 * 5 3 2 7 7 C 1.34775 * 120.63042 * 233.58912 * 6 5 3 8 8 O 1.21288 * 119.99823 * 354.93328 * 7 6 5 9 9 C 1.50698 * 120.00158 * 174.93932 * 7 6 5 10 10 C 1.53000 * 109.47059 * 182.05060 * 9 7 6 11 11 C 1.53003 * 109.47176 * 62.04715 * 9 7 6 12 12 C 1.52999 * 109.46886 * 302.04795 * 9 7 6 13 13 C 1.46925 * 118.74030 * 53.85419 * 6 5 3 14 14 C 1.53629 * 108.54223 * 306.10240 * 13 6 5 15 15 C 1.53035 * 109.24399 * 54.85541 * 14 13 6 16 16 H 1.09004 * 109.45167 * 178.50030 * 15 14 13 17 17 N 1.46492 * 109.46162 * 58.52987 * 15 14 13 18 18 C 1.36939 * 120.00178 * 84.93510 * 17 15 14 19 19 H 1.08002 * 119.99816 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00135 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00171 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47417 * 90.00175 * 22 20 18 24 24 H 1.48507 * 109.47147 * 210.00113 * 22 20 18 25 25 H 1.48499 * 109.47416 * 330.00115 * 22 20 18 26 26 H 1.08995 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46823 * 300.00473 * 1 2 3 28 28 H 1.09003 * 109.47030 * 59.99600 * 1 2 3 29 29 H 1.08998 * 109.47173 * 239.99943 * 2 1 3 30 30 H 1.09003 * 109.47030 * 120.00400 * 2 1 3 31 31 H 1.09005 * 109.59111 * 65.62473 * 5 3 2 32 32 H 1.09003 * 109.70461 * 305.26882 * 5 3 2 33 33 H 1.09003 * 109.47094 * 299.99581 * 10 9 7 34 34 H 1.09001 * 109.46958 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47588 * 59.99760 * 10 9 7 36 36 H 1.09000 * 109.46985 * 190.00760 * 11 9 7 37 37 H 1.08997 * 109.46819 * 310.00163 * 11 9 7 38 38 H 1.08997 * 109.46760 * 70.00605 * 11 9 7 39 39 H 1.09000 * 109.47303 * 289.71867 * 12 9 7 40 40 H 1.08999 * 109.47270 * 49.71808 * 12 9 7 41 41 H 1.08997 * 109.47008 * 169.71780 * 12 9 7 42 42 H 1.09000 * 109.58524 * 65.92698 * 13 6 5 43 43 H 1.08996 * 109.59195 * 186.35837 * 13 6 5 44 44 H 1.09001 * 109.63215 * 294.85967 * 14 13 6 45 45 H 1.09000 * 109.45781 * 174.73986 * 14 13 6 46 46 H 0.97000 * 119.99971 * 264.92671 * 17 15 14 47 47 H 0.96995 * 120.00234 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9819 0.8424 5 6 1.6351 2.1280 -1.3087 6 7 2.2417 3.4656 -1.3493 7 6 1.4818 4.5579 -1.5636 8 8 0.3019 4.4358 -1.8164 9 6 2.0983 5.9311 -1.4894 10 6 1.0169 6.9887 -1.7196 11 6 3.1787 6.0639 -2.5646 12 6 2.7250 6.1347 -0.1086 13 6 3.6931 3.5893 -1.1577 14 6 4.0742 2.8878 0.1549 15 6 3.5657 1.4448 0.1217 16 1 3.8574 0.9359 1.0404 17 7 4.1480 0.7484 -1.0280 18 6 5.3861 0.1725 -0.9245 19 1 5.9334 0.2321 0.0046 20 6 5.9381 -0.4869 -2.0141 21 7 7.1283 -1.0400 -1.9148 22 14 4.9919 -0.5893 -3.6214 23 1 5.3324 0.5796 -4.4717 24 1 5.3570 -1.8413 -4.3319 25 1 3.5341 -0.5878 -3.3387 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5497 2.2174 -1.3538 32 1 1.9889 1.5406 -2.1560 33 1 0.5704 6.8436 -2.7034 34 1 1.4629 7.9819 -1.6664 35 1 0.2472 6.8941 -0.9537 36 1 3.7438 6.9814 -2.4004 37 1 3.8518 5.2082 -2.5108 38 1 2.7103 6.0967 -3.5482 39 1 1.9366 6.2224 0.6389 40 1 3.3601 5.2820 0.1315 41 1 3.3248 7.0448 -0.1125 42 1 4.2132 3.1177 -1.9915 43 1 3.9661 4.6431 -1.1031 44 1 3.6221 3.4137 0.9958 45 1 5.1585 2.8890 0.2656 46 1 3.6566 0.6952 -1.8626 47 1 7.5140 -1.5011 -2.6760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037955584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:36 Heat of formation + Delta-G solvation = -24.285339 kcal Electronic energy + Delta-G solvation = -24658.058517 eV Core-core repulsion = 21455.171310 eV Total energy + Delta-G solvation = -3202.887206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71283 -38.19225 -35.93351 -34.33576 -33.81548 -31.76565 -29.90058 -28.95555 -27.46859 -27.15644 -25.61789 -23.90837 -23.23028 -21.91299 -20.82284 -19.16169 -18.24780 -17.79543 -16.51693 -15.99343 -15.25190 -15.03447 -14.61395 -14.38173 -14.23397 -13.73691 -13.67911 -13.40391 -13.31642 -12.87636 -12.57617 -12.47307 -12.40617 -12.21796 -12.00601 -11.78221 -11.74086 -11.53135 -11.26822 -11.23680 -11.04139 -10.95755 -10.88756 -10.57870 -10.35810 -10.23814 -10.18007 -9.83578 -9.57766 -9.37019 -8.95868 -8.31830 -7.30304 -5.81375 -3.16444 2.78979 3.20250 3.32136 3.35344 3.41913 4.43505 4.54209 4.69445 4.80267 4.96250 5.09513 5.16519 5.20487 5.30760 5.39369 5.44457 5.49558 5.51620 5.54880 5.60089 5.64473 5.66947 5.71316 5.76018 5.77816 5.85948 5.88912 6.00005 6.02605 6.08331 6.13040 6.18060 6.23321 6.27116 6.31390 6.45417 6.53238 6.57787 6.66427 6.75845 6.90748 7.65539 7.95164 8.35328 8.37909 9.16225 9.88984 10.08954 11.37073 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.006345 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.204500 B = 4411.919955 C = 5085.924634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.117 3.883 6 N -0.602 5.602 7 C 0.522 3.478 8 O -0.553 6.553 9 C -0.085 4.085 10 C -0.124 4.124 11 C -0.160 4.160 12 C -0.159 4.159 13 C 0.090 3.910 14 C -0.151 4.151 15 C 0.185 3.815 16 H 0.059 0.941 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 13.052 3.302 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.089 0.911 5 C -0.005 4.005 6 N -0.334 5.334 7 C 0.310 3.690 8 O -0.431 6.431 9 C -0.088 4.088 10 C -0.181 4.181 11 C -0.217 4.217 12 C -0.216 4.216 13 C -0.032 4.032 14 C -0.192 4.192 15 C 0.075 3.925 16 H 0.077 0.923 17 N -0.387 5.387 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.581 5.581 22 Si 0.707 3.293 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.366 12.874 3.240 16.843 hybrid contribution -0.417 -0.237 -1.279 1.365 sum -10.783 12.638 1.962 16.728 Atomic orbital electron populations 1.21856 0.96655 1.01153 1.01448 1.21435 0.94469 0.95748 1.03291 1.21791 0.97422 0.96153 0.97204 0.91065 1.21657 0.98999 0.82026 0.97857 1.48098 1.08569 1.06374 1.70309 1.20547 0.86331 0.86098 0.75975 1.90639 1.16364 1.86930 1.49196 1.20733 0.97357 0.92958 0.97784 1.21638 0.97212 0.96527 1.02750 1.22280 0.98029 1.03517 0.97843 1.22273 1.01363 1.03428 0.94504 1.22445 0.79263 1.01747 0.99705 1.22622 1.02258 0.98828 0.95521 1.20178 0.89428 0.90726 0.92158 0.92261 1.42841 1.19568 1.65814 1.10472 1.19052 0.91820 1.26900 0.99197 0.89166 1.24620 0.96424 1.00302 0.97485 1.69685 1.16292 1.41315 1.30801 0.86683 0.79664 0.77462 0.85458 1.21182 1.21739 1.20409 0.93054 0.93147 0.92883 0.91116 0.91549 0.89447 0.91813 0.92115 0.92267 0.92180 0.91391 0.90365 0.92122 0.92202 0.90075 0.91527 0.90361 0.88326 0.92791 0.90239 0.80597 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.68 5.19 -26.73 -0.14 -1.82 16 3 C -0.11 -1.62 2.14 -90.50 -0.19 -1.81 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.12 1.88 5.00 -3.71 -0.02 1.86 16 6 N -0.60 -9.20 2.96 -172.50 -0.51 -9.71 16 7 C 0.52 8.04 6.48 -10.99 -0.07 7.97 16 8 O -0.55 -10.20 15.42 5.55 0.09 -10.11 16 9 C -0.09 -1.01 0.75 -155.66 -0.12 -1.12 16 10 C -0.12 -1.36 7.73 37.16 0.29 -1.08 16 11 C -0.16 -1.70 8.10 37.16 0.30 -1.40 16 12 C -0.16 -1.60 8.09 37.16 0.30 -1.30 16 13 C 0.09 1.31 3.71 -3.48 -0.01 1.30 16 14 C -0.15 -2.30 5.45 -26.39 -0.14 -2.45 16 15 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 16 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 17 N -0.74 -15.93 3.52 -53.39 -0.19 -16.12 16 18 C -0.24 -6.27 10.41 -15.06 -0.16 -6.43 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 22 Si 0.88 21.49 27.73 -169.99 -4.71 16.78 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.69 6.70 -51.93 -0.35 0.35 16 29 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.43 5.76 -51.93 -0.30 1.13 16 32 H 0.06 1.12 6.65 -51.93 -0.35 0.78 16 33 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.07 0.58 8.02 -51.93 -0.42 0.17 16 37 H 0.08 0.89 4.75 -51.93 -0.25 0.65 16 38 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 40 H 0.08 0.86 3.86 -51.93 -0.20 0.66 16 41 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 42 H 0.08 1.33 7.73 -51.93 -0.40 0.92 16 43 H 0.10 1.20 2.83 -51.93 -0.15 1.05 16 44 H 0.05 0.72 7.44 -51.93 -0.39 0.33 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.36 7.85 3.81 -40.82 -0.16 7.69 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -30.38 344.06 -7.23 -37.61 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.99 Total: 8.64 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 0.13 Total: -4.73 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.08 Total: -53.38 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.38 -7.23 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.324 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds