Wall clock time and date at job start Tue Mar 31 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 H 1.08999 * 109.52297 * 55.08376 * 3 2 1 5 5 C 1.53184 * 109.49975 * 295.00116 * 3 2 1 6 6 N 1.46929 * 108.77923 * 185.41696 * 5 3 2 7 7 C 1.34775 * 120.63042 * 233.58912 * 6 5 3 8 8 O 1.21288 * 119.99823 * 354.93328 * 7 6 5 9 9 C 1.50698 * 120.00158 * 174.93932 * 7 6 5 10 10 C 1.53000 * 109.47059 * 182.05060 * 9 7 6 11 11 C 1.53003 * 109.47176 * 62.04715 * 9 7 6 12 12 C 1.52999 * 109.46886 * 302.04795 * 9 7 6 13 13 C 1.46925 * 118.74030 * 53.85419 * 6 5 3 14 14 C 1.53629 * 108.54223 * 306.10240 * 13 6 5 15 15 C 1.53035 * 109.24399 * 54.85541 * 14 13 6 16 16 H 1.09004 * 109.45167 * 178.50030 * 15 14 13 17 17 N 1.46492 * 109.46162 * 58.52987 * 15 14 13 18 18 C 1.36939 * 120.00178 * 84.93510 * 17 15 14 19 19 H 1.08002 * 119.99816 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00135 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00171 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47417 * 90.00175 * 22 20 18 24 24 H 1.48507 * 109.47147 * 210.00113 * 22 20 18 25 25 H 1.48499 * 109.47416 * 330.00115 * 22 20 18 26 26 H 1.08995 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46823 * 300.00473 * 1 2 3 28 28 H 1.09003 * 109.47030 * 59.99600 * 1 2 3 29 29 H 1.08998 * 109.47173 * 239.99943 * 2 1 3 30 30 H 1.09003 * 109.47030 * 120.00400 * 2 1 3 31 31 H 1.09005 * 109.59111 * 65.62473 * 5 3 2 32 32 H 1.09003 * 109.70461 * 305.26882 * 5 3 2 33 33 H 1.09003 * 109.47094 * 299.99581 * 10 9 7 34 34 H 1.09001 * 109.46958 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47588 * 59.99760 * 10 9 7 36 36 H 1.09000 * 109.46985 * 190.00760 * 11 9 7 37 37 H 1.08997 * 109.46819 * 310.00163 * 11 9 7 38 38 H 1.08997 * 109.46760 * 70.00605 * 11 9 7 39 39 H 1.09000 * 109.47303 * 289.71867 * 12 9 7 40 40 H 1.08999 * 109.47270 * 49.71808 * 12 9 7 41 41 H 1.08997 * 109.47008 * 169.71780 * 12 9 7 42 42 H 1.09000 * 109.58524 * 65.92698 * 13 6 5 43 43 H 1.08996 * 109.59195 * 186.35837 * 13 6 5 44 44 H 1.09001 * 109.63215 * 294.85967 * 14 13 6 45 45 H 1.09000 * 109.45781 * 174.73986 * 14 13 6 46 46 H 0.97000 * 119.99971 * 264.92671 * 17 15 14 47 47 H 0.96995 * 120.00234 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9819 0.8424 5 6 1.6351 2.1280 -1.3087 6 7 2.2417 3.4656 -1.3493 7 6 1.4818 4.5579 -1.5636 8 8 0.3019 4.4358 -1.8164 9 6 2.0983 5.9311 -1.4894 10 6 1.0169 6.9887 -1.7196 11 6 3.1787 6.0639 -2.5646 12 6 2.7250 6.1347 -0.1086 13 6 3.6931 3.5893 -1.1577 14 6 4.0742 2.8878 0.1549 15 6 3.5657 1.4448 0.1217 16 1 3.8574 0.9359 1.0404 17 7 4.1480 0.7484 -1.0280 18 6 5.3861 0.1725 -0.9245 19 1 5.9334 0.2321 0.0046 20 6 5.9381 -0.4869 -2.0141 21 7 7.1283 -1.0400 -1.9148 22 14 4.9919 -0.5893 -3.6214 23 1 5.3324 0.5796 -4.4717 24 1 5.3570 -1.8413 -4.3319 25 1 3.5341 -0.5878 -3.3387 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5497 2.2174 -1.3538 32 1 1.9889 1.5406 -2.1560 33 1 0.5704 6.8436 -2.7034 34 1 1.4629 7.9819 -1.6664 35 1 0.2472 6.8941 -0.9537 36 1 3.7438 6.9814 -2.4004 37 1 3.8518 5.2082 -2.5108 38 1 2.7103 6.0967 -3.5482 39 1 1.9366 6.2224 0.6389 40 1 3.3601 5.2820 0.1315 41 1 3.3248 7.0448 -0.1125 42 1 4.2132 3.1177 -1.9915 43 1 3.9661 4.6431 -1.1031 44 1 3.6221 3.4137 0.9958 45 1 5.1585 2.8890 0.2656 46 1 3.6566 0.6952 -1.8626 47 1 7.5140 -1.5011 -2.6760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037955584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:35 Heat of formation + Delta-G solvation = -42.226417 kcal Electronic energy + Delta-G solvation = -24658.836500 eV Core-core repulsion = 21455.171310 eV Total energy + Delta-G solvation = -3203.665190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90894 -39.52005 -37.02778 -35.84646 -35.19122 -33.56011 -31.48880 -30.24547 -28.27720 -28.03202 -26.96137 -25.23301 -24.99024 -23.06818 -22.08251 -20.40884 -19.92326 -19.39631 -17.69819 -17.12525 -16.73926 -16.38678 -15.99811 -15.85594 -15.48631 -15.06269 -14.89156 -14.70103 -14.56761 -14.28022 -14.09700 -13.72675 -13.36554 -13.27657 -13.03120 -12.98635 -12.94222 -12.73563 -12.68342 -12.60527 -12.39836 -12.23627 -12.03974 -11.90364 -11.88542 -11.66354 -11.55327 -11.35670 -11.17306 -10.91168 -10.50390 -9.63655 -9.22707 -7.98485 -5.28645 1.35337 1.35914 1.42943 1.60469 2.01201 2.48154 3.33777 3.39458 3.61030 3.72668 3.85303 3.91055 3.96336 3.98263 4.18271 4.24355 4.28219 4.39036 4.41714 4.54454 4.62849 4.68011 4.72278 4.78478 4.81514 4.83122 4.90971 4.95513 4.97268 5.00321 5.06606 5.13732 5.14644 5.19779 5.24408 5.27526 5.34308 5.36641 5.42916 5.46683 5.64725 5.84578 6.25850 6.45394 7.12455 7.14742 7.89697 8.07638 9.23450 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.006345 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.204500 B = 4411.919955 C = 5085.924634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.093 4.093 4 H 0.090 0.910 5 C 0.119 3.881 6 N -0.602 5.602 7 C 0.517 3.483 8 O -0.587 6.587 9 C -0.083 4.083 10 C -0.121 4.121 11 C -0.159 4.159 12 C -0.156 4.156 13 C 0.096 3.904 14 C -0.144 4.144 15 C 0.176 3.824 16 H 0.051 0.949 17 N -0.742 5.742 18 C -0.209 4.209 19 H 0.064 0.936 20 C -0.057 4.057 21 N -0.983 5.983 22 Si 0.935 3.065 23 H -0.282 1.282 24 H -0.301 1.301 25 H -0.260 1.260 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.360 0.640 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 15.362 3.876 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.113 4.113 4 H 0.108 0.892 5 C -0.004 4.004 6 N -0.333 5.333 7 C 0.307 3.693 8 O -0.468 6.468 9 C -0.086 4.086 10 C -0.178 4.178 11 C -0.216 4.216 12 C -0.213 4.213 13 C -0.026 4.026 14 C -0.184 4.184 15 C 0.068 3.932 16 H 0.069 0.931 17 N -0.386 5.386 18 C -0.340 4.340 19 H 0.082 0.918 20 C -0.248 4.248 21 N -0.635 5.635 22 Si 0.764 3.236 23 H -0.208 1.208 24 H -0.228 1.228 25 H -0.186 1.186 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.147 0.853 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.194 0.806 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.696 15.223 3.842 19.578 hybrid contribution -0.057 -0.917 -1.356 1.638 sum -11.753 14.306 2.486 18.681 Atomic orbital electron populations 1.21791 0.94676 1.02022 1.01930 1.21405 0.96212 0.95230 1.01996 1.21689 0.95537 0.96550 0.97523 0.89184 1.21557 0.98918 0.82540 0.97422 1.48156 1.08790 1.06169 1.70171 1.21308 0.85952 0.87306 0.74776 1.90621 1.17974 1.87540 1.50646 1.20825 0.97816 0.90579 0.99400 1.21633 0.96886 0.97744 1.01577 1.22290 0.97587 1.04525 0.97161 1.22270 1.01476 1.04459 0.93051 1.22462 0.78595 1.03315 0.98204 1.22499 1.01610 0.97241 0.97083 1.20429 0.90928 0.91642 0.90153 0.93126 1.42817 1.18076 1.65901 1.11793 1.19010 0.92695 1.24741 0.97593 0.91782 1.25232 0.97402 1.01388 1.00783 1.69842 1.18384 1.43639 1.31597 0.85718 0.79372 0.76826 0.81671 1.20845 1.22799 1.18558 0.92080 0.91778 0.93212 0.93610 0.91611 0.89591 0.93638 0.93560 0.89388 0.93068 0.88515 0.91310 0.92743 0.92112 0.90641 0.88840 0.92861 0.85282 0.89917 0.91405 0.80563 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.67 71.98 0.70 -2.82 16 2 C -0.11 -3.21 5.19 30.59 0.16 -3.05 16 3 C -0.09 -2.71 2.14 -10.72 -0.02 -2.74 16 4 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.12 3.69 5.00 86.36 0.43 4.12 16 6 N -0.60 -17.43 2.96 -818.06 -2.42 -19.85 16 7 C 0.52 15.00 6.48 87.66 0.57 15.56 16 8 O -0.59 -21.06 15.42 -3.05 -0.05 -21.11 16 9 C -0.08 -1.72 0.75 -52.93 -0.04 -1.76 16 10 C -0.12 -2.34 7.73 71.98 0.56 -1.79 16 11 C -0.16 -2.90 8.10 71.98 0.58 -2.32 16 12 C -0.16 -2.52 8.09 71.98 0.58 -1.94 16 13 C 0.10 2.61 3.71 86.51 0.32 2.94 16 14 C -0.14 -4.11 5.45 30.82 0.17 -3.94 16 15 C 0.18 5.99 2.53 45.02 0.11 6.10 16 16 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 17 N -0.74 -31.67 3.52 -322.82 -1.14 -32.80 16 18 C -0.21 -11.09 10.41 84.03 0.87 -10.21 16 19 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 21 N -0.98 -61.36 13.97 21.65 0.30 -61.06 16 22 Si 0.93 45.06 27.73 68.60 1.90 46.96 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 25 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.22 6.70 -2.39 -0.02 1.21 16 29 H 0.05 1.56 7.69 -2.39 -0.02 1.54 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 2.73 5.76 -2.38 -0.01 2.71 16 32 H 0.05 1.58 6.65 -2.39 -0.02 1.56 16 33 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 36 H 0.10 1.23 8.02 -2.39 -0.02 1.21 16 37 H 0.07 1.39 4.75 -2.39 -0.01 1.38 16 38 H 0.05 1.07 8.11 -2.39 -0.02 1.05 16 39 H 0.06 1.00 8.11 -2.39 -0.02 0.98 16 40 H 0.07 1.30 3.86 -2.39 -0.01 1.30 16 41 H 0.09 1.05 8.02 -2.39 -0.02 1.04 16 42 H 0.05 1.75 7.73 -2.39 -0.02 1.73 16 43 H 0.13 2.76 2.83 -2.39 -0.01 2.75 16 44 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.36 15.54 3.81 -92.71 -0.35 15.19 16 47 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -67.03 344.06 4.60 -62.44 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.54 Total: 30.02 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.46 Total: -4.60 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.25 Total: -113.71 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -67.03 4.60 -62.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.210 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds