Wall clock time and date at job start Tue Mar 31 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 H 1.09000 * 109.52232 * 305.08200 * 3 2 1 5 5 C 1.53193 * 109.49481 * 65.15897 * 3 2 1 6 6 N 1.46928 * 108.77273 * 174.58845 * 5 3 2 7 7 C 1.34772 * 120.63140 * 126.37249 * 6 5 3 8 8 O 1.21284 * 120.00021 * 354.21943 * 7 6 5 9 9 C 1.50699 * 120.00108 * 174.21375 * 7 6 5 10 10 C 1.53003 * 109.46951 * 187.68700 * 9 7 6 11 11 C 1.52998 * 109.47436 * 307.68578 * 9 7 6 12 12 C 1.52998 * 109.47035 * 67.68625 * 9 7 6 13 13 C 1.46924 * 118.73904 * 306.39436 * 6 5 3 14 14 C 1.53191 * 108.77900 * 53.60911 * 13 6 5 15 15 C 1.53041 * 109.31141 * 305.36503 * 14 13 6 16 16 H 1.08999 * 109.46175 * 181.36931 * 15 14 13 17 17 N 1.46503 * 109.46399 * 301.34459 * 15 14 13 18 18 C 1.36939 * 119.99697 * 275.00383 * 17 15 14 19 19 H 1.08001 * 120.00126 * 359.71638 * 18 17 15 20 20 C 1.38814 * 119.99767 * 179.72135 * 18 17 15 21 21 N 1.31625 * 119.99741 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00177 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46962 * 90.00038 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99846 * 22 20 18 25 25 H 1.48500 * 109.47332 * 330.00355 * 22 20 18 26 26 H 1.09008 * 109.46976 * 300.00093 * 1 2 3 27 27 H 1.08996 * 109.47460 * 59.99809 * 1 2 3 28 28 H 1.09003 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47042 * 239.99420 * 2 1 3 30 30 H 1.09003 * 109.46967 * 120.00637 * 2 1 3 31 31 H 1.09007 * 109.58550 * 54.80466 * 5 3 2 32 32 H 1.08994 * 109.70628 * 294.44850 * 5 3 2 33 33 H 1.08998 * 109.47194 * 60.00213 * 10 9 7 34 34 H 1.09004 * 109.46854 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.46991 * 299.99728 * 10 9 7 36 36 H 1.09000 * 109.46871 * 70.23310 * 11 9 7 37 37 H 1.08998 * 109.47177 * 190.23363 * 11 9 7 38 38 H 1.09002 * 109.47156 * 310.23771 * 11 9 7 39 39 H 1.09001 * 109.47059 * 72.27670 * 12 9 7 40 40 H 1.08996 * 109.47778 * 192.27637 * 12 9 7 41 41 H 1.08994 * 109.47580 * 312.28108 * 12 9 7 42 42 H 1.09008 * 109.59081 * 293.82182 * 13 6 5 43 43 H 1.08997 * 109.58939 * 173.39649 * 13 6 5 44 44 H 1.09000 * 109.50276 * 185.41618 * 14 13 6 45 45 H 1.08996 * 109.52286 * 65.32870 * 14 13 6 46 46 H 0.96994 * 120.00172 * 94.71844 * 17 15 14 47 47 H 0.97000 * 119.99785 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6386 2.1267 1.3105 6 7 2.2452 3.4643 1.3507 7 6 1.4858 4.5565 1.5673 8 8 0.2788 4.4538 1.6267 9 6 2.1365 5.9053 1.7357 10 6 1.0821 6.9312 2.1560 11 6 3.2205 5.8179 2.8119 12 6 2.7674 6.3362 0.4101 13 6 3.6953 3.5886 1.1498 14 6 4.0738 2.8880 -0.1589 15 6 3.5653 1.4449 -0.1258 16 1 3.8544 0.9368 -1.0457 17 7 4.1507 0.7473 1.0218 18 6 5.3879 0.1704 0.9140 19 1 5.9302 0.2257 -0.0184 20 6 5.9451 -0.4856 2.0031 21 7 7.1341 -1.0406 1.8992 22 14 5.0075 -0.5809 3.6158 23 1 4.1641 -1.8031 3.6266 24 1 5.9699 -0.6337 4.7455 25 1 4.1431 0.6183 3.7575 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.9965 1.5376 2.1549 32 1 0.5534 2.2159 1.3611 33 1 0.6326 6.6242 3.1003 34 1 1.5526 7.9069 2.2774 35 1 0.3099 6.9935 1.3893 36 1 4.0581 5.2299 2.4369 37 1 3.5645 6.8211 3.0633 38 1 2.8110 5.3404 3.7021 39 1 1.9818 6.6089 -0.2945 40 1 3.4177 7.1944 0.5792 41 1 3.3522 5.5123 0.0012 42 1 4.2211 3.1188 1.9811 43 1 3.9672 4.6426 1.0918 44 1 5.1579 2.8892 -0.2720 45 1 3.6198 3.4145 -0.9984 46 1 3.6637 0.6976 1.8592 47 1 7.5236 -1.4987 2.6604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037955586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:39 Heat of formation + Delta-G solvation = -25.718785 kcal Electronic energy + Delta-G solvation = -24648.213406 eV Core-core repulsion = 21445.264041 eV Total energy + Delta-G solvation = -3202.949365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.68464 -38.19960 -35.91470 -34.32913 -33.81650 -31.76733 -29.89806 -28.94941 -27.45974 -27.18403 -25.61962 -23.88872 -23.22670 -21.90997 -20.81204 -19.16365 -18.25744 -17.79433 -16.51866 -15.93829 -15.29724 -15.01534 -14.58938 -14.37469 -14.20489 -13.75438 -13.63290 -13.42640 -13.33138 -12.87489 -12.55812 -12.46957 -12.39250 -12.28855 -12.03732 -11.76493 -11.75849 -11.54911 -11.26280 -11.22500 -11.04052 -10.95800 -10.87467 -10.57216 -10.36891 -10.24279 -10.15847 -9.80878 -9.57691 -9.37641 -8.95868 -8.30525 -7.30036 -5.81338 -3.16309 2.79514 3.20989 3.31629 3.35089 3.41614 4.42662 4.54121 4.70615 4.79092 4.97377 5.08859 5.17024 5.21783 5.31484 5.39321 5.44682 5.49205 5.51783 5.54193 5.60070 5.65156 5.68798 5.72525 5.75519 5.77077 5.86566 5.89128 6.01287 6.03522 6.09450 6.13330 6.19249 6.23868 6.27631 6.32037 6.45870 6.53590 6.58238 6.67476 6.76155 6.91303 7.66472 7.95339 8.35726 8.37978 9.16318 9.89044 10.09133 11.37132 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.006418 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.889660 B = 4361.358905 C = 5079.452962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.116 3.884 6 N -0.601 5.601 7 C 0.523 3.477 8 O -0.553 6.553 9 C -0.085 4.085 10 C -0.124 4.124 11 C -0.159 4.159 12 C -0.153 4.153 13 C 0.091 3.909 14 C -0.152 4.152 15 C 0.185 3.815 16 H 0.060 0.940 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.090 0.910 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.877 3.123 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.279 1.279 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 13.037 -2.375 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.006 4.006 6 N -0.333 5.333 7 C 0.311 3.689 8 O -0.432 6.432 9 C -0.089 4.089 10 C -0.181 4.181 11 C -0.216 4.216 12 C -0.210 4.210 13 C -0.030 4.030 14 C -0.193 4.193 15 C 0.075 3.925 16 H 0.078 0.922 17 N -0.387 5.387 18 C -0.369 4.369 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.708 3.292 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.285 12.869 -2.413 16.650 hybrid contribution -0.397 -0.233 1.304 1.383 sum -10.682 12.636 -1.109 16.583 Atomic orbital electron populations 1.21856 0.96636 1.01131 1.01487 1.21429 0.94475 0.95748 1.03247 1.21789 0.97382 0.96145 0.97260 0.91042 1.21668 0.99058 0.82026 0.97863 1.48080 1.08700 1.06364 1.70111 1.20543 0.86893 0.85759 0.75746 1.90635 1.14358 1.86273 1.51902 1.20743 0.97230 0.93157 0.97727 1.21640 0.97562 0.96803 1.02133 1.22308 0.98318 1.02952 0.98021 1.22137 1.01172 1.02452 0.95281 1.22380 0.79366 1.01634 0.99639 1.22534 1.02223 0.98892 0.95614 1.20184 0.89444 0.90677 0.92196 0.92222 1.42841 1.19916 1.65722 1.10204 1.19055 0.92203 1.26672 0.99012 0.89172 1.24624 0.96445 1.00343 0.97450 1.69691 1.16261 1.41366 1.30789 0.86676 0.79389 0.77829 0.85307 1.21079 1.21791 1.20514 0.92891 0.93120 0.93059 0.91528 0.91210 0.91812 0.89388 0.92301 0.92241 0.91964 0.90171 0.91620 0.92236 0.92067 0.91395 0.90652 0.90402 0.88471 0.90234 0.92945 0.80608 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.68 37.16 0.36 -1.63 16 2 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16 3 C -0.11 -1.63 2.14 -90.50 -0.19 -1.83 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 5 C 0.12 1.88 5.04 -3.71 -0.02 1.86 16 6 N -0.60 -9.26 2.96 -172.77 -0.51 -9.77 16 7 C 0.52 8.07 6.45 -10.99 -0.07 8.00 16 8 O -0.55 -10.19 15.40 5.55 0.09 -10.10 16 9 C -0.09 -1.02 0.75 -155.66 -0.12 -1.13 16 10 C -0.12 -1.37 7.75 37.16 0.29 -1.08 16 11 C -0.16 -1.73 7.97 37.16 0.30 -1.44 16 12 C -0.15 -1.55 8.10 37.16 0.30 -1.24 16 13 C 0.09 1.35 3.73 -3.71 -0.01 1.33 16 14 C -0.15 -2.35 5.62 -26.61 -0.15 -2.49 16 15 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 16 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 17 N -0.74 -15.95 3.52 -53.38 -0.19 -16.14 16 18 C -0.24 -6.27 10.41 -15.06 -0.16 -6.42 16 19 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 22 Si 0.88 21.45 27.73 -169.99 -4.71 16.74 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 H 0.05 0.69 6.70 -51.92 -0.35 0.34 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.18 7.71 -51.93 -0.40 0.78 16 31 H 0.06 1.12 6.64 -51.92 -0.34 0.77 16 32 H 0.09 1.44 5.72 -51.93 -0.30 1.15 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.73 8.01 -51.93 -0.42 0.31 16 36 H 0.08 0.89 4.70 -51.93 -0.24 0.64 16 37 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 38 H 0.06 0.71 8.11 -51.93 -0.42 0.28 16 39 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.07 0.79 4.96 -51.93 -0.26 0.54 16 42 H 0.08 1.33 7.72 -51.92 -0.40 0.93 16 43 H 0.10 1.19 2.56 -51.93 -0.13 1.06 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.05 0.72 7.99 -51.93 -0.42 0.30 16 46 H 0.36 7.83 3.82 -40.82 -0.16 7.68 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -30.40 345.54 -7.29 -37.70 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.07 Total: 8.62 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 0.12 Total: -4.70 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.08 Total: -53.46 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.40 -7.29 -37.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.977 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds