Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 H 1.09000 * 109.52232 * 305.08200 * 3 2 1 5 5 C 1.53193 * 109.49481 * 65.15897 * 3 2 1 6 6 N 1.46928 * 108.77273 * 174.58845 * 5 3 2 7 7 C 1.34772 * 120.63140 * 126.37249 * 6 5 3 8 8 O 1.21284 * 120.00021 * 354.21943 * 7 6 5 9 9 C 1.50699 * 120.00108 * 174.21375 * 7 6 5 10 10 C 1.53003 * 109.46951 * 187.68700 * 9 7 6 11 11 C 1.52998 * 109.47436 * 307.68578 * 9 7 6 12 12 C 1.52998 * 109.47035 * 67.68625 * 9 7 6 13 13 C 1.46924 * 118.73904 * 306.39436 * 6 5 3 14 14 C 1.53191 * 108.77900 * 53.60911 * 13 6 5 15 15 C 1.53041 * 109.31141 * 305.36503 * 14 13 6 16 16 H 1.08999 * 109.46175 * 181.36931 * 15 14 13 17 17 N 1.46503 * 109.46399 * 301.34459 * 15 14 13 18 18 C 1.36939 * 119.99697 * 275.00383 * 17 15 14 19 19 H 1.08001 * 120.00126 * 359.71638 * 18 17 15 20 20 C 1.38814 * 119.99767 * 179.72135 * 18 17 15 21 21 N 1.31625 * 119.99741 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00177 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46962 * 90.00038 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99846 * 22 20 18 25 25 H 1.48500 * 109.47332 * 330.00355 * 22 20 18 26 26 H 1.09008 * 109.46976 * 300.00093 * 1 2 3 27 27 H 1.08996 * 109.47460 * 59.99809 * 1 2 3 28 28 H 1.09003 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47042 * 239.99420 * 2 1 3 30 30 H 1.09003 * 109.46967 * 120.00637 * 2 1 3 31 31 H 1.09007 * 109.58550 * 54.80466 * 5 3 2 32 32 H 1.08994 * 109.70628 * 294.44850 * 5 3 2 33 33 H 1.08998 * 109.47194 * 60.00213 * 10 9 7 34 34 H 1.09004 * 109.46854 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.46991 * 299.99728 * 10 9 7 36 36 H 1.09000 * 109.46871 * 70.23310 * 11 9 7 37 37 H 1.08998 * 109.47177 * 190.23363 * 11 9 7 38 38 H 1.09002 * 109.47156 * 310.23771 * 11 9 7 39 39 H 1.09001 * 109.47059 * 72.27670 * 12 9 7 40 40 H 1.08996 * 109.47778 * 192.27637 * 12 9 7 41 41 H 1.08994 * 109.47580 * 312.28108 * 12 9 7 42 42 H 1.09008 * 109.59081 * 293.82182 * 13 6 5 43 43 H 1.08997 * 109.58939 * 173.39649 * 13 6 5 44 44 H 1.09000 * 109.50276 * 185.41618 * 14 13 6 45 45 H 1.08996 * 109.52286 * 65.32870 * 14 13 6 46 46 H 0.96994 * 120.00172 * 94.71844 * 17 15 14 47 47 H 0.97000 * 119.99785 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6386 2.1267 1.3105 6 7 2.2452 3.4643 1.3507 7 6 1.4858 4.5565 1.5673 8 8 0.2788 4.4538 1.6267 9 6 2.1365 5.9053 1.7357 10 6 1.0821 6.9312 2.1560 11 6 3.2205 5.8179 2.8119 12 6 2.7674 6.3362 0.4101 13 6 3.6953 3.5886 1.1498 14 6 4.0738 2.8880 -0.1589 15 6 3.5653 1.4449 -0.1258 16 1 3.8544 0.9368 -1.0457 17 7 4.1507 0.7473 1.0218 18 6 5.3879 0.1704 0.9140 19 1 5.9302 0.2257 -0.0184 20 6 5.9451 -0.4856 2.0031 21 7 7.1341 -1.0406 1.8992 22 14 5.0075 -0.5809 3.6158 23 1 4.1641 -1.8031 3.6266 24 1 5.9699 -0.6337 4.7455 25 1 4.1431 0.6183 3.7575 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.9965 1.5376 2.1549 32 1 0.5534 2.2159 1.3611 33 1 0.6326 6.6242 3.1003 34 1 1.5526 7.9069 2.2774 35 1 0.3099 6.9935 1.3893 36 1 4.0581 5.2299 2.4369 37 1 3.5645 6.8211 3.0633 38 1 2.8110 5.3404 3.7021 39 1 1.9818 6.6089 -0.2945 40 1 3.4177 7.1944 0.5792 41 1 3.3522 5.5123 0.0012 42 1 4.2211 3.1188 1.9811 43 1 3.9672 4.6426 1.0918 44 1 5.1579 2.8892 -0.2720 45 1 3.6198 3.4145 -0.9984 46 1 3.6637 0.6976 1.8592 47 1 7.5236 -1.4987 2.6604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037955586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = -43.581257 kcal Electronic energy + Delta-G solvation = -24648.987981 eV Core-core repulsion = 21445.264041 eV Total energy + Delta-G solvation = -3203.723940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88863 -39.53244 -37.01256 -35.84581 -35.19691 -33.56420 -31.49942 -30.24023 -28.26754 -28.07831 -26.96822 -25.22992 -24.98080 -23.07605 -22.07432 -20.42026 -19.92527 -19.40884 -17.70733 -17.08173 -16.76907 -16.35583 -16.01814 -15.86350 -15.41642 -15.09926 -14.90481 -14.68317 -14.60612 -14.27306 -14.10437 -13.76053 -13.33642 -13.24959 -13.10294 -13.01274 -12.93733 -12.75118 -12.67399 -12.62643 -12.39153 -12.27843 -12.03870 -11.91179 -11.87387 -11.65593 -11.55903 -11.35467 -11.15429 -10.91154 -10.51568 -9.63076 -9.22527 -7.98277 -5.28613 1.35090 1.36911 1.43441 1.60469 2.01449 2.48468 3.33789 3.38349 3.60497 3.73842 3.83921 3.89715 3.94976 3.98179 4.19083 4.24877 4.29301 4.38407 4.41891 4.54715 4.62801 4.65572 4.70603 4.77071 4.81124 4.82399 4.92753 4.93405 4.95714 5.00778 5.06184 5.13973 5.14608 5.20356 5.24567 5.26121 5.34004 5.35935 5.41903 5.47031 5.64626 5.84524 6.25933 6.45593 7.12493 7.14583 7.89483 8.07828 9.23660 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.006418 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.889660 B = 4361.358905 C = 5079.452962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.093 4.093 4 H 0.087 0.913 5 C 0.118 3.882 6 N -0.602 5.602 7 C 0.517 3.483 8 O -0.586 6.586 9 C -0.084 4.084 10 C -0.121 4.121 11 C -0.157 4.157 12 C -0.151 4.151 13 C 0.097 3.903 14 C -0.145 4.145 15 C 0.177 3.823 16 H 0.050 0.950 17 N -0.741 5.741 18 C -0.210 4.210 19 H 0.063 0.937 20 C -0.057 4.057 21 N -0.983 5.983 22 Si 0.937 3.063 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.259 1.259 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.361 0.639 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 15.335 -2.619 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.113 4.113 4 H 0.105 0.895 5 C -0.005 4.005 6 N -0.333 5.333 7 C 0.307 3.693 8 O -0.467 6.467 9 C -0.087 4.087 10 C -0.179 4.179 11 C -0.214 4.214 12 C -0.208 4.208 13 C -0.024 4.024 14 C -0.186 4.186 15 C 0.069 3.931 16 H 0.068 0.932 17 N -0.385 5.385 18 C -0.341 4.341 19 H 0.081 0.919 20 C -0.249 4.249 21 N -0.635 5.635 22 Si 0.767 3.233 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.184 1.184 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.584 15.207 -2.683 19.304 hybrid contribution -0.047 -0.916 1.272 1.569 sum -11.630 14.291 -1.411 18.479 Atomic orbital electron populations 1.21790 0.94682 1.02020 1.01922 1.21404 0.96197 0.95152 1.02067 1.21683 0.95482 0.96619 0.97543 0.89466 1.21574 0.98989 0.82524 0.97437 1.48145 1.08904 1.06193 1.70028 1.21290 0.86583 0.86874 0.74573 1.90618 1.15909 1.86887 1.53267 1.20835 0.97600 0.91003 0.99232 1.21640 0.97266 0.97931 1.01028 1.22305 0.97605 1.04454 0.97027 1.22142 1.01433 1.03244 0.93946 1.22394 0.78722 1.03218 0.98090 1.22415 1.01586 0.97377 0.97180 1.20420 0.90937 0.91546 0.90224 0.93157 1.42801 1.18413 1.65827 1.11476 1.19005 0.93049 1.24621 0.97426 0.91871 1.25247 0.97413 1.01367 1.00823 1.69850 1.18379 1.43659 1.31592 0.85685 0.78103 0.78387 0.81171 1.21130 1.22668 1.18420 0.93125 0.91944 0.92026 0.91676 0.93397 0.93409 0.89518 0.93650 0.89329 0.92931 0.90470 0.88876 0.93638 0.91961 0.88724 0.91114 0.92799 0.85411 0.91373 0.90303 0.80511 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.68 71.98 0.70 -2.83 16 2 C -0.11 -3.20 5.19 30.59 0.16 -3.04 16 3 C -0.09 -2.75 2.14 -10.72 -0.02 -2.78 16 4 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.12 3.66 5.04 86.36 0.43 4.10 16 6 N -0.60 -17.54 2.96 -818.90 -2.42 -19.97 16 7 C 0.52 15.04 6.45 87.66 0.57 15.61 16 8 O -0.59 -20.93 15.40 -3.04 -0.05 -20.97 16 9 C -0.08 -1.75 0.75 -52.93 -0.04 -1.79 16 10 C -0.12 -2.36 7.75 71.98 0.56 -1.80 16 11 C -0.16 -2.95 7.97 71.98 0.57 -2.38 16 12 C -0.15 -2.46 8.10 71.98 0.58 -1.88 16 13 C 0.10 2.68 3.73 86.36 0.32 3.00 16 14 C -0.15 -4.23 5.62 30.67 0.17 -4.06 16 15 C 0.18 6.06 2.53 45.02 0.11 6.18 16 16 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 17 N -0.74 -31.64 3.52 -322.80 -1.14 -32.78 16 18 C -0.21 -11.13 10.41 84.03 0.87 -10.25 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 20 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16 21 N -0.98 -61.32 13.97 21.65 0.30 -61.02 16 22 Si 0.94 44.90 27.73 68.60 1.90 46.80 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16 26 H 0.05 1.24 6.70 -2.38 -0.02 1.22 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.60 7.71 -2.39 -0.02 1.58 16 31 H 0.05 1.64 6.64 -2.38 -0.02 1.62 16 32 H 0.09 2.75 5.72 -2.39 -0.01 2.74 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.12 8.01 -2.39 -0.02 1.10 16 36 H 0.08 1.49 4.70 -2.39 -0.01 1.48 16 37 H 0.09 1.26 8.11 -2.39 -0.02 1.24 16 38 H 0.04 0.98 8.11 -2.39 -0.02 0.97 16 39 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 40 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 41 H 0.07 1.22 4.96 -2.39 -0.01 1.21 16 42 H 0.05 1.77 7.72 -2.38 -0.02 1.76 16 43 H 0.13 2.75 2.56 -2.39 -0.01 2.75 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 1.92 7.99 -2.39 -0.02 1.90 16 46 H 0.36 15.48 3.82 -92.71 -0.35 15.13 16 47 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -66.83 345.54 4.59 -62.25 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.53 Total: 30.39 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.46 Total: -4.70 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.26 Total: -113.76 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -66.83 4.59 -62.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.664 kcal (2) G-P(sol) polarization free energy of solvation -66.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds