Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 H 1.09000 * 109.50027 * 305.06597 * 3 2 1 5 5 C 1.53625 * 109.45708 * 65.27469 * 3 2 1 6 6 N 1.46922 * 108.54481 * 174.73923 * 5 3 2 7 7 C 1.34776 * 120.63395 * 126.36554 * 6 5 3 8 8 O 1.21289 * 119.99511 * 353.91798 * 7 6 5 9 9 C 1.50698 * 120.00416 * 173.91418 * 7 6 5 10 10 C 1.52996 * 109.47132 * 187.70600 * 9 7 6 11 11 C 1.53003 * 109.46940 * 67.70857 * 9 7 6 12 12 C 1.53000 * 109.47037 * 307.70789 * 9 7 6 13 13 C 1.46928 * 118.73587 * 306.09584 * 6 5 3 14 14 C 1.53192 * 108.77939 * 53.86120 * 13 6 5 15 15 C 1.53041 * 109.49597 * 185.00099 * 3 2 1 16 16 H 1.09001 * 109.44983 * 298.66348 * 15 3 2 17 17 N 1.46497 * 109.46036 * 58.63118 * 15 3 2 18 18 C 1.36935 * 120.00109 * 205.06320 * 17 15 3 19 19 H 1.08006 * 119.99922 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00125 * 180.02562 * 18 17 15 21 21 N 1.31611 * 120.00214 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99834 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47129 * 89.99652 * 22 20 18 24 24 H 1.48501 * 109.46817 * 209.99838 * 22 20 18 25 25 H 1.48497 * 109.47231 * 329.99705 * 22 20 18 26 26 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46880 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.46816 * 59.99848 * 1 2 3 29 29 H 1.08997 * 109.46880 * 240.00243 * 2 1 3 30 30 H 1.08997 * 109.47207 * 120.00491 * 2 1 3 31 31 H 1.09002 * 109.73784 * 55.00324 * 5 3 2 32 32 H 1.09004 * 109.66529 * 294.43110 * 5 3 2 33 33 H 1.09007 * 109.47282 * 299.99914 * 10 9 7 34 34 H 1.09000 * 109.47097 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47174 * 60.00320 * 10 9 7 36 36 H 1.08999 * 109.47319 * 192.23642 * 11 9 7 37 37 H 1.09004 * 109.46992 * 312.23124 * 11 9 7 38 38 H 1.08993 * 109.47427 * 72.22994 * 11 9 7 39 39 H 1.08995 * 109.47204 * 310.35040 * 12 9 7 40 40 H 1.09003 * 109.47082 * 70.35307 * 12 9 7 41 41 H 1.09002 * 109.46498 * 190.34996 * 12 9 7 42 42 H 1.09003 * 109.58525 * 173.64640 * 13 6 5 43 43 H 1.08993 * 109.58599 * 293.92500 * 13 6 5 44 44 H 1.08996 * 109.49927 * 65.30952 * 14 13 6 45 45 H 1.08990 * 109.49898 * 185.38225 * 14 13 6 46 46 H 0.97001 * 120.00221 * 25.06876 * 17 15 3 47 47 H 0.96995 * 120.00587 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 -0.8410 5 6 1.6394 2.1269 1.3157 6 7 2.2451 3.4650 1.3497 7 6 1.4858 4.5572 1.5665 8 8 0.2787 4.4545 1.6260 9 6 2.1364 5.9060 1.7352 10 6 1.0822 6.9317 2.1562 11 6 2.7669 6.3374 0.4095 12 6 3.2208 5.8182 2.8110 13 6 3.6952 3.5894 1.1487 14 6 4.0737 2.8881 -0.1597 15 6 3.5653 1.4450 -0.1258 16 1 4.0007 0.9266 0.7285 17 7 3.9542 0.7613 -1.3617 18 6 5.1918 0.1844 -1.4647 19 1 5.8811 0.2331 -0.6346 20 6 5.5606 -0.4629 -2.6360 21 7 4.7209 -0.5218 -3.6477 22 14 7.2487 -1.2505 -2.7762 23 1 7.1775 -2.6596 -2.3130 24 1 7.6945 -1.2167 -4.1923 25 1 8.2159 -0.5012 -1.9347 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0009 1.5407 2.1606 32 1 0.5542 2.2156 1.3674 33 1 0.3096 6.9943 1.3898 34 1 1.5528 7.9074 2.2778 35 1 0.6331 6.6244 3.1006 36 1 3.4167 7.1961 0.5786 37 1 3.3522 5.5139 0.0005 38 1 1.9811 6.6096 -0.2950 39 1 2.8123 5.3385 3.7003 40 1 4.0593 5.2320 2.4347 41 1 3.5634 6.8215 3.0642 42 1 3.9670 4.6434 1.0902 43 1 4.2209 3.1223 1.9814 44 1 3.6192 3.4142 -0.9991 45 1 5.1577 2.8898 -0.2730 46 1 3.3351 0.7174 -2.1071 47 1 4.9783 -0.9744 -4.4660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037955587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = -31.820434 kcal Electronic energy + Delta-G solvation = -24110.964427 eV Core-core repulsion = 20907.750474 eV Total energy + Delta-G solvation = -3203.213953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66101 -37.96482 -35.95163 -34.55044 -33.66676 -31.71054 -29.56651 -28.80990 -27.50151 -27.19431 -25.39840 -23.81439 -23.20782 -21.53887 -20.77442 -19.65041 -18.58830 -17.10423 -16.57182 -15.98851 -15.23193 -15.04263 -14.54108 -14.40684 -13.88240 -13.76936 -13.58052 -13.37054 -13.27326 -12.85731 -12.59126 -12.47400 -12.33389 -12.14590 -11.98971 -11.79517 -11.67793 -11.58463 -11.25504 -11.06892 -10.94783 -10.91562 -10.70462 -10.52651 -10.29887 -10.20758 -10.12994 -9.73375 -9.58566 -9.41760 -8.89615 -8.39740 -6.97094 -5.78704 -3.07342 2.75667 3.15782 3.41111 3.46419 3.48131 4.38005 4.56224 4.66516 4.75282 4.99486 5.09864 5.23719 5.28677 5.35766 5.39622 5.45479 5.47680 5.54817 5.57527 5.61523 5.68216 5.68530 5.70763 5.73673 5.83357 5.92883 5.97384 6.03479 6.09685 6.13803 6.16769 6.22660 6.33601 6.38542 6.42102 6.47491 6.60528 6.70492 6.84101 6.97222 7.06880 7.59682 7.67287 8.31939 8.39486 9.50978 10.08717 10.43650 11.43766 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.004786 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.030461 B = 5848.441954 C = 6745.624062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.603 5.603 7 C 0.523 3.477 8 O -0.550 6.550 9 C -0.086 4.086 10 C -0.124 4.124 11 C -0.155 4.155 12 C -0.157 4.157 13 C 0.086 3.914 14 C -0.153 4.153 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.720 5.720 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 11.752 11.905 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.005 4.005 6 N -0.335 5.335 7 C 0.311 3.689 8 O -0.428 6.428 9 C -0.089 4.089 10 C -0.182 4.182 11 C -0.212 4.212 12 C -0.214 4.214 13 C -0.037 4.037 14 C -0.194 4.194 15 C 0.073 3.927 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.728 11.603 11.941 17.308 hybrid contribution 0.880 -0.520 -0.473 1.126 sum -3.849 11.083 11.468 16.406 Atomic orbital electron populations 1.21838 0.96835 1.00972 1.01301 1.21452 0.94365 0.95798 1.03391 1.21846 0.97566 0.96181 0.96725 0.91256 1.21831 0.99399 0.81621 0.97630 1.48091 1.08479 1.06602 1.70331 1.20550 0.86932 0.85734 0.75681 1.90649 1.14326 1.86188 1.51601 1.20749 0.97210 0.93203 0.97717 1.21646 0.97624 0.96795 1.02147 1.22152 1.01322 1.02493 0.95256 1.22292 0.98218 1.02941 0.97945 1.22500 0.79799 1.02409 0.98967 1.22706 1.02112 0.99368 0.95215 1.20178 0.90828 0.90514 0.91130 0.93514 1.42413 1.16490 1.64422 1.12733 1.19210 0.91830 1.27335 0.98552 0.91273 1.24715 0.98099 1.01544 0.96422 1.69651 1.35285 1.48327 1.04737 0.86239 0.84072 0.79358 0.76793 1.21782 1.21855 1.20824 0.93207 0.93252 0.93010 0.89837 0.92524 0.91835 0.89265 0.91875 0.92232 0.92300 0.91396 0.90568 0.91917 0.92264 0.90379 0.91634 0.88171 0.91714 0.92187 0.90611 0.78215 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.68 37.16 0.36 -1.81 16 2 C -0.11 -1.84 5.31 -26.73 -0.14 -1.98 16 3 C -0.10 -1.71 1.93 -90.27 -0.17 -1.89 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.12 1.75 5.36 -3.49 -0.02 1.74 16 6 N -0.60 -8.55 2.95 -172.50 -0.51 -9.06 16 7 C 0.52 7.68 6.45 -10.99 -0.07 7.61 16 8 O -0.55 -9.87 15.40 5.55 0.09 -9.78 16 9 C -0.09 -0.95 0.75 -155.66 -0.12 -1.07 16 10 C -0.12 -1.31 7.75 37.16 0.29 -1.02 16 11 C -0.16 -1.58 8.10 37.16 0.30 -1.28 16 12 C -0.16 -1.42 7.97 37.16 0.30 -1.12 16 13 C 0.09 1.10 3.98 -3.71 -0.01 1.08 16 14 C -0.15 -2.49 5.50 -26.61 -0.15 -2.64 16 15 C 0.18 3.43 2.19 -67.89 -0.15 3.28 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -17.06 4.33 -53.38 -0.23 -17.29 16 18 C -0.24 -6.30 9.93 -15.06 -0.15 -6.44 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 22 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.63 7.21 -51.93 -0.37 1.26 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.40 5.73 -51.93 -0.30 1.11 16 33 H 0.06 0.73 8.02 -51.92 -0.42 0.32 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.08 0.84 4.97 -51.93 -0.26 0.58 16 38 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 40 H 0.08 0.67 4.71 -51.93 -0.24 0.43 16 41 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 42 H 0.10 1.08 2.56 -51.93 -0.13 0.95 16 43 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.06 1.04 8.00 -51.93 -0.42 0.63 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.38 9.88 7.51 -40.82 -0.31 9.57 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -30.19 352.30 -7.72 -37.92 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.25 Total: 8.79 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 0.17 Total: -5.96 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.02 Total: -53.08 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.19 -7.72 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.096 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds