Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 H 1.09000 * 109.50027 * 305.06597 * 3 2 1 5 5 C 1.53625 * 109.45708 * 65.27469 * 3 2 1 6 6 N 1.46922 * 108.54481 * 174.73923 * 5 3 2 7 7 C 1.34776 * 120.63395 * 126.36554 * 6 5 3 8 8 O 1.21289 * 119.99511 * 353.91798 * 7 6 5 9 9 C 1.50698 * 120.00416 * 173.91418 * 7 6 5 10 10 C 1.52996 * 109.47132 * 187.70600 * 9 7 6 11 11 C 1.53003 * 109.46940 * 67.70857 * 9 7 6 12 12 C 1.53000 * 109.47037 * 307.70789 * 9 7 6 13 13 C 1.46928 * 118.73587 * 306.09584 * 6 5 3 14 14 C 1.53192 * 108.77939 * 53.86120 * 13 6 5 15 15 C 1.53041 * 109.49597 * 185.00099 * 3 2 1 16 16 H 1.09001 * 109.44983 * 298.66348 * 15 3 2 17 17 N 1.46497 * 109.46036 * 58.63118 * 15 3 2 18 18 C 1.36935 * 120.00109 * 205.06320 * 17 15 3 19 19 H 1.08006 * 119.99922 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00125 * 180.02562 * 18 17 15 21 21 N 1.31611 * 120.00214 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99834 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47129 * 89.99652 * 22 20 18 24 24 H 1.48501 * 109.46817 * 209.99838 * 22 20 18 25 25 H 1.48497 * 109.47231 * 329.99705 * 22 20 18 26 26 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46880 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.46816 * 59.99848 * 1 2 3 29 29 H 1.08997 * 109.46880 * 240.00243 * 2 1 3 30 30 H 1.08997 * 109.47207 * 120.00491 * 2 1 3 31 31 H 1.09002 * 109.73784 * 55.00324 * 5 3 2 32 32 H 1.09004 * 109.66529 * 294.43110 * 5 3 2 33 33 H 1.09007 * 109.47282 * 299.99914 * 10 9 7 34 34 H 1.09000 * 109.47097 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47174 * 60.00320 * 10 9 7 36 36 H 1.08999 * 109.47319 * 192.23642 * 11 9 7 37 37 H 1.09004 * 109.46992 * 312.23124 * 11 9 7 38 38 H 1.08993 * 109.47427 * 72.22994 * 11 9 7 39 39 H 1.08995 * 109.47204 * 310.35040 * 12 9 7 40 40 H 1.09003 * 109.47082 * 70.35307 * 12 9 7 41 41 H 1.09002 * 109.46498 * 190.34996 * 12 9 7 42 42 H 1.09003 * 109.58525 * 173.64640 * 13 6 5 43 43 H 1.08993 * 109.58599 * 293.92500 * 13 6 5 44 44 H 1.08996 * 109.49927 * 65.30952 * 14 13 6 45 45 H 1.08990 * 109.49898 * 185.38225 * 14 13 6 46 46 H 0.97001 * 120.00221 * 25.06876 * 17 15 3 47 47 H 0.96995 * 120.00587 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 -0.8410 5 6 1.6394 2.1269 1.3157 6 7 2.2451 3.4650 1.3497 7 6 1.4858 4.5572 1.5665 8 8 0.2787 4.4545 1.6260 9 6 2.1364 5.9060 1.7352 10 6 1.0822 6.9317 2.1562 11 6 2.7669 6.3374 0.4095 12 6 3.2208 5.8182 2.8110 13 6 3.6952 3.5894 1.1487 14 6 4.0737 2.8881 -0.1597 15 6 3.5653 1.4450 -0.1258 16 1 4.0007 0.9266 0.7285 17 7 3.9542 0.7613 -1.3617 18 6 5.1918 0.1844 -1.4647 19 1 5.8811 0.2331 -0.6346 20 6 5.5606 -0.4629 -2.6360 21 7 4.7209 -0.5218 -3.6477 22 14 7.2487 -1.2505 -2.7762 23 1 7.1775 -2.6596 -2.3130 24 1 7.6945 -1.2167 -4.1923 25 1 8.2159 -0.5012 -1.9347 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0009 1.5407 2.1606 32 1 0.5542 2.2156 1.3674 33 1 0.3096 6.9943 1.3898 34 1 1.5528 7.9074 2.2778 35 1 0.6331 6.6244 3.1006 36 1 3.4167 7.1961 0.5786 37 1 3.3522 5.5139 0.0005 38 1 1.9811 6.6096 -0.2950 39 1 2.8123 5.3385 3.7003 40 1 4.0593 5.2320 2.4347 41 1 3.5634 6.8215 3.0642 42 1 3.9670 4.6434 1.0902 43 1 4.2209 3.1223 1.9814 44 1 3.6192 3.4142 -0.9991 45 1 5.1577 2.8898 -0.2730 46 1 3.3351 0.7174 -2.1071 47 1 4.9783 -0.9744 -4.4660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037955587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = -49.560343 kcal Electronic energy + Delta-G solvation = -24111.733687 eV Core-core repulsion = 20907.750474 eV Total energy + Delta-G solvation = -3203.983213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79894 -39.31694 -37.00100 -36.06709 -35.10140 -33.44210 -31.09869 -30.17277 -28.24458 -28.05960 -26.91460 -25.22135 -24.74308 -22.74685 -22.12049 -21.03553 -19.74080 -19.02594 -17.71831 -17.06857 -16.77536 -16.33070 -15.84161 -15.70632 -15.28430 -15.19611 -14.75724 -14.70983 -14.57232 -14.26612 -13.83307 -13.56935 -13.31226 -13.11226 -13.06103 -12.99894 -12.83432 -12.76799 -12.65267 -12.60732 -12.45649 -12.14782 -12.06843 -11.88738 -11.83745 -11.65697 -11.53921 -11.34002 -11.09148 -10.85852 -10.49960 -9.62616 -8.94357 -7.89652 -5.17239 1.49599 1.50417 1.58460 1.62432 2.04113 2.59129 3.39992 3.44172 3.76413 3.77728 3.87180 3.94510 3.99803 4.06493 4.21526 4.29001 4.33758 4.41765 4.45018 4.62789 4.66784 4.70826 4.73183 4.79444 4.80196 4.83960 4.87913 4.95641 4.96077 5.01090 5.04969 5.08924 5.15100 5.25254 5.28667 5.33757 5.38121 5.40140 5.48381 5.53252 5.59159 5.68487 6.31361 6.46106 7.17352 7.38087 8.14095 8.37611 9.34007 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.004786 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.030461 B = 5848.441954 C = 6745.624062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.047 0.953 5 C 0.124 3.876 6 N -0.604 5.604 7 C 0.515 3.485 8 O -0.588 6.588 9 C -0.083 4.083 10 C -0.123 4.123 11 C -0.154 4.154 12 C -0.154 4.154 13 C 0.094 3.906 14 C -0.144 4.144 15 C 0.179 3.821 16 H 0.048 0.952 17 N -0.731 5.731 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.076 4.076 21 N -0.972 5.972 22 Si 0.967 3.033 23 H -0.291 1.291 24 H -0.301 1.301 25 H -0.267 1.267 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.369 0.631 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 13.260 14.171 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.335 5.335 7 C 0.305 3.695 8 O -0.469 6.469 9 C -0.086 4.086 10 C -0.180 4.180 11 C -0.211 4.211 12 C -0.210 4.210 13 C -0.028 4.028 14 C -0.184 4.184 15 C 0.071 3.929 16 H 0.066 0.934 17 N -0.370 5.370 18 C -0.361 4.361 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.623 5.623 22 Si 0.797 3.203 23 H -0.219 1.219 24 H -0.228 1.228 25 H -0.191 1.191 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.201 0.799 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.443 13.139 14.265 19.697 hybrid contribution 0.420 -0.963 -1.134 1.546 sum -3.024 12.177 13.131 18.161 Atomic orbital electron populations 1.21770 0.95029 1.01867 1.01564 1.21358 0.95952 0.95316 1.01914 1.21691 0.95978 0.96316 0.97174 0.93401 1.21710 0.99167 0.82302 0.96766 1.48176 1.09059 1.06295 1.70011 1.21329 0.86594 0.86962 0.74580 1.90630 1.16118 1.86847 1.53271 1.20830 0.97884 0.90852 0.99049 1.21648 0.97248 0.98073 1.01041 1.22160 1.01272 1.03240 0.94390 1.22291 0.97289 1.04651 0.96804 1.22581 0.78992 1.03850 0.97358 1.22504 1.01382 0.97624 0.96936 1.20414 0.92178 0.91439 0.88917 0.93433 1.42592 1.15533 1.64987 1.13885 1.19600 0.92570 1.25655 0.98296 0.90372 1.25467 1.01532 1.03219 0.96530 1.69818 1.37165 1.50126 1.05181 0.85230 0.80482 0.78371 0.76241 1.21859 1.22801 1.19144 0.92025 0.91885 0.93795 0.93493 0.91653 0.90113 0.89986 0.93679 0.89341 0.93082 0.88450 0.91489 0.92975 0.92674 0.89787 0.89119 0.85487 0.89677 0.93720 0.91205 0.79893 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.68 71.98 0.70 -3.41 16 2 C -0.11 -3.56 5.31 30.60 0.16 -3.40 16 3 C -0.09 -3.05 1.93 -10.57 -0.02 -3.07 16 4 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.12 3.54 5.36 86.51 0.46 4.01 16 6 N -0.60 -16.15 2.95 -818.06 -2.41 -18.56 16 7 C 0.52 14.44 6.45 87.66 0.57 15.01 16 8 O -0.59 -20.94 15.40 -3.06 -0.05 -20.98 16 9 C -0.08 -1.63 0.75 -52.93 -0.04 -1.67 16 10 C -0.12 -2.31 7.75 71.98 0.56 -1.76 16 11 C -0.15 -2.72 8.10 71.98 0.58 -2.14 16 12 C -0.15 -2.17 7.97 71.98 0.57 -1.59 16 13 C 0.09 2.16 3.98 86.36 0.34 2.50 16 14 C -0.14 -4.54 5.50 30.67 0.17 -4.37 16 15 C 0.18 6.63 2.19 45.02 0.10 6.73 16 16 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 17 N -0.73 -35.29 4.33 -322.81 -1.40 -36.68 16 18 C -0.23 -12.15 9.93 84.03 0.83 -11.32 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.97 -58.93 13.06 21.65 0.28 -58.64 16 22 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.61 6.70 -2.39 -0.02 1.60 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.91 7.21 -2.39 -0.02 1.89 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.53 5.73 -2.39 -0.01 2.51 16 33 H 0.04 1.00 8.02 -2.38 -0.02 0.98 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.17 8.09 -2.39 -0.02 1.15 16 37 H 0.07 1.31 4.97 -2.39 -0.01 1.30 16 38 H 0.05 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 40 H 0.08 1.07 4.71 -2.39 -0.01 1.06 16 41 H 0.09 0.88 8.11 -2.39 -0.02 0.86 16 42 H 0.13 2.31 2.56 -2.39 -0.01 2.30 16 43 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 44 H 0.04 1.54 8.00 -2.39 -0.02 1.52 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.37 19.82 7.51 -92.71 -0.70 19.12 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -66.91 352.30 4.15 -62.76 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.24 Total: 33.12 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 5.46 Total: -8.24 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.53 Total: -113.89 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -66.91 4.15 -62.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.200 kcal (2) G-P(sol) polarization free energy of solvation -66.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds