Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46831 * 2 1 4 4 H 1.08995 * 109.52157 * 55.08194 * 3 2 1 5 5 C 1.53186 * 109.49437 * 294.99656 * 3 2 1 6 6 N 1.46926 * 108.77511 * 185.41615 * 5 3 2 7 7 C 1.34773 * 120.63678 * 233.59245 * 6 5 3 8 8 O 1.21287 * 119.99499 * 354.62218 * 7 6 5 9 9 C 1.50695 * 120.00576 * 174.62767 * 7 6 5 10 10 C 1.53003 * 109.47273 * 180.96255 * 9 7 6 11 11 C 1.52996 * 109.47315 * 300.96595 * 9 7 6 12 12 C 1.53009 * 109.47006 * 60.96255 * 9 7 6 13 13 C 1.46927 * 118.73749 * 53.85961 * 6 5 3 14 14 C 1.53624 * 108.54568 * 306.09857 * 13 6 5 15 15 C 1.53040 * 109.49010 * 175.16186 * 3 2 1 16 16 H 1.09004 * 109.46266 * 61.31144 * 15 3 2 17 17 N 1.46491 * 109.46253 * 301.33463 * 15 3 2 18 18 C 1.36939 * 119.99911 * 155.00428 * 17 15 3 19 19 H 1.07995 * 120.00447 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99808 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00279 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47550 * 59.99675 * 22 20 18 24 24 H 1.48502 * 109.47349 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46962 * 299.99881 * 22 20 18 26 26 H 1.08998 * 109.47209 * 300.00113 * 1 2 3 27 27 H 1.08999 * 109.46966 * 60.00022 * 1 2 3 28 28 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46779 * 239.99567 * 2 1 3 30 30 H 1.08999 * 109.46966 * 119.99977 * 2 1 3 31 31 H 1.09000 * 109.58810 * 65.63181 * 5 3 2 32 32 H 1.08999 * 109.70909 * 305.27523 * 5 3 2 33 33 H 1.08996 * 109.46706 * 60.00345 * 10 9 7 34 34 H 1.09005 * 109.47018 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46952 * 299.99873 * 10 9 7 36 36 H 1.09005 * 109.47366 * 48.58687 * 11 9 7 37 37 H 1.08992 * 109.47517 * 168.58957 * 11 9 7 38 38 H 1.08999 * 109.46925 * 288.59480 * 11 9 7 39 39 H 1.08998 * 109.46985 * 74.34326 * 12 9 7 40 40 H 1.09001 * 109.46731 * 194.34273 * 12 9 7 41 41 H 1.08991 * 109.46720 * 314.34209 * 12 9 7 42 42 H 1.09005 * 109.58308 * 65.92904 * 13 6 5 43 43 H 1.08998 * 109.59203 * 186.35450 * 13 6 5 44 44 H 1.08994 * 109.63450 * 294.86444 * 14 13 6 45 45 H 1.08997 * 109.43456 * 174.72010 * 14 13 6 46 46 H 0.96998 * 120.00384 * 335.00485 * 17 15 3 47 47 H 0.96998 * 120.00799 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6070 1.9820 0.8424 5 6 1.6351 2.1279 -1.3088 6 7 2.2415 3.4656 -1.3494 7 6 1.4817 4.5579 -1.5638 8 8 0.3030 4.4354 -1.8221 9 6 2.0965 5.9313 -1.4826 10 6 1.0205 6.9879 -1.7413 11 6 2.6933 6.1415 -0.0896 12 6 3.2001 6.0590 -2.5348 13 6 3.6930 3.5893 -1.1579 14 6 4.0741 2.8880 0.1547 15 6 3.5656 1.4449 0.1217 16 1 3.9989 0.9269 -0.7339 17 7 3.9578 0.7608 1.3562 18 6 5.1962 0.1849 1.4562 19 1 5.8839 0.2355 0.6250 20 6 5.5676 -0.4638 2.6259 21 7 4.7298 -0.5250 3.6390 22 14 7.2572 -1.2486 2.7625 23 1 8.3021 -0.2091 2.5814 24 1 7.4066 -1.8720 4.1020 25 1 7.4063 -2.2884 1.7127 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5497 2.2173 -1.3539 32 1 1.9888 1.5405 -2.1561 33 1 0.2345 6.8969 -0.9918 34 1 1.4652 7.9814 -1.6821 35 1 0.5955 6.8382 -2.7338 36 1 3.3069 5.2808 0.1765 37 1 3.3093 7.0406 -0.0901 38 1 1.8887 6.2526 0.6373 39 1 2.7504 6.1646 -3.5220 40 1 3.8095 6.9362 -2.3173 41 1 3.8264 5.1673 -2.5143 42 1 4.2131 3.1177 -1.9917 43 1 3.9659 4.6432 -1.1033 44 1 3.6220 3.4138 0.9956 45 1 5.1585 2.8891 0.2649 46 1 3.3403 0.7157 2.1029 47 1 4.9894 -0.9779 4.4565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037955590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = -30.716816 kcal Electronic energy + Delta-G solvation = -24148.086592 eV Core-core repulsion = 20944.920496 eV Total energy + Delta-G solvation = -3203.166096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69078 -37.97073 -35.96082 -34.55372 -33.67793 -31.70701 -29.56284 -28.82493 -27.50670 -27.15277 -25.39534 -23.83070 -23.20518 -21.55147 -20.78707 -19.65327 -18.56879 -17.10595 -16.55842 -16.03548 -15.18627 -15.05485 -14.52678 -14.40239 -13.96066 -13.76589 -13.56761 -13.38468 -13.25450 -12.86928 -12.57525 -12.49187 -12.25214 -12.17939 -11.94355 -11.78877 -11.62727 -11.57552 -11.25974 -11.06014 -10.93016 -10.92786 -10.69282 -10.55699 -10.31727 -10.23855 -10.14594 -9.74272 -9.59465 -9.40576 -8.89471 -8.41120 -6.97642 -5.78902 -3.07623 2.75157 3.15507 3.41304 3.46296 3.47203 4.40236 4.56086 4.66182 4.78165 4.98537 5.12639 5.22800 5.27509 5.31280 5.43703 5.45079 5.50242 5.56826 5.58478 5.60746 5.67201 5.68785 5.71622 5.76655 5.84299 5.92575 5.97003 6.02746 6.10957 6.13442 6.16926 6.21887 6.32892 6.38021 6.41542 6.46651 6.59678 6.69343 6.83242 6.96361 7.06063 7.59059 7.66661 8.31612 8.39268 9.50706 10.08292 10.43230 11.43450 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.004837 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.908112 B = 5787.238578 C = 6674.905143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.604 5.604 7 C 0.523 3.477 8 O -0.550 6.550 9 C -0.086 4.086 10 C -0.124 4.124 11 C -0.158 4.158 12 C -0.159 4.159 13 C 0.085 3.915 14 C -0.153 4.153 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.720 5.720 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 11.732 -10.920 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.336 5.336 7 C 0.311 3.689 8 O -0.428 6.428 9 C -0.089 4.089 10 C -0.182 4.182 11 C -0.215 4.215 12 C -0.216 4.216 13 C -0.038 4.038 14 C -0.194 4.194 15 C 0.073 3.927 16 H 0.065 0.935 17 N -0.360 5.360 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.869 11.562 -11.055 16.721 hybrid contribution 0.891 -0.488 0.484 1.125 sum -3.978 11.074 -10.571 15.818 Atomic orbital electron populations 1.21843 0.96843 1.01016 1.01285 1.21451 0.94351 0.95744 1.03427 1.21772 0.97623 0.96210 0.96748 0.91285 1.21728 0.99320 0.81683 0.97646 1.48097 1.08327 1.06636 1.70502 1.20549 0.86330 0.86092 0.75884 1.90646 1.16375 1.86899 1.48890 1.20742 0.97334 0.92984 0.97806 1.21651 0.97319 0.96553 1.02667 1.22250 1.01600 1.03392 0.94293 1.22311 0.97783 1.03492 0.98061 1.22554 0.79746 1.02446 0.99049 1.22809 1.02139 0.99337 0.95130 1.20177 0.90776 0.90523 0.91179 0.93504 1.42401 1.16457 1.64447 1.12721 1.19165 0.91816 1.27435 0.98602 0.91325 1.24714 0.98086 1.01504 0.96429 1.69642 1.35334 1.48314 1.04726 0.86313 0.84193 0.79190 0.76734 1.21348 1.21761 1.21318 0.93025 0.93230 0.93180 0.92491 0.89814 0.89336 0.91884 0.92077 0.92246 0.92137 0.90190 0.91502 0.92047 0.92126 0.91380 0.90492 0.91599 0.88107 0.92031 0.90640 0.78213 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.11 -1.82 5.31 -26.72 -0.14 -1.96 16 3 C -0.10 -1.70 1.93 -90.50 -0.17 -1.87 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.77 5.30 -3.71 -0.02 1.75 16 6 N -0.60 -8.56 2.96 -172.51 -0.51 -9.07 16 7 C 0.52 7.71 6.48 -10.99 -0.07 7.64 16 8 O -0.55 -9.85 15.42 5.55 0.09 -9.77 16 9 C -0.09 -0.96 0.75 -155.66 -0.12 -1.08 16 10 C -0.12 -1.33 7.69 37.16 0.29 -1.04 16 11 C -0.16 -1.67 8.10 37.16 0.30 -1.37 16 12 C -0.16 -1.46 8.08 37.16 0.30 -1.16 16 13 C 0.08 1.08 3.89 -3.48 -0.01 1.07 16 14 C -0.15 -2.47 5.35 -26.38 -0.14 -2.61 16 15 C 0.18 3.40 2.19 -67.89 -0.15 3.25 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -16.93 4.33 -53.39 -0.23 -17.17 16 18 C -0.24 -6.30 9.93 -15.06 -0.15 -6.44 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 22 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.65 6.70 -51.93 -0.35 0.31 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 31 H 0.09 1.39 5.76 -51.93 -0.30 1.09 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.08 0.91 4.00 -51.93 -0.21 0.71 16 37 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 38 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 40 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 41 H 0.08 0.71 4.68 -51.93 -0.24 0.47 16 42 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 43 H 0.10 1.09 2.92 -51.93 -0.15 0.94 16 44 H 0.06 1.05 7.37 -51.93 -0.38 0.66 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.38 9.80 7.51 -40.82 -0.31 9.50 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -29.98 350.52 -7.66 -37.64 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.16 Total: 8.99 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 0.17 Total: -6.04 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.02 Total: -52.87 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.98 -7.66 -37.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.922 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds