Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46831 * 2 1 4 4 H 1.08995 * 109.52157 * 55.08194 * 3 2 1 5 5 C 1.53186 * 109.49437 * 294.99656 * 3 2 1 6 6 N 1.46926 * 108.77511 * 185.41615 * 5 3 2 7 7 C 1.34773 * 120.63678 * 233.59245 * 6 5 3 8 8 O 1.21287 * 119.99499 * 354.62218 * 7 6 5 9 9 C 1.50695 * 120.00576 * 174.62767 * 7 6 5 10 10 C 1.53003 * 109.47273 * 180.96255 * 9 7 6 11 11 C 1.52996 * 109.47315 * 300.96595 * 9 7 6 12 12 C 1.53009 * 109.47006 * 60.96255 * 9 7 6 13 13 C 1.46927 * 118.73749 * 53.85961 * 6 5 3 14 14 C 1.53624 * 108.54568 * 306.09857 * 13 6 5 15 15 C 1.53040 * 109.49010 * 175.16186 * 3 2 1 16 16 H 1.09004 * 109.46266 * 61.31144 * 15 3 2 17 17 N 1.46491 * 109.46253 * 301.33463 * 15 3 2 18 18 C 1.36939 * 119.99911 * 155.00428 * 17 15 3 19 19 H 1.07995 * 120.00447 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99808 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00279 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47550 * 59.99675 * 22 20 18 24 24 H 1.48502 * 109.47349 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46962 * 299.99881 * 22 20 18 26 26 H 1.08998 * 109.47209 * 300.00113 * 1 2 3 27 27 H 1.08999 * 109.46966 * 60.00022 * 1 2 3 28 28 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46779 * 239.99567 * 2 1 3 30 30 H 1.08999 * 109.46966 * 119.99977 * 2 1 3 31 31 H 1.09000 * 109.58810 * 65.63181 * 5 3 2 32 32 H 1.08999 * 109.70909 * 305.27523 * 5 3 2 33 33 H 1.08996 * 109.46706 * 60.00345 * 10 9 7 34 34 H 1.09005 * 109.47018 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46952 * 299.99873 * 10 9 7 36 36 H 1.09005 * 109.47366 * 48.58687 * 11 9 7 37 37 H 1.08992 * 109.47517 * 168.58957 * 11 9 7 38 38 H 1.08999 * 109.46925 * 288.59480 * 11 9 7 39 39 H 1.08998 * 109.46985 * 74.34326 * 12 9 7 40 40 H 1.09001 * 109.46731 * 194.34273 * 12 9 7 41 41 H 1.08991 * 109.46720 * 314.34209 * 12 9 7 42 42 H 1.09005 * 109.58308 * 65.92904 * 13 6 5 43 43 H 1.08998 * 109.59203 * 186.35450 * 13 6 5 44 44 H 1.08994 * 109.63450 * 294.86444 * 14 13 6 45 45 H 1.08997 * 109.43456 * 174.72010 * 14 13 6 46 46 H 0.96998 * 120.00384 * 335.00485 * 17 15 3 47 47 H 0.96998 * 120.00799 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6070 1.9820 0.8424 5 6 1.6351 2.1279 -1.3088 6 7 2.2415 3.4656 -1.3494 7 6 1.4817 4.5579 -1.5638 8 8 0.3030 4.4354 -1.8221 9 6 2.0965 5.9313 -1.4826 10 6 1.0205 6.9879 -1.7413 11 6 2.6933 6.1415 -0.0896 12 6 3.2001 6.0590 -2.5348 13 6 3.6930 3.5893 -1.1579 14 6 4.0741 2.8880 0.1547 15 6 3.5656 1.4449 0.1217 16 1 3.9989 0.9269 -0.7339 17 7 3.9578 0.7608 1.3562 18 6 5.1962 0.1849 1.4562 19 1 5.8839 0.2355 0.6250 20 6 5.5676 -0.4638 2.6259 21 7 4.7298 -0.5250 3.6390 22 14 7.2572 -1.2486 2.7625 23 1 8.3021 -0.2091 2.5814 24 1 7.4066 -1.8720 4.1020 25 1 7.4063 -2.2884 1.7127 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5497 2.2173 -1.3539 32 1 1.9888 1.5405 -2.1561 33 1 0.2345 6.8969 -0.9918 34 1 1.4652 7.9814 -1.6821 35 1 0.5955 6.8382 -2.7338 36 1 3.3069 5.2808 0.1765 37 1 3.3093 7.0406 -0.0901 38 1 1.8887 6.2526 0.6373 39 1 2.7504 6.1646 -3.5220 40 1 3.8095 6.9362 -2.3173 41 1 3.8264 5.1673 -2.5143 42 1 4.2131 3.1177 -1.9917 43 1 3.9659 4.6432 -1.1033 44 1 3.6220 3.4138 0.9956 45 1 5.1585 2.8891 0.2649 46 1 3.3403 0.7157 2.1029 47 1 4.9894 -0.9779 4.4565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037955590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = -48.243746 kcal Electronic energy + Delta-G solvation = -24148.846617 eV Core-core repulsion = 20944.920496 eV Total energy + Delta-G solvation = -3203.926121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83240 -39.31855 -37.02044 -36.06625 -35.10307 -33.43379 -31.08031 -30.19020 -28.26444 -28.03769 -26.91091 -25.22564 -24.73905 -22.75820 -22.13091 -21.02869 -19.72523 -19.01927 -17.71209 -17.11932 -16.77082 -16.30268 -15.84089 -15.72281 -15.29923 -15.18331 -14.80207 -14.70467 -14.54196 -14.23977 -13.78948 -13.60573 -13.37832 -13.15198 -13.00374 -12.95195 -12.79565 -12.75473 -12.62966 -12.59338 -12.43599 -12.19926 -12.06175 -11.89222 -11.84032 -11.65934 -11.54205 -11.36708 -11.08732 -10.85659 -10.49407 -9.63883 -8.93847 -7.89073 -5.16559 1.49939 1.51751 1.57628 1.61507 2.03475 2.59614 3.40968 3.44567 3.75451 3.77862 3.86791 3.95915 3.99647 4.05697 4.18712 4.29476 4.33728 4.42857 4.44546 4.62361 4.67101 4.69863 4.75388 4.79540 4.80809 4.86286 4.87496 4.92167 4.98067 5.01072 5.04676 5.08692 5.15316 5.23445 5.28544 5.34285 5.37600 5.39650 5.47606 5.53451 5.59390 5.68350 6.31805 6.45243 7.16590 7.38734 8.14831 8.38319 9.34262 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.004837 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.908112 B = 5787.238578 C = 6674.905143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.050 0.950 5 C 0.125 3.875 6 N -0.605 5.605 7 C 0.516 3.484 8 O -0.587 6.587 9 C -0.083 4.083 10 C -0.122 4.122 11 C -0.156 4.156 12 C -0.157 4.157 13 C 0.093 3.907 14 C -0.143 4.143 15 C 0.179 3.821 16 H 0.046 0.954 17 N -0.730 5.730 18 C -0.231 4.231 19 H 0.077 0.923 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.967 3.033 23 H -0.277 1.277 24 H -0.301 1.301 25 H -0.280 1.280 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 13.283 -12.887 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.336 5.336 7 C 0.306 3.694 8 O -0.468 6.468 9 C -0.086 4.086 10 C -0.180 4.180 11 C -0.213 4.213 12 C -0.214 4.214 13 C -0.029 4.029 14 C -0.184 4.184 15 C 0.070 3.930 16 H 0.064 0.936 17 N -0.369 5.369 18 C -0.363 4.363 19 H 0.095 0.905 20 C -0.266 4.266 21 N -0.622 5.622 22 Si 0.796 3.204 23 H -0.203 1.203 24 H -0.228 1.228 25 H -0.206 1.206 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.202 0.798 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.692 13.141 -13.076 18.902 hybrid contribution 0.469 -0.945 1.045 1.485 sum -3.223 12.195 -12.031 17.432 Atomic orbital electron populations 1.21775 0.95001 1.01898 1.01594 1.21358 0.95970 0.95291 1.01908 1.21612 0.96013 0.96327 0.97175 0.93122 1.21598 0.99080 0.82346 0.96818 1.48176 1.08922 1.06322 1.70165 1.21293 0.85937 0.87359 0.74812 1.90627 1.18043 1.87530 1.50555 1.20819 0.98105 0.90631 0.99052 1.21650 0.96902 0.97856 1.01573 1.22252 1.01406 1.04265 0.93418 1.22319 0.97090 1.04709 0.97264 1.22631 0.78895 1.03883 0.97455 1.22598 1.01387 0.97556 0.96868 1.20408 0.92147 0.91475 0.88924 0.93608 1.42569 1.15483 1.65014 1.13863 1.19554 0.92580 1.25787 0.98343 0.90471 1.25456 1.01485 1.03169 0.96539 1.69809 1.37165 1.50086 1.05142 0.85310 0.80506 0.78449 0.76087 1.20349 1.22799 1.20635 0.93645 0.91930 0.92048 0.91782 0.93401 0.90004 0.90450 0.93775 0.89453 0.92955 0.91183 0.88662 0.93178 0.91974 0.88803 0.90412 0.89795 0.85417 0.93252 0.91301 0.79833 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.67 71.98 0.70 -3.37 16 2 C -0.11 -3.53 5.31 30.60 0.16 -3.37 16 3 C -0.09 -3.00 1.93 -10.72 -0.02 -3.03 16 4 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.12 3.58 5.30 86.36 0.46 4.04 16 6 N -0.60 -16.18 2.96 -818.08 -2.42 -18.60 16 7 C 0.52 14.48 6.48 87.66 0.57 15.05 16 8 O -0.59 -20.75 15.42 -3.05 -0.05 -20.79 16 9 C -0.08 -1.66 0.75 -52.93 -0.04 -1.70 16 10 C -0.12 -2.37 7.69 71.98 0.55 -1.81 16 11 C -0.16 -2.90 8.10 71.98 0.58 -2.31 16 12 C -0.16 -2.28 8.08 71.99 0.58 -1.70 16 13 C 0.09 2.15 3.89 86.51 0.34 2.48 16 14 C -0.14 -4.46 5.35 30.82 0.16 -4.30 16 15 C 0.18 6.58 2.19 45.02 0.10 6.68 16 16 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 17 N -0.73 -34.98 4.33 -322.82 -1.40 -36.37 16 18 C -0.23 -12.18 9.93 84.03 0.83 -11.35 16 19 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -58.56 13.06 21.65 0.28 -58.27 16 22 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.59 6.70 -2.39 -0.02 1.57 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.93 7.22 -2.39 -0.02 1.91 16 31 H 0.08 2.51 5.76 -2.39 -0.01 2.50 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 0.99 8.11 -2.39 -0.02 0.97 16 34 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.05 1.09 8.09 -2.39 -0.02 1.07 16 36 H 0.07 1.44 4.00 -2.38 -0.01 1.43 16 37 H 0.09 1.24 7.94 -2.39 -0.02 1.22 16 38 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.06 0.91 8.06 -2.39 -0.02 0.89 16 40 H 0.09 0.92 7.92 -2.39 -0.02 0.90 16 41 H 0.08 1.11 4.68 -2.39 -0.01 1.10 16 42 H 0.08 1.71 8.13 -2.38 -0.02 1.69 16 43 H 0.13 2.32 2.92 -2.39 -0.01 2.32 16 44 H 0.05 1.66 7.37 -2.39 -0.02 1.64 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.37 19.64 7.51 -92.71 -0.70 18.95 16 47 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -66.03 350.52 4.14 -61.89 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.25 Total: 33.42 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.44 Total: -8.37 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.53 Total: -113.24 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.03 4.14 -61.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037955590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.645 kcal (2) G-P(sol) polarization free energy of solvation -66.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds