Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 H 1.09000 * 109.47505 * 305.00926 * 3 2 1 5 5 C 1.53002 * 109.46666 * 65.00730 * 3 2 1 6 6 C 1.50698 * 109.47273 * 185.00319 * 3 2 1 7 7 O 1.21283 * 120.00107 * 343.51973 * 6 3 2 8 8 N 1.34775 * 120.00191 * 163.52460 * 6 3 2 9 9 C 1.46966 * 120.37023 * 174.77699 * 8 6 3 10 10 C 1.52330 * 109.10689 * 68.33264 * 9 8 6 11 11 C 1.53797 * 109.15746 * 72.70690 * 10 9 8 12 12 C 1.52448 * 109.40534 * 282.15814 * 11 10 9 13 13 C 1.53966 * 110.72635 * 113.73076 * 12 11 10 14 14 C 1.52871 * 109.72736 * 315.63317 * 13 12 11 15 15 H 1.08999 * 109.50048 * 47.09076 * 14 13 12 16 16 N 1.46500 * 109.48672 * 167.13296 * 14 13 12 17 17 C 1.36936 * 119.99777 * 274.92183 * 16 14 13 18 18 H 1.08000 * 120.00165 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00116 * 179.71994 * 17 16 14 20 20 N 1.31624 * 120.00199 * 0.27942 * 19 17 16 21 21 Si 1.86801 * 120.00190 * 180.27232 * 19 17 16 22 22 H 1.48500 * 109.46999 * 90.00245 * 21 19 17 23 23 H 1.48495 * 109.47446 * 210.00087 * 21 19 17 24 24 H 1.48501 * 109.47212 * 330.00378 * 21 19 17 25 25 C 1.45349 * 120.36414 * 354.74940 * 8 6 3 26 26 H 1.09008 * 109.46906 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47141 * 299.98882 * 1 2 3 28 28 H 1.08994 * 109.47899 * 59.99121 * 1 2 3 29 29 H 1.09006 * 109.47141 * 240.01117 * 2 1 3 30 30 H 1.08993 * 109.47433 * 120.00625 * 2 1 3 31 31 H 1.09003 * 109.47326 * 173.43749 * 5 3 2 32 32 H 1.08998 * 109.47247 * 293.42908 * 5 3 2 33 33 H 1.08998 * 109.47572 * 53.43319 * 5 3 2 34 34 H 1.08993 * 109.53096 * 188.22824 * 9 8 6 35 35 H 1.09007 * 109.52611 * 308.37209 * 9 8 6 36 36 H 1.09001 * 109.52558 * 192.61159 * 10 9 8 37 37 H 1.09001 * 109.52722 * 312.80029 * 10 9 8 38 38 H 1.08994 * 109.48338 * 42.13981 * 11 10 9 39 39 H 1.08997 * 109.48395 * 162.18129 * 11 10 9 40 40 H 1.08997 * 109.22675 * 234.04824 * 12 11 10 41 41 H 1.08997 * 109.23067 * 353.40902 * 12 11 10 42 42 H 1.08998 * 109.42799 * 195.55665 * 13 12 11 43 43 H 1.09001 * 109.43171 * 75.71378 * 13 12 11 44 44 H 0.96998 * 120.00587 * 94.91923 * 16 14 13 45 45 H 0.96993 * 119.99985 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.67190 * 103.63554 * 25 8 6 47 47 H 1.09001 * 109.67404 * 343.10207 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9817 -0.8417 5 6 1.6352 2.1264 1.3075 6 6 3.5418 1.4444 -0.1239 7 8 4.1695 0.4297 0.0938 8 7 4.1875 2.5736 -0.4765 9 6 5.6565 2.6166 -0.4888 10 6 6.1720 1.7250 -1.6112 11 6 5.8978 2.4056 -2.9628 12 6 4.4296 2.2258 -3.3318 13 6 3.6973 3.5802 -3.3292 14 6 4.0973 4.3807 -2.0897 15 1 5.1810 4.3574 -1.9757 16 7 3.6513 5.7681 -2.2391 17 6 4.4330 6.6700 -2.9104 18 1 5.3785 6.3586 -3.3294 19 6 4.0079 7.9832 -3.0570 20 7 2.8558 8.3630 -2.5461 21 14 5.0707 9.2117 -3.9793 22 1 4.7094 9.1956 -5.4196 23 1 4.8467 10.5722 -3.4281 24 1 6.5010 8.8438 -3.8237 25 6 3.4387 3.7623 -0.8494 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3635 0.5139 -0.8898 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.0959 3.1130 1.3592 32 1 0.5507 2.2296 1.3430 33 1 1.9707 1.5240 2.1517 34 1 5.9896 3.6410 -0.6549 35 1 6.0395 2.2593 0.4671 36 1 7.2446 1.5719 -1.4914 37 1 5.6599 0.7634 -1.5770 38 1 6.1262 3.4686 -2.8875 39 1 6.5238 1.9526 -3.7316 40 1 4.3608 1.7826 -4.3252 41 1 3.9567 1.5608 -2.6092 42 1 2.6207 3.4103 -3.3192 43 1 3.9670 4.1399 -4.2249 44 1 2.8023 6.0480 -1.8626 45 1 2.5586 9.2805 -2.6488 46 1 3.4559 4.4793 -0.0287 47 1 2.4083 3.4901 -1.0781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088266633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = -37.001445 kcal Electronic energy + Delta-G solvation = -24331.377533 eV Core-core repulsion = 21127.938915 eV Total energy + Delta-G solvation = -3203.438618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.53865 -37.80639 -35.53499 -34.51444 -33.98152 -32.19467 -30.30890 -29.48488 -27.23200 -26.15740 -25.18753 -23.66984 -22.77180 -21.63827 -20.86650 -19.21688 -18.42571 -17.44608 -16.71906 -15.90680 -15.84827 -15.01804 -14.66763 -14.45327 -14.18966 -13.79069 -13.53710 -13.40275 -13.37760 -12.88183 -12.84600 -12.53923 -12.25823 -12.15197 -11.81898 -11.71231 -11.48785 -11.33862 -11.01304 -10.94735 -10.84668 -10.74757 -10.69587 -10.63568 -10.38588 -10.23375 -10.15969 -9.94600 -9.71525 -9.26484 -8.93072 -8.25104 -7.02452 -5.82931 -3.12291 2.82259 3.21204 3.39723 3.45730 3.46635 4.50941 4.61732 4.74112 4.89651 4.98226 5.13120 5.19806 5.28197 5.32309 5.40713 5.42534 5.45002 5.52821 5.56486 5.64011 5.72424 5.74964 5.83810 5.86008 5.89331 5.91189 5.94679 5.97446 6.05245 6.13518 6.22589 6.24267 6.29737 6.30083 6.34782 6.51871 6.60238 6.66607 6.79413 6.95732 7.02917 7.63962 7.68681 8.34775 8.39045 9.46719 10.01959 10.36575 11.39525 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.004996 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.362666 B = 5602.974963 C = 6334.945402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.115 4.115 4 H 0.095 0.905 5 C -0.142 4.142 6 C 0.519 3.481 7 O -0.549 6.549 8 N -0.596 5.596 9 C 0.115 3.885 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.116 4.116 13 C -0.134 4.134 14 C 0.155 3.845 15 H 0.068 0.932 16 N -0.723 5.723 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.096 3.904 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -14.201 4.862 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.136 4.136 4 H 0.113 0.887 5 C -0.200 4.200 6 C 0.308 3.692 7 O -0.427 6.427 8 N -0.329 5.329 9 C -0.007 4.007 10 C -0.175 4.175 11 C -0.163 4.163 12 C -0.154 4.154 13 C -0.174 4.174 14 C 0.045 3.955 15 H 0.086 0.914 16 N -0.364 5.364 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.028 4.028 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.649 -14.600 4.904 15.415 hybrid contribution 0.174 0.999 -0.602 1.179 sum -0.475 -13.601 4.302 14.273 Atomic orbital electron populations 1.21836 0.95596 1.01626 1.02016 1.21332 0.95279 0.94399 1.03085 1.21401 0.92428 0.98978 1.00771 0.88671 1.21777 1.02062 1.00676 0.95486 1.20565 0.89969 0.82590 0.76089 1.90632 1.68917 1.32167 1.51027 1.47771 1.06778 1.12168 1.66138 1.21522 0.79372 1.01134 0.98645 1.22041 1.00592 1.00097 0.94749 1.21810 0.96639 1.01601 0.96255 1.21701 0.95498 0.98164 1.00070 1.22440 0.98887 0.94793 1.01288 1.20935 0.98237 0.85552 0.90777 0.91412 1.42330 1.23841 1.03571 1.66653 1.19178 1.00593 0.89884 1.27278 0.91202 1.24720 0.97299 0.97347 1.01310 1.69651 1.20870 1.17503 1.49971 0.86224 0.79661 0.81015 0.79490 1.21725 1.21777 1.20737 1.22100 0.95948 0.86237 0.98468 0.92700 0.92426 0.92636 0.91731 0.91259 0.91808 0.91328 0.92244 0.89251 0.91702 0.91738 0.90437 0.90561 0.92849 0.93511 0.92652 0.93231 0.91591 0.78321 0.93467 0.91283 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 37.15 0.36 -1.02 16 2 C -0.10 -1.15 4.74 -26.73 -0.13 -1.28 16 3 C -0.11 -1.37 1.91 -91.77 -0.18 -1.54 16 4 H 0.10 1.11 6.37 -51.93 -0.33 0.78 16 5 C -0.14 -1.51 8.69 37.16 0.32 -1.19 16 6 C 0.52 7.59 5.41 -10.99 -0.06 7.53 16 7 O -0.55 -9.43 14.66 5.56 0.08 -9.35 16 8 N -0.60 -8.56 1.68 -174.35 -0.29 -8.86 16 9 C 0.12 1.62 5.20 -4.13 -0.02 1.60 16 10 C -0.14 -1.86 5.54 -26.66 -0.15 -2.01 16 11 C -0.13 -1.79 5.49 -26.60 -0.15 -1.93 16 12 C -0.12 -1.74 5.40 -26.51 -0.14 -1.88 16 13 C -0.13 -2.30 5.33 -26.29 -0.14 -2.44 16 14 C 0.16 2.80 2.29 -67.77 -0.16 2.65 16 15 H 0.07 1.26 3.29 -51.93 -0.17 1.09 16 16 N -0.72 -16.74 5.12 -53.27 -0.27 -17.01 16 17 C -0.24 -6.24 9.90 -15.06 -0.15 -6.39 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.10 1.47 4.41 -4.43 -0.02 1.45 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.48 6.72 -51.93 -0.35 0.13 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.06 0.71 7.21 -51.93 -0.37 0.34 16 32 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.27 6.07 -51.93 -0.32 0.96 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.19 6.02 -51.93 -0.31 0.88 16 38 H 0.08 1.19 5.47 -51.93 -0.28 0.90 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.85 5.38 -51.93 -0.28 0.57 16 42 H 0.05 0.84 7.87 -51.93 -0.41 0.43 16 43 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 44 H 0.38 9.43 7.80 -40.82 -0.32 9.12 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.07 1.10 8.11 -51.93 -0.42 0.67 16 47 H 0.08 1.13 5.34 -51.93 -0.28 0.85 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -29.16 344.90 -8.25 -37.41 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.97 Total: 9.06 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.70 Total: -6.84 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.16 Total: -52.16 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.16 -8.25 -37.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088266633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.412 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds