Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 H 1.09000 * 109.47505 * 305.00926 * 3 2 1 5 5 C 1.53002 * 109.46666 * 65.00730 * 3 2 1 6 6 C 1.50698 * 109.47273 * 185.00319 * 3 2 1 7 7 O 1.21283 * 120.00107 * 343.51973 * 6 3 2 8 8 N 1.34775 * 120.00191 * 163.52460 * 6 3 2 9 9 C 1.46966 * 120.37023 * 174.77699 * 8 6 3 10 10 C 1.52330 * 109.10689 * 68.33264 * 9 8 6 11 11 C 1.53797 * 109.15746 * 72.70690 * 10 9 8 12 12 C 1.52448 * 109.40534 * 282.15814 * 11 10 9 13 13 C 1.53966 * 110.72635 * 113.73076 * 12 11 10 14 14 C 1.52871 * 109.72736 * 315.63317 * 13 12 11 15 15 H 1.08999 * 109.50048 * 47.09076 * 14 13 12 16 16 N 1.46500 * 109.48672 * 167.13296 * 14 13 12 17 17 C 1.36936 * 119.99777 * 274.92183 * 16 14 13 18 18 H 1.08000 * 120.00165 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00116 * 179.71994 * 17 16 14 20 20 N 1.31624 * 120.00199 * 0.27942 * 19 17 16 21 21 Si 1.86801 * 120.00190 * 180.27232 * 19 17 16 22 22 H 1.48500 * 109.46999 * 90.00245 * 21 19 17 23 23 H 1.48495 * 109.47446 * 210.00087 * 21 19 17 24 24 H 1.48501 * 109.47212 * 330.00378 * 21 19 17 25 25 C 1.45349 * 120.36414 * 354.74940 * 8 6 3 26 26 H 1.09008 * 109.46906 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47141 * 299.98882 * 1 2 3 28 28 H 1.08994 * 109.47899 * 59.99121 * 1 2 3 29 29 H 1.09006 * 109.47141 * 240.01117 * 2 1 3 30 30 H 1.08993 * 109.47433 * 120.00625 * 2 1 3 31 31 H 1.09003 * 109.47326 * 173.43749 * 5 3 2 32 32 H 1.08998 * 109.47247 * 293.42908 * 5 3 2 33 33 H 1.08998 * 109.47572 * 53.43319 * 5 3 2 34 34 H 1.08993 * 109.53096 * 188.22824 * 9 8 6 35 35 H 1.09007 * 109.52611 * 308.37209 * 9 8 6 36 36 H 1.09001 * 109.52558 * 192.61159 * 10 9 8 37 37 H 1.09001 * 109.52722 * 312.80029 * 10 9 8 38 38 H 1.08994 * 109.48338 * 42.13981 * 11 10 9 39 39 H 1.08997 * 109.48395 * 162.18129 * 11 10 9 40 40 H 1.08997 * 109.22675 * 234.04824 * 12 11 10 41 41 H 1.08997 * 109.23067 * 353.40902 * 12 11 10 42 42 H 1.08998 * 109.42799 * 195.55665 * 13 12 11 43 43 H 1.09001 * 109.43171 * 75.71378 * 13 12 11 44 44 H 0.96998 * 120.00587 * 94.91923 * 16 14 13 45 45 H 0.96993 * 119.99985 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.67190 * 103.63554 * 25 8 6 47 47 H 1.09001 * 109.67404 * 343.10207 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9817 -0.8417 5 6 1.6352 2.1264 1.3075 6 6 3.5418 1.4444 -0.1239 7 8 4.1695 0.4297 0.0938 8 7 4.1875 2.5736 -0.4765 9 6 5.6565 2.6166 -0.4888 10 6 6.1720 1.7250 -1.6112 11 6 5.8978 2.4056 -2.9628 12 6 4.4296 2.2258 -3.3318 13 6 3.6973 3.5802 -3.3292 14 6 4.0973 4.3807 -2.0897 15 1 5.1810 4.3574 -1.9757 16 7 3.6513 5.7681 -2.2391 17 6 4.4330 6.6700 -2.9104 18 1 5.3785 6.3586 -3.3294 19 6 4.0079 7.9832 -3.0570 20 7 2.8558 8.3630 -2.5461 21 14 5.0707 9.2117 -3.9793 22 1 4.7094 9.1956 -5.4196 23 1 4.8467 10.5722 -3.4281 24 1 6.5010 8.8438 -3.8237 25 6 3.4387 3.7623 -0.8494 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3635 0.5139 -0.8898 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.0959 3.1130 1.3592 32 1 0.5507 2.2296 1.3430 33 1 1.9707 1.5240 2.1517 34 1 5.9896 3.6410 -0.6549 35 1 6.0395 2.2593 0.4671 36 1 7.2446 1.5719 -1.4914 37 1 5.6599 0.7634 -1.5770 38 1 6.1262 3.4686 -2.8875 39 1 6.5238 1.9526 -3.7316 40 1 4.3608 1.7826 -4.3252 41 1 3.9567 1.5608 -2.6092 42 1 2.6207 3.4103 -3.3192 43 1 3.9670 4.1399 -4.2249 44 1 2.8023 6.0480 -1.8626 45 1 2.5586 9.2805 -2.6488 46 1 3.4559 4.4793 -0.0287 47 1 2.4083 3.4901 -1.0781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088266633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = -52.479794 kcal Electronic energy + Delta-G solvation = -24332.048725 eV Core-core repulsion = 21127.938915 eV Total energy + Delta-G solvation = -3204.109810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74076 -39.09441 -36.63366 -36.06518 -35.18814 -33.87982 -31.75755 -30.55964 -28.67722 -27.38997 -26.20061 -25.40564 -24.00273 -22.96728 -21.87710 -20.55892 -19.68291 -19.16196 -17.99668 -17.23797 -17.09616 -16.39899 -15.90601 -15.84550 -15.38896 -15.14824 -14.96868 -14.85848 -14.46538 -14.26955 -14.01054 -13.68830 -13.45807 -13.06977 -13.01257 -12.91530 -12.80397 -12.60331 -12.48711 -12.40817 -12.32124 -12.11835 -11.97414 -11.77724 -11.62360 -11.60398 -11.52457 -11.41581 -11.34126 -10.82560 -10.44824 -9.50967 -8.95004 -7.91090 -5.18611 1.49963 1.50443 1.58213 1.66070 2.04174 2.59565 3.42785 3.48589 3.74227 3.82824 3.89922 3.99570 4.04550 4.12520 4.19188 4.19983 4.34746 4.47001 4.51490 4.55383 4.59372 4.62988 4.66890 4.74996 4.79006 4.86160 4.94613 4.97167 4.98549 5.04520 5.12717 5.13915 5.20020 5.21441 5.31772 5.37300 5.39558 5.46898 5.51241 5.54185 5.57991 5.70963 6.31126 6.48703 7.21253 7.38439 8.12327 8.35834 9.32070 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.004996 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.362666 B = 5602.974963 C = 6334.945402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.113 4.113 4 H 0.101 0.899 5 C -0.139 4.139 6 C 0.518 3.482 7 O -0.575 6.575 8 N -0.594 5.594 9 C 0.111 3.889 10 C -0.128 4.128 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.125 4.125 14 C 0.154 3.846 15 H 0.068 0.932 16 N -0.732 5.732 17 C -0.231 4.231 18 H 0.073 0.927 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.963 3.037 22 H -0.291 1.291 23 H -0.298 1.298 24 H -0.270 1.270 25 C 0.110 3.890 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.064 0.936 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -15.205 4.887 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.134 4.134 4 H 0.118 0.882 5 C -0.197 4.197 6 C 0.307 3.693 7 O -0.455 6.455 8 N -0.325 5.325 9 C -0.011 4.011 10 C -0.166 4.166 11 C -0.160 4.160 12 C -0.146 4.146 13 C -0.165 4.165 14 C 0.045 3.955 15 H 0.085 0.915 16 N -0.372 5.372 17 C -0.363 4.363 18 H 0.091 0.909 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.793 3.207 22 H -0.218 1.218 23 H -0.225 1.225 24 H -0.195 1.195 25 C -0.014 4.014 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.471 -15.645 4.925 16.409 hybrid contribution 0.166 1.214 -0.597 1.363 sum -0.305 -14.432 4.328 15.070 Atomic orbital electron populations 1.21809 0.93705 1.02483 1.02623 1.21297 0.96848 0.93503 1.02092 1.21465 0.90382 0.99860 1.01700 0.88152 1.21775 1.03316 0.99988 0.94579 1.21042 0.91050 0.81939 0.75229 1.90621 1.69740 1.32945 1.52166 1.47757 1.06937 1.11875 1.65980 1.21595 0.79273 1.01077 0.99134 1.21954 1.01561 0.98972 0.94097 1.21778 0.96258 1.00876 0.97099 1.21621 0.95735 0.96529 1.00685 1.22278 0.99314 0.95526 0.99380 1.21091 0.98422 0.83487 0.92465 0.91482 1.42465 1.23224 1.05249 1.66265 1.19499 1.00567 0.90335 1.25885 0.90879 1.25405 0.98609 0.99166 1.03061 1.69786 1.22553 1.17385 1.52017 0.85292 0.78787 0.78595 0.78027 1.21845 1.22475 1.19540 1.21851 0.96375 0.86327 0.96861 0.91806 0.91452 0.92345 0.92928 0.92088 0.92484 0.89335 0.92295 0.89561 0.91334 0.89927 0.91803 0.91901 0.91388 0.92514 0.92743 0.92998 0.94053 0.79370 0.94144 0.91742 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.67 71.98 0.70 -1.65 16 2 C -0.10 -2.07 4.74 30.59 0.15 -1.93 16 3 C -0.11 -2.52 1.91 -11.54 -0.02 -2.54 16 4 H 0.10 2.14 6.37 -2.39 -0.02 2.13 16 5 C -0.14 -2.69 8.69 71.98 0.63 -2.06 16 6 C 0.52 14.52 5.41 87.66 0.47 15.00 16 7 O -0.57 -19.23 14.66 -3.04 -0.04 -19.27 16 8 N -0.59 -16.39 1.68 -823.92 -1.39 -17.77 16 9 C 0.11 2.99 5.20 86.07 0.45 3.44 16 10 C -0.13 -3.27 5.54 30.64 0.17 -3.10 16 11 C -0.12 -3.28 5.49 30.68 0.17 -3.12 16 12 C -0.11 -3.05 5.40 30.74 0.17 -2.89 16 13 C -0.12 -4.19 5.33 30.88 0.16 -4.02 16 14 C 0.15 5.46 2.29 45.10 0.10 5.57 16 15 H 0.07 2.44 3.29 -2.39 -0.01 2.43 16 16 N -0.73 -33.83 5.12 -322.44 -1.65 -35.48 16 17 C -0.23 -12.05 9.90 84.03 0.83 -11.22 16 18 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.97 -56.67 13.06 21.65 0.28 -56.39 16 21 Si 0.96 44.70 29.55 68.60 2.03 46.72 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.11 3.24 4.41 86.74 0.38 3.62 16 26 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 0.93 6.72 -2.38 -0.02 0.92 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.06 1.18 7.21 -2.39 -0.02 1.17 16 32 H 0.09 1.37 6.90 -2.39 -0.02 1.35 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 2.38 6.07 -2.39 -0.01 2.36 16 35 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.86 6.02 -2.39 -0.01 1.85 16 38 H 0.06 1.88 5.47 -2.39 -0.01 1.86 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.58 5.38 -2.39 -0.01 1.56 16 42 H 0.05 1.70 7.87 -2.39 -0.02 1.68 16 43 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 44 H 0.37 18.53 7.80 -92.71 -0.72 17.81 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.06 2.00 8.11 -2.39 -0.02 1.98 16 47 H 0.09 2.50 5.34 -2.39 -0.01 2.48 16 Total: -1.00 -61.50 344.90 4.28 -57.22 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.23 Total: 33.25 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.82 Total: -8.27 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -2.76 Total: -109.65 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -61.50 4.28 -57.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088266633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.742 kcal (2) G-P(sol) polarization free energy of solvation -61.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds