Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47322 * 2 1 4 4 H 1.09002 * 109.47263 * 305.00270 * 3 2 1 5 5 C 1.53003 * 109.46985 * 65.00080 * 3 2 1 6 6 C 1.50700 * 109.47384 * 185.00132 * 3 2 1 7 7 O 1.21282 * 119.99677 * 343.13952 * 6 3 2 8 8 N 1.34766 * 120.00449 * 163.14185 * 6 3 2 9 9 C 1.46968 * 120.36968 * 174.14526 * 8 6 3 10 10 C 1.52335 * 109.09390 * 291.61829 * 9 8 6 11 11 C 1.53806 * 109.15984 * 287.30786 * 10 9 8 12 12 C 1.52438 * 109.41294 * 77.83799 * 11 10 9 13 13 C 1.53954 * 110.72901 * 246.26585 * 12 11 10 14 14 C 1.52881 * 109.72387 * 44.36501 * 13 12 11 15 15 H 1.08996 * 109.48801 * 312.91480 * 14 13 12 16 16 N 1.46504 * 109.48577 * 192.86166 * 14 13 12 17 17 C 1.36932 * 120.00042 * 84.99769 * 16 14 13 18 18 H 1.08002 * 120.00145 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00181 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99669 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00287 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47161 * 60.00118 * 21 19 17 23 23 H 1.48497 * 109.47512 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47069 * 300.00075 * 21 19 17 25 25 C 1.45339 * 120.36301 * 354.12463 * 8 6 3 26 26 H 1.09001 * 109.47212 * 60.00090 * 1 2 3 27 27 H 1.08996 * 109.47600 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47082 * 300.00253 * 1 2 3 29 29 H 1.09005 * 109.47082 * 239.99747 * 2 1 3 30 30 H 1.08998 * 109.46917 * 120.00334 * 2 1 3 31 31 H 1.08998 * 109.46698 * 174.04286 * 5 3 2 32 32 H 1.09001 * 109.47082 * 294.04378 * 5 3 2 33 33 H 1.08997 * 109.47195 * 54.04772 * 5 3 2 34 34 H 1.08996 * 109.53508 * 171.73054 * 9 8 6 35 35 H 1.08997 * 109.59403 * 51.53953 * 9 8 6 36 36 H 1.09003 * 109.52414 * 167.40129 * 10 9 8 37 37 H 1.09001 * 109.52300 * 47.20841 * 10 9 8 38 38 H 1.09004 * 109.47949 * 317.85869 * 11 10 9 39 39 H 1.09002 * 109.47982 * 197.82496 * 11 10 9 40 40 H 1.08998 * 109.22726 * 125.94435 * 12 11 10 41 41 H 1.09004 * 109.19478 * 6.56571 * 12 11 10 42 42 H 1.08998 * 109.42990 * 284.28913 * 13 12 11 43 43 H 1.08999 * 109.43296 * 164.43961 * 13 12 11 44 44 H 0.96998 * 119.99716 * 264.99998 * 16 14 13 45 45 H 0.97002 * 119.99932 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.67300 * 16.93912 * 25 8 6 47 47 H 1.08998 * 109.67030 * 256.40689 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1700 0.4314 0.1006 8 7 4.1870 2.5713 -0.4840 9 6 5.6559 2.6192 -0.4832 10 6 6.1561 2.5461 0.9538 11 6 5.8687 3.8835 1.6570 12 6 4.3960 3.9453 2.0458 13 6 3.6681 5.0441 1.2502 14 6 4.0844 4.9787 -0.2194 15 1 5.1692 4.8979 -0.2867 16 7 3.6409 6.1938 -0.9074 17 6 4.4169 7.3215 -0.8739 18 1 5.3557 7.3154 -0.3399 19 6 3.9965 8.4729 -1.5253 20 7 2.8517 8.4808 -2.1748 21 14 5.0547 10.0115 -1.4790 22 1 6.3789 9.7200 -2.0846 23 1 4.3879 11.0943 -2.2460 24 1 5.2389 10.4434 -0.0702 25 6 3.4378 3.7528 -0.8778 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 2.0873 3.1172 1.3541 32 1 0.5500 2.2199 1.3477 33 1 1.9802 1.5296 2.1517 34 1 5.9904 3.5513 -0.9386 35 1 6.0495 1.7751 -1.0494 36 1 7.2295 2.3564 0.9567 37 1 5.6415 1.7410 1.4782 38 1 6.1012 4.7067 0.9815 39 1 6.4848 3.9630 2.5527 40 1 4.3147 4.1601 3.1113 41 1 3.9296 2.9824 1.8372 42 1 3.9294 6.0205 1.6580 43 1 2.5911 4.8956 1.3288 44 1 2.7976 6.1994 -1.3866 45 1 2.5581 9.2853 -2.6304 46 1 2.4041 3.6597 -0.5448 47 1 3.4662 3.8608 -1.9620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088266634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = -35.265417 kcal Electronic energy + Delta-G solvation = -24486.618078 eV Core-core repulsion = 21283.254740 eV Total energy + Delta-G solvation = -3203.363338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.61218 -37.77436 -35.57074 -34.52156 -33.98378 -32.23321 -30.48580 -29.31489 -27.19163 -26.30388 -25.12819 -23.66578 -22.79436 -21.60191 -20.88816 -19.33227 -18.27953 -17.41622 -16.86866 -15.92948 -15.62369 -15.13579 -15.04793 -14.31964 -13.94522 -13.86061 -13.57873 -13.41448 -13.38933 -13.11775 -12.75025 -12.43784 -12.33101 -12.02206 -11.75667 -11.69862 -11.59036 -11.25153 -10.95651 -10.93989 -10.83217 -10.74731 -10.71367 -10.63505 -10.39907 -10.25499 -10.15287 -9.94766 -9.71502 -9.31180 -8.92901 -8.24691 -7.02725 -5.82847 -3.12289 2.81199 3.21983 3.40133 3.45516 3.45719 4.50657 4.61705 4.74857 4.92177 4.98954 5.11677 5.17350 5.29454 5.34181 5.40023 5.42174 5.44125 5.51199 5.55611 5.64027 5.72916 5.76854 5.81353 5.86081 5.87783 5.90116 5.96085 5.99602 6.04082 6.12013 6.22281 6.24172 6.26569 6.30834 6.33399 6.49642 6.58293 6.65860 6.77964 6.94734 7.03617 7.63327 7.68327 8.34733 8.38655 9.46652 10.01886 10.36479 11.39505 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.005016 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.154686 B = 5581.277620 C = 6258.798783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.113 4.113 4 H 0.093 0.907 5 C -0.156 4.156 6 C 0.520 3.480 7 O -0.550 6.550 8 N -0.597 5.597 9 C 0.114 3.886 10 C -0.134 4.134 11 C -0.126 4.126 12 C -0.123 4.123 13 C -0.135 4.135 14 C 0.156 3.844 15 H 0.068 0.932 16 N -0.723 5.723 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.093 3.907 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.383 0.617 45 H 0.256 0.744 46 H 0.082 0.918 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 -13.805 5.705 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.134 4.134 4 H 0.111 0.889 5 C -0.213 4.213 6 C 0.308 3.692 7 O -0.428 6.428 8 N -0.329 5.329 9 C -0.008 4.008 10 C -0.172 4.172 11 C -0.164 4.164 12 C -0.161 4.161 13 C -0.175 4.175 14 C 0.046 3.954 15 H 0.086 0.914 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.031 4.031 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.217 0.783 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.674 -14.178 5.810 15.337 hybrid contribution 0.194 1.121 -0.147 1.147 sum -0.480 -13.057 5.663 14.240 Atomic orbital electron populations 1.21835 0.95591 1.01605 1.02036 1.21333 0.95289 0.94424 1.03058 1.21362 0.92342 0.98915 1.00802 0.88891 1.22058 1.02205 1.01592 0.95414 1.20587 0.90004 0.82497 0.76112 1.90638 1.69022 1.32410 1.50729 1.47773 1.06775 1.12268 1.66101 1.21515 0.79484 1.02637 0.97188 1.22020 1.00695 0.98205 0.96310 1.21818 0.96678 0.97623 1.00243 1.21841 0.95562 0.99882 0.98859 1.22481 0.98910 0.98283 0.97863 1.20928 0.98251 0.85877 0.90376 0.91440 1.42323 1.24710 1.07625 1.61727 1.19129 1.01235 0.89300 1.27369 0.91258 1.24719 0.97357 0.98080 1.00475 1.69643 1.21294 1.28504 1.38550 0.86298 0.79540 0.83073 0.77447 1.21251 1.21698 1.21265 1.22127 0.96162 0.84967 0.99875 0.92657 0.92713 0.92390 0.91779 0.91248 0.90452 0.91379 0.92223 0.89189 0.91511 0.91558 0.91071 0.90481 0.92819 0.93471 0.91939 0.91538 0.92927 0.78316 0.93412 0.89996 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 37.15 0.36 -1.02 16 2 C -0.10 -1.15 4.75 -26.74 -0.13 -1.28 16 3 C -0.11 -1.37 1.86 -91.77 -0.17 -1.54 16 4 H 0.09 1.07 6.91 -51.93 -0.36 0.71 16 5 C -0.16 -1.75 7.59 37.16 0.28 -1.47 16 6 C 0.52 7.67 5.37 -10.99 -0.06 7.61 16 7 O -0.55 -9.55 15.09 5.56 0.08 -9.47 16 8 N -0.60 -8.63 1.68 -174.36 -0.29 -8.93 16 9 C 0.11 1.60 5.17 -4.13 -0.02 1.58 16 10 C -0.13 -1.79 5.56 -26.65 -0.15 -1.94 16 11 C -0.13 -1.75 5.49 -26.60 -0.15 -1.89 16 12 C -0.12 -1.77 5.07 -26.52 -0.13 -1.90 16 13 C -0.14 -2.25 4.87 -26.29 -0.13 -2.38 16 14 C 0.16 2.78 2.29 -67.76 -0.16 2.63 16 15 H 0.07 1.24 3.29 -51.93 -0.17 1.07 16 16 N -0.72 -16.64 5.12 -53.26 -0.27 -16.92 16 17 C -0.24 -6.24 9.90 -15.06 -0.15 -6.39 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 21 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.09 1.42 4.92 -4.44 -0.02 1.39 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 6.70 -51.93 -0.35 0.14 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.08 0.95 3.04 -51.93 -0.16 0.80 16 32 H 0.07 0.66 6.86 -51.93 -0.36 0.30 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.28 6.07 -51.93 -0.32 0.97 16 35 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.06 6.39 -51.93 -0.33 0.73 16 38 H 0.08 1.18 5.47 -51.93 -0.28 0.89 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.89 3.42 -51.93 -0.18 0.71 16 42 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 43 H 0.05 0.85 6.29 -51.93 -0.33 0.52 16 44 H 0.38 9.41 7.80 -40.82 -0.32 9.09 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.08 1.16 4.50 -51.93 -0.23 0.92 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -29.10 336.08 -8.00 -37.10 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.56 Total: 9.73 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.72 Total: -6.97 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.16 Total: -52.10 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.10 -8.00 -37.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088266634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.836 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds