Wall clock time and date at job start Tue Mar 31 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46903 * 2 1 4 4 H 1.09003 * 109.46937 * 54.99962 * 3 2 1 5 5 C 1.52997 * 109.47023 * 294.99809 * 3 2 1 6 6 C 1.50701 * 109.46792 * 174.99728 * 3 2 1 7 7 O 1.21277 * 120.00302 * 15.77460 * 6 3 2 8 8 N 1.34781 * 119.99571 * 195.76593 * 6 3 2 9 9 C 1.47131 * 120.18582 * 3.19042 * 8 6 3 10 10 C 1.53629 * 107.51933 * 107.87742 * 9 8 6 11 11 C 1.53489 * 108.46202 * 69.77690 * 10 9 8 12 12 C 1.52469 * 109.14619 * 245.78546 * 11 10 9 13 13 C 1.53112 * 109.67292 * 43.93166 * 12 11 10 14 14 C 1.53430 * 109.35065 * 77.03382 * 13 12 11 15 15 H 1.09011 * 109.63404 * 47.55409 * 14 13 12 16 16 N 1.46503 * 109.63633 * 167.94405 * 14 13 12 17 17 C 1.36934 * 119.99944 * 314.54124 * 16 14 13 18 18 H 1.07998 * 120.00256 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99851 * 179.71541 * 17 16 14 20 20 N 1.31623 * 119.99886 * 0.27984 * 19 17 16 21 21 Si 1.86799 * 120.00252 * 180.27352 * 19 17 16 22 22 H 1.48498 * 109.47231 * 90.00276 * 21 19 17 23 23 H 1.48497 * 109.47693 * 210.00714 * 21 19 17 24 24 H 1.48506 * 109.47100 * 330.00658 * 21 19 17 25 25 C 1.46524 * 120.16516 * 183.29922 * 8 6 3 26 26 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47253 * 300.00121 * 1 2 3 28 28 H 1.09003 * 109.46923 * 60.00257 * 1 2 3 29 29 H 1.08997 * 109.47253 * 239.99879 * 2 1 3 30 30 H 1.09003 * 109.46923 * 119.99742 * 2 1 3 31 31 H 1.08999 * 109.47344 * 179.54304 * 5 3 2 32 32 H 1.08997 * 109.46840 * 299.54446 * 5 3 2 33 33 H 1.09000 * 109.46903 * 59.54442 * 5 3 2 34 34 H 1.09004 * 109.84976 * 348.37570 * 9 8 6 35 35 H 1.08999 * 109.84780 * 227.38087 * 9 8 6 36 36 H 1.08998 * 109.63477 * 310.08304 * 10 9 8 37 37 H 1.08999 * 109.63255 * 189.46642 * 10 9 8 38 38 H 1.08999 * 109.52574 * 125.88358 * 11 10 9 39 39 H 1.08995 * 109.52706 * 5.68769 * 11 10 9 40 40 H 1.09003 * 109.43602 * 283.86419 * 12 11 10 41 41 H 1.09006 * 109.40052 * 163.97315 * 12 11 10 42 42 H 1.08994 * 109.49428 * 317.06608 * 13 12 11 43 43 H 1.09005 * 109.50814 * 197.01003 * 13 12 11 44 44 H 0.96996 * 119.99842 * 134.53128 * 16 14 13 45 45 H 0.96997 * 119.99557 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.37402 * 172.85968 * 25 8 6 47 47 H 1.09003 * 109.59640 * 53.11709 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5419 1.4444 0.1239 7 8 4.1685 0.4265 -0.0813 8 7 4.1887 2.5773 0.4626 9 6 3.4286 3.7963 0.7806 10 6 3.5318 4.0233 2.2965 11 6 4.9731 4.4324 2.6298 12 6 5.6191 3.3421 3.4775 13 6 5.2794 1.9674 2.8953 14 6 6.1500 1.7099 1.6585 15 1 7.1888 1.9501 1.8853 16 7 6.0448 0.3021 1.2668 17 6 6.1280 -0.6809 2.2165 18 1 6.2717 -0.4184 3.2542 19 6 6.0224 -2.0145 1.8461 20 7 5.8478 -2.3344 0.5813 21 14 6.1283 -3.3552 3.1425 22 1 4.7688 -3.6496 3.6623 23 1 6.7041 -4.5835 2.5386 24 1 6.9963 -2.8982 4.2574 25 6 5.6528 2.6020 0.5138 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9915 3.1567 -1.3040 32 1 2.0765 1.5923 -2.1487 33 1 0.5493 2.1180 -1.4008 34 1 2.3845 3.6662 0.4961 35 1 3.8547 4.6472 0.2491 36 1 3.2814 3.1022 2.8227 37 1 2.8472 4.8172 2.5953 38 1 4.9664 5.3701 3.1856 39 1 5.5386 4.5591 1.7066 40 1 5.2435 3.4065 4.4988 41 1 6.7006 3.4781 3.4795 42 1 4.2274 1.9425 2.6112 43 1 5.4725 1.1977 3.6427 44 1 5.9160 0.0664 0.3347 45 1 5.7743 -3.2663 0.3225 46 1 5.9917 3.6247 0.6793 47 1 6.0578 2.2376 -0.4304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088266635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:06 Heat of formation + Delta-G solvation = -0.705983 kcal Electronic energy + Delta-G solvation = -25129.026355 eV Core-core repulsion = 21927.161626 eV Total energy + Delta-G solvation = -3201.864729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19508 -37.50455 -35.25008 -34.36460 -33.44791 -31.75021 -29.64350 -29.25446 -27.09572 -26.16444 -24.96017 -23.43419 -22.86045 -21.29813 -20.27260 -19.25800 -17.84221 -16.92854 -16.42006 -15.71971 -15.44184 -15.01452 -14.54691 -14.14379 -13.94038 -13.83729 -13.45502 -13.13798 -13.09884 -12.55993 -12.44474 -12.05919 -11.99751 -11.86524 -11.61472 -11.44200 -11.38459 -11.12425 -10.84029 -10.76732 -10.64071 -10.58307 -10.48106 -10.33322 -10.24469 -10.01817 -9.90241 -9.57833 -9.19773 -8.60304 -8.53699 -7.91142 -6.47893 -5.39944 -2.65138 3.47188 3.56959 3.57972 3.62284 3.63818 4.81215 4.86064 4.93633 5.01210 5.04475 5.23891 5.26300 5.43992 5.46346 5.53059 5.56433 5.59176 5.64045 5.70044 5.77286 5.82798 5.87663 5.94413 5.97588 6.01808 6.07762 6.11454 6.18091 6.19861 6.25203 6.34501 6.40335 6.43406 6.57130 6.57711 6.79203 6.82737 6.89279 7.03940 7.17594 7.40843 7.95457 8.06982 8.74134 9.11283 9.91097 10.58790 10.99121 11.80877 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.008252 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.039134 B = 3392.187820 C = 4778.440098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.105 4.105 4 H 0.081 0.919 5 C -0.142 4.142 6 C 0.493 3.507 7 O -0.452 6.452 8 N -0.614 5.614 9 C 0.107 3.893 10 C -0.149 4.149 11 C -0.125 4.125 12 C -0.119 4.119 13 C -0.137 4.137 14 C 0.164 3.836 15 H 0.020 0.980 16 N -0.709 5.709 17 C -0.228 4.228 18 H 0.061 0.939 19 C -0.011 4.011 20 N -0.915 5.915 21 Si 0.890 3.110 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.286 1.286 25 C 0.111 3.889 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.400 0.600 45 H 0.246 0.754 46 H 0.078 0.922 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 16.118 -0.843 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.127 4.127 4 H 0.099 0.901 5 C -0.200 4.200 6 C 0.278 3.722 7 O -0.320 6.320 8 N -0.351 5.351 9 C -0.016 4.016 10 C -0.187 4.187 11 C -0.162 4.162 12 C -0.157 4.157 13 C -0.176 4.176 14 C 0.054 3.946 15 H 0.038 0.962 16 N -0.359 5.359 17 C -0.360 4.360 18 H 0.079 0.921 19 C -0.207 4.207 20 N -0.563 5.563 21 Si 0.723 3.277 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.212 1.212 25 C -0.012 4.012 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.243 0.757 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.833 15.392 -0.892 17.769 hybrid contribution -0.037 -0.745 0.751 1.058 sum -8.870 14.648 -0.141 17.125 Atomic orbital electron populations 1.21831 0.96363 1.01456 1.01073 1.21314 0.94278 0.94457 1.04251 1.21274 0.93471 0.98781 0.99165 0.90076 1.21824 1.01462 1.00002 0.96671 1.20577 0.89578 0.83356 0.78668 1.90852 1.66712 1.29994 1.44485 1.48001 1.06158 1.10500 1.70441 1.21972 0.96843 0.87700 0.95112 1.22511 0.97239 1.02159 0.96795 1.21868 0.95906 0.97956 1.00494 1.21540 0.99979 0.95999 0.98203 1.22398 1.01574 0.94405 0.99190 1.20741 0.94938 0.87271 0.91698 0.96250 1.42953 1.86216 0.97731 1.08997 1.19108 1.40722 0.86597 0.89590 0.92075 1.24624 1.03882 0.96709 0.95529 1.69742 1.56747 1.15788 1.14056 0.86444 0.77239 0.82858 0.81203 1.22334 1.22156 1.21249 1.22003 0.79637 0.99754 0.99807 0.92796 0.93213 0.92928 0.90991 0.90952 0.92531 0.92115 0.91875 0.89988 0.91547 0.89936 0.92048 0.93001 0.91201 0.93235 0.92530 0.90998 0.91894 0.75748 0.94350 0.90357 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 37.16 0.36 -1.48 16 2 C -0.11 -1.69 4.74 -26.73 -0.13 -1.82 16 3 C -0.11 -1.52 1.85 -91.77 -0.17 -1.69 16 4 H 0.08 1.04 6.98 -51.93 -0.36 0.68 16 5 C -0.14 -1.64 8.63 37.16 0.32 -1.32 16 6 C 0.49 9.09 6.09 -10.98 -0.07 9.02 16 7 O -0.45 -10.97 11.84 5.56 0.07 -10.90 16 8 N -0.61 -9.54 1.72 -172.52 -0.30 -9.84 16 9 C 0.11 1.20 5.25 -3.37 -0.02 1.19 16 10 C -0.15 -1.68 5.60 -26.15 -0.15 -1.82 16 11 C -0.13 -1.46 5.48 -26.75 -0.15 -1.61 16 12 C -0.12 -1.72 5.67 -26.94 -0.15 -1.87 16 13 C -0.14 -2.57 4.70 -26.45 -0.12 -2.70 16 14 C 0.16 3.41 3.01 -67.50 -0.20 3.21 16 15 H 0.02 0.43 7.89 -51.92 -0.41 0.02 16 16 N -0.71 -18.85 3.86 -53.00 -0.20 -19.05 16 17 C -0.23 -6.68 9.24 -15.06 -0.14 -6.82 16 18 H 0.06 1.76 6.33 -52.49 -0.33 1.42 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.91 -29.37 13.06 55.49 0.72 -28.65 16 21 Si 0.89 23.74 29.55 -169.99 -5.02 18.71 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 23 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 C 0.11 1.89 4.91 -3.82 -0.02 1.87 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 29 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.06 0.57 6.53 -51.93 -0.34 0.23 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.61 6.54 -51.93 -0.34 0.27 16 34 H 0.08 0.81 4.60 -51.93 -0.24 0.57 16 35 H 0.07 0.64 7.97 -51.93 -0.41 0.22 16 36 H 0.08 1.13 5.45 -51.93 -0.28 0.85 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.81 4.49 -51.93 -0.23 0.58 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.81 7.85 -51.93 -0.41 0.41 16 42 H 0.07 1.38 3.68 -51.93 -0.19 1.18 16 43 H 0.06 1.38 6.17 -51.93 -0.32 1.06 16 44 H 0.40 11.62 5.08 -40.82 -0.21 11.41 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.08 1.08 5.08 -51.93 -0.26 0.82 16 47 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -33.88 334.34 -8.04 -41.92 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.62 Total: 9.05 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.73 Total: -6.28 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.22 Total: -57.54 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.02 Total: 18.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.88 -8.04 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088266635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.212 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds