Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46903 * 2 1 4 4 H 1.09003 * 109.46937 * 54.99962 * 3 2 1 5 5 C 1.52997 * 109.47023 * 294.99809 * 3 2 1 6 6 C 1.50701 * 109.46792 * 174.99728 * 3 2 1 7 7 O 1.21277 * 120.00302 * 15.77460 * 6 3 2 8 8 N 1.34781 * 119.99571 * 195.76593 * 6 3 2 9 9 C 1.47131 * 120.18582 * 3.19042 * 8 6 3 10 10 C 1.53629 * 107.51933 * 107.87742 * 9 8 6 11 11 C 1.53489 * 108.46202 * 69.77690 * 10 9 8 12 12 C 1.52469 * 109.14619 * 245.78546 * 11 10 9 13 13 C 1.53112 * 109.67292 * 43.93166 * 12 11 10 14 14 C 1.53430 * 109.35065 * 77.03382 * 13 12 11 15 15 H 1.09011 * 109.63404 * 47.55409 * 14 13 12 16 16 N 1.46503 * 109.63633 * 167.94405 * 14 13 12 17 17 C 1.36934 * 119.99944 * 314.54124 * 16 14 13 18 18 H 1.07998 * 120.00256 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99851 * 179.71541 * 17 16 14 20 20 N 1.31623 * 119.99886 * 0.27984 * 19 17 16 21 21 Si 1.86799 * 120.00252 * 180.27352 * 19 17 16 22 22 H 1.48498 * 109.47231 * 90.00276 * 21 19 17 23 23 H 1.48497 * 109.47693 * 210.00714 * 21 19 17 24 24 H 1.48506 * 109.47100 * 330.00658 * 21 19 17 25 25 C 1.46524 * 120.16516 * 183.29922 * 8 6 3 26 26 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47253 * 300.00121 * 1 2 3 28 28 H 1.09003 * 109.46923 * 60.00257 * 1 2 3 29 29 H 1.08997 * 109.47253 * 239.99879 * 2 1 3 30 30 H 1.09003 * 109.46923 * 119.99742 * 2 1 3 31 31 H 1.08999 * 109.47344 * 179.54304 * 5 3 2 32 32 H 1.08997 * 109.46840 * 299.54446 * 5 3 2 33 33 H 1.09000 * 109.46903 * 59.54442 * 5 3 2 34 34 H 1.09004 * 109.84976 * 348.37570 * 9 8 6 35 35 H 1.08999 * 109.84780 * 227.38087 * 9 8 6 36 36 H 1.08998 * 109.63477 * 310.08304 * 10 9 8 37 37 H 1.08999 * 109.63255 * 189.46642 * 10 9 8 38 38 H 1.08999 * 109.52574 * 125.88358 * 11 10 9 39 39 H 1.08995 * 109.52706 * 5.68769 * 11 10 9 40 40 H 1.09003 * 109.43602 * 283.86419 * 12 11 10 41 41 H 1.09006 * 109.40052 * 163.97315 * 12 11 10 42 42 H 1.08994 * 109.49428 * 317.06608 * 13 12 11 43 43 H 1.09005 * 109.50814 * 197.01003 * 13 12 11 44 44 H 0.96996 * 119.99842 * 134.53128 * 16 14 13 45 45 H 0.96997 * 119.99557 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.37402 * 172.85968 * 25 8 6 47 47 H 1.09003 * 109.59640 * 53.11709 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5419 1.4444 0.1239 7 8 4.1685 0.4265 -0.0813 8 7 4.1887 2.5773 0.4626 9 6 3.4286 3.7963 0.7806 10 6 3.5318 4.0233 2.2965 11 6 4.9731 4.4324 2.6298 12 6 5.6191 3.3421 3.4775 13 6 5.2794 1.9674 2.8953 14 6 6.1500 1.7099 1.6585 15 1 7.1888 1.9501 1.8853 16 7 6.0448 0.3021 1.2668 17 6 6.1280 -0.6809 2.2165 18 1 6.2717 -0.4184 3.2542 19 6 6.0224 -2.0145 1.8461 20 7 5.8478 -2.3344 0.5813 21 14 6.1283 -3.3552 3.1425 22 1 4.7688 -3.6496 3.6623 23 1 6.7041 -4.5835 2.5386 24 1 6.9963 -2.8982 4.2574 25 6 5.6528 2.6020 0.5138 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9915 3.1567 -1.3040 32 1 2.0765 1.5923 -2.1487 33 1 0.5493 2.1180 -1.4008 34 1 2.3845 3.6662 0.4961 35 1 3.8547 4.6472 0.2491 36 1 3.2814 3.1022 2.8227 37 1 2.8472 4.8172 2.5953 38 1 4.9664 5.3701 3.1856 39 1 5.5386 4.5591 1.7066 40 1 5.2435 3.4065 4.4988 41 1 6.7006 3.4781 3.4795 42 1 4.2274 1.9425 2.6112 43 1 5.4725 1.1977 3.6427 44 1 5.9160 0.0664 0.3347 45 1 5.7743 -3.2663 0.3225 46 1 5.9917 3.6247 0.6793 47 1 6.0578 2.2376 -0.4304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088266635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = -22.332499 kcal Electronic energy + Delta-G solvation = -25129.964151 eV Core-core repulsion = 21927.161626 eV Total energy + Delta-G solvation = -3202.802525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.52809 -38.85522 -36.70094 -35.91425 -34.80101 -33.62612 -31.00956 -30.74130 -28.51568 -27.48751 -26.14225 -25.37053 -24.06972 -22.62936 -21.50194 -20.64711 -19.37452 -18.75197 -17.72082 -17.19998 -16.80824 -16.59441 -15.90950 -15.79915 -15.27807 -15.13752 -14.93088 -14.63332 -14.22129 -14.07882 -13.75111 -13.40025 -13.19215 -13.08373 -12.94280 -12.84236 -12.80258 -12.52784 -12.48303 -12.38205 -12.26501 -12.06543 -11.79492 -11.65564 -11.62240 -11.54194 -11.24699 -11.12280 -10.87378 -10.73471 -10.06229 -9.30563 -8.64129 -7.72943 -4.96340 1.39457 1.41965 1.49608 2.10444 2.32205 2.61848 3.53526 3.71804 3.85437 3.92387 4.04873 4.08189 4.14739 4.22311 4.31170 4.34022 4.45402 4.54323 4.56616 4.60107 4.64801 4.73466 4.75941 4.80304 4.86533 4.93194 4.99156 5.06582 5.08762 5.13880 5.17198 5.21290 5.25521 5.27868 5.43685 5.45155 5.50829 5.54119 5.60489 5.63950 5.76453 5.96322 6.44174 6.77906 7.49911 7.75004 8.46830 8.73674 9.48854 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.008252 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.039134 B = 3392.187820 C = 4778.440098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.097 4.097 4 H 0.107 0.893 5 C -0.134 4.134 6 C 0.481 3.519 7 O -0.523 6.523 8 N -0.607 5.607 9 C 0.100 3.900 10 C -0.145 4.145 11 C -0.120 4.120 12 C -0.112 4.112 13 C -0.126 4.126 14 C 0.152 3.848 15 H 0.014 0.986 16 N -0.721 5.721 17 C -0.220 4.220 18 H 0.061 0.939 19 C -0.079 4.079 20 N -0.952 5.952 21 Si 0.954 3.046 22 H -0.296 1.296 23 H -0.298 1.298 24 H -0.273 1.273 25 C 0.119 3.881 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.020 0.980 44 H 0.386 0.614 45 H 0.238 0.762 46 H 0.122 0.878 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.114 20.149 -0.056 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C -0.118 4.118 4 H 0.125 0.875 5 C -0.191 4.191 6 C 0.269 3.731 7 O -0.397 6.397 8 N -0.342 5.342 9 C -0.021 4.021 10 C -0.183 4.183 11 C -0.157 4.157 12 C -0.150 4.150 13 C -0.165 4.165 14 C 0.043 3.957 15 H 0.031 0.969 16 N -0.369 5.369 17 C -0.353 4.353 18 H 0.079 0.921 19 C -0.271 4.271 20 N -0.604 5.604 21 Si 0.785 3.215 22 H -0.224 1.224 23 H -0.225 1.225 24 H -0.198 1.198 25 C -0.004 4.004 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.227 0.773 45 H 0.047 0.953 46 H 0.140 0.860 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.744 19.525 -0.057 22.286 hybrid contribution 0.584 -1.886 0.549 2.049 sum -10.160 17.639 0.491 20.362 Atomic orbital electron populations 1.21765 0.92737 1.02028 1.03142 1.21230 0.97304 0.95216 1.00328 1.21278 0.90486 0.98027 1.02013 0.87456 1.21809 1.03204 1.00428 0.93685 1.21430 0.91312 0.83080 0.77327 1.90830 1.68321 1.32714 1.47820 1.48087 1.05676 1.11449 1.69016 1.22392 0.97683 0.86339 0.95674 1.22461 0.97693 1.02002 0.96174 1.21852 0.95773 0.97739 1.00311 1.21469 1.00428 0.94028 0.99098 1.22245 1.00946 0.96246 0.97023 1.21048 0.95151 0.85160 0.94347 0.96855 1.43172 1.85921 0.99872 1.07944 1.19449 1.38292 0.87526 0.90072 0.92074 1.25374 1.05309 0.99011 0.97443 1.69952 1.59124 1.15306 1.16018 0.85407 0.77084 0.79908 0.79087 1.22413 1.22470 1.19823 1.21860 0.80884 1.00832 0.96838 0.93167 0.91431 0.90332 0.94183 0.95802 0.90141 0.94198 0.88968 0.87896 0.88383 0.92742 0.88474 0.90093 0.90840 0.92312 0.92520 0.91251 0.96079 0.77332 0.95342 0.86028 0.94681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.67 71.98 0.70 -2.52 16 2 C -0.10 -3.44 4.74 30.60 0.14 -3.29 16 3 C -0.10 -2.69 1.85 -11.54 -0.02 -2.71 16 4 H 0.11 2.42 6.98 -2.39 -0.02 2.41 16 5 C -0.13 -2.70 8.63 71.98 0.62 -2.08 16 6 C 0.48 18.03 6.09 87.66 0.53 18.56 16 7 O -0.52 -27.13 11.84 -3.02 -0.04 -27.17 16 8 N -0.61 -17.98 1.72 -818.12 -1.41 -19.39 16 9 C 0.10 1.79 5.25 86.47 0.45 2.24 16 10 C -0.15 -2.59 5.60 30.97 0.17 -2.41 16 11 C -0.12 -2.23 5.48 30.58 0.17 -2.07 16 12 C -0.11 -2.98 5.67 30.46 0.17 -2.81 16 13 C -0.13 -4.77 4.70 30.78 0.14 -4.62 16 14 C 0.15 6.46 3.01 45.27 0.14 6.60 16 15 H 0.01 0.61 7.89 -2.38 -0.02 0.59 16 16 N -0.72 -40.44 3.86 -321.60 -1.24 -41.69 16 17 C -0.22 -13.53 9.24 84.03 0.78 -12.76 16 18 H 0.06 3.67 6.33 -2.91 -0.02 3.65 16 19 C -0.08 -5.04 5.50 84.86 0.47 -4.58 16 20 N -0.95 -64.84 13.06 21.65 0.28 -64.56 16 21 Si 0.95 51.12 29.55 68.60 2.03 53.15 16 22 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 23 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 24 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 25 C 0.12 3.98 4.91 86.51 0.42 4.40 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.41 6.56 -2.39 -0.02 1.40 16 29 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.25 6.53 -2.39 -0.02 1.24 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.36 6.54 -2.39 -0.02 1.34 16 34 H 0.10 1.45 4.60 -2.38 -0.01 1.44 16 35 H 0.10 1.25 7.97 -2.39 -0.02 1.23 16 36 H 0.05 1.33 5.45 -2.39 -0.01 1.31 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.32 4.49 -2.39 -0.01 1.31 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.51 7.85 -2.38 -0.02 1.49 16 42 H 0.07 2.66 3.68 -2.39 -0.01 2.65 16 43 H 0.02 0.94 6.17 -2.38 -0.01 0.93 16 44 H 0.39 23.98 5.08 -92.71 -0.47 23.51 16 45 H 0.24 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.12 2.98 5.08 -2.39 -0.01 2.96 16 47 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 Total: -1.00 -82.62 334.34 5.01 -77.61 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.50 Total: 30.08 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.89 Total: -8.04 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -2.37 Total: -125.64 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.03 Total: 53.15 kcal Total: -82.62 5.01 -77.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088266635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.282 kcal (2) G-P(sol) polarization free energy of solvation -82.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds