Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46990 * 2 1 4 4 H 1.08997 * 109.47367 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.46883 * 295.00174 * 3 2 1 6 6 C 1.50699 * 109.47210 * 175.00300 * 3 2 1 7 7 O 1.21284 * 119.99893 * 9.56169 * 6 3 2 8 8 N 1.34776 * 120.00149 * 189.57026 * 6 3 2 9 9 C 1.46966 * 120.36328 * 183.34149 * 8 6 3 10 10 C 1.51796 * 109.40116 * 291.89669 * 9 8 6 11 11 C 1.53801 * 109.05940 * 287.19472 * 10 9 8 12 12 C 1.52451 * 109.40206 * 77.78475 * 11 10 9 13 13 C 1.53954 * 110.73259 * 246.27186 * 12 11 10 14 14 C 1.52881 * 109.72626 * 44.37057 * 13 12 11 15 15 H 1.08996 * 109.49996 * 312.90895 * 14 13 12 16 16 N 1.46499 * 109.48129 * 192.86823 * 14 13 12 17 17 C 1.36945 * 120.00261 * 85.08992 * 16 14 13 18 18 H 1.08000 * 119.99287 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00312 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99964 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99610 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47151 * 90.00486 * 21 19 17 23 23 H 1.48506 * 109.46962 * 209.99848 * 21 19 17 24 24 H 1.48491 * 109.47316 * 329.99862 * 21 19 17 25 25 C 1.45333 * 120.36516 * 3.61567 * 8 6 3 26 26 H 1.09001 * 109.46716 * 299.99980 * 1 2 3 27 27 H 1.08999 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47252 * 60.00034 * 1 2 3 29 29 H 1.08994 * 109.47252 * 119.99966 * 2 1 3 30 30 H 1.08995 * 109.47091 * 240.00217 * 2 1 3 31 31 H 1.09006 * 109.47063 * 306.24188 * 5 3 2 32 32 H 1.08994 * 109.47666 * 66.24696 * 5 3 2 33 33 H 1.09002 * 109.46656 * 186.25177 * 5 3 2 34 34 H 1.09000 * 109.52907 * 51.52739 * 9 8 6 35 35 H 1.08997 * 109.53048 * 171.74691 * 9 8 6 36 36 H 1.08999 * 109.61295 * 167.29374 * 10 9 8 37 37 H 1.09008 * 109.53324 * 47.04322 * 10 9 8 38 38 H 1.09002 * 109.47994 * 317.80777 * 11 10 9 39 39 H 1.08994 * 109.48505 * 197.76517 * 11 10 9 40 40 H 1.09001 * 109.21875 * 125.95459 * 12 11 10 41 41 H 1.08994 * 109.19064 * 6.57831 * 12 11 10 42 42 H 1.09001 * 109.43053 * 284.28987 * 13 12 11 43 43 H 1.08998 * 109.42749 * 164.44489 * 13 12 11 44 44 H 0.97006 * 120.00144 * 265.08403 * 16 14 13 45 45 H 0.97001 * 119.99657 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.67527 * 256.39271 * 25 8 6 47 47 H 1.08998 * 109.67641 * 16.93024 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4444 0.1238 7 8 4.1594 0.4047 0.0298 8 7 4.1989 2.6013 0.3390 9 6 5.6676 2.6235 0.3880 10 6 6.1421 1.8840 1.6258 11 6 5.8490 2.7431 2.8673 12 6 4.3698 2.6353 3.2201 13 6 3.6615 3.9873 3.0186 14 6 4.1035 4.6090 1.6937 15 1 5.1890 4.5553 1.6108 16 7 3.6784 6.0101 1.6456 17 6 4.4603 6.9827 2.2097 18 1 5.3901 6.7166 2.6904 19 6 4.0578 8.3104 2.1636 20 7 4.8090 9.2450 2.7062 21 14 2.4499 8.7704 1.3315 22 1 1.3482 8.7298 2.3264 23 1 2.5581 10.1404 0.7686 24 1 2.1651 7.8071 0.2379 25 6 3.4627 3.8395 0.5311 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.9756 1.5270 -2.1517 32 1 0.5503 2.2246 -1.3454 33 1 2.0914 3.1153 -1.3565 34 1 6.0692 2.1325 -0.4984 35 1 6.0154 3.6559 0.4231 36 1 7.2142 1.7010 1.5542 37 1 5.6141 0.9338 1.7074 38 1 6.0976 3.7833 2.6566 39 1 6.4493 2.3882 3.7050 40 1 4.2707 2.3300 4.2618 41 1 3.9026 1.8865 2.5806 42 1 3.9203 4.6579 3.8380 43 1 2.5826 3.8328 3.0045 44 1 2.8431 6.2490 1.2140 45 1 4.5278 10.1728 2.6737 46 1 3.5110 4.4399 -0.3773 47 1 2.4228 3.6152 0.7684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088266636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = -32.704134 kcal Electronic energy + Delta-G solvation = -24416.811616 eV Core-core repulsion = 21213.559343 eV Total energy + Delta-G solvation = -3203.252273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64511 -37.90622 -35.64791 -34.67397 -34.05528 -32.22495 -30.62231 -29.69550 -27.54413 -26.18025 -25.31082 -23.52903 -22.67557 -21.67704 -20.92773 -19.23282 -18.61958 -17.80456 -16.89149 -15.97985 -15.93150 -15.09197 -14.83389 -14.41884 -14.15740 -13.96204 -13.70093 -13.54658 -13.36512 -12.95272 -12.72082 -12.59488 -12.42920 -12.26781 -11.88474 -11.79388 -11.64621 -11.48140 -11.11253 -11.09395 -10.96107 -10.81143 -10.79539 -10.69096 -10.37167 -10.34292 -10.20747 -9.96395 -9.65172 -9.34899 -8.97207 -8.33688 -7.34099 -5.83139 -3.19911 2.75043 3.12776 3.31534 3.34354 3.41059 4.48515 4.52965 4.66000 4.81649 4.91237 5.02965 5.17650 5.20848 5.24685 5.31457 5.35231 5.35981 5.36917 5.48516 5.55929 5.61066 5.64702 5.75511 5.76156 5.78825 5.85051 5.86840 5.90212 5.96441 6.07764 6.14090 6.16477 6.20720 6.23992 6.29267 6.43237 6.53382 6.59042 6.70608 6.86928 6.96031 7.59300 7.91685 8.30654 8.35403 9.12802 9.85165 10.03664 11.34932 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.005669 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.525705 B = 4937.762366 C = 5902.256273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.114 4.114 4 H 0.095 0.905 5 C -0.147 4.147 6 C 0.519 3.481 7 O -0.547 6.547 8 N -0.596 5.596 9 C 0.115 3.885 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.134 4.134 14 C 0.159 3.841 15 H 0.077 0.923 16 N -0.747 5.747 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.094 3.906 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.360 0.640 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 -16.331 -5.377 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.135 4.135 4 H 0.113 0.887 5 C -0.204 4.204 6 C 0.308 3.692 7 O -0.425 6.425 8 N -0.328 5.328 9 C -0.007 4.007 10 C -0.175 4.175 11 C -0.164 4.164 12 C -0.154 4.154 13 C -0.175 4.175 14 C 0.049 3.951 15 H 0.094 0.906 16 N -0.390 5.390 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.579 5.579 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.030 4.030 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.193 0.807 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.980 -16.714 -5.325 18.235 hybrid contribution -1.214 0.677 -0.394 1.445 sum -6.194 -16.037 -5.719 18.117 Atomic orbital electron populations 1.21838 0.95627 1.01678 1.01941 1.21324 0.95207 0.94317 1.03203 1.21381 0.92443 0.99060 1.00627 0.88695 1.21862 1.02096 1.00844 0.95639 1.20563 0.89879 0.82957 0.75835 1.90644 1.69481 1.31380 1.50965 1.47735 1.06900 1.07889 1.70315 1.21437 0.79261 1.01823 0.98212 1.21952 1.00888 0.99876 0.94780 1.21830 0.96499 1.01010 0.97106 1.21688 0.95548 0.98054 1.00075 1.22408 0.98851 0.95524 1.00681 1.20934 0.98948 0.84012 0.91196 0.90566 1.42699 1.24949 1.01746 1.69559 1.19011 1.02837 0.86162 1.29343 0.89174 1.24659 0.98074 0.95641 1.00514 1.69695 1.38351 1.00345 1.49541 0.86574 0.84823 0.77671 0.79554 1.21105 1.21767 1.20310 1.22115 0.96260 0.84983 0.99679 0.92693 0.92643 0.92463 0.91522 0.91327 0.92173 0.91360 0.91660 0.91623 0.89110 0.91529 0.90536 0.90389 0.92685 0.93308 0.92697 0.91091 0.93271 0.80730 0.92997 0.91340 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 37.16 0.36 -0.93 16 2 C -0.10 -1.08 4.70 -26.73 -0.13 -1.21 16 3 C -0.11 -1.28 1.88 -91.77 -0.17 -1.45 16 4 H 0.10 1.02 6.83 -51.93 -0.35 0.67 16 5 C -0.15 -1.45 8.52 37.16 0.32 -1.14 16 6 C 0.52 7.26 5.48 -10.99 -0.06 7.20 16 7 O -0.55 -9.11 14.64 5.55 0.08 -9.03 16 8 N -0.60 -8.17 1.70 -174.69 -0.30 -8.47 16 9 C 0.11 1.56 5.15 -4.40 -0.02 1.54 16 10 C -0.14 -1.82 5.54 -26.93 -0.15 -1.97 16 11 C -0.13 -1.78 5.49 -26.60 -0.15 -1.93 16 12 C -0.12 -1.67 5.40 -26.52 -0.14 -1.81 16 13 C -0.13 -2.21 5.33 -26.30 -0.14 -2.35 16 14 C 0.16 2.74 2.29 -67.77 -0.16 2.59 16 15 H 0.08 1.38 3.29 -51.93 -0.17 1.21 16 16 N -0.75 -16.18 4.93 -53.26 -0.26 -16.44 16 17 C -0.24 -6.46 10.39 -15.06 -0.16 -6.61 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -28.34 13.97 55.49 0.78 -27.57 16 21 Si 0.88 21.13 27.73 -169.99 -4.71 16.42 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 25 C 0.09 1.33 3.98 -4.44 -0.02 1.32 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 6.71 -51.93 -0.35 0.09 16 29 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.57 6.88 -51.93 -0.36 0.21 16 33 H 0.06 0.68 6.18 -51.93 -0.32 0.36 16 34 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.09 1.26 6.06 -51.93 -0.31 0.94 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.14 6.07 -51.92 -0.32 0.83 16 38 H 0.08 1.22 5.47 -51.93 -0.28 0.93 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.80 5.37 -51.93 -0.28 0.52 16 42 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 43 H 0.05 0.77 7.87 -51.93 -0.41 0.36 16 44 H 0.36 7.64 5.66 -40.82 -0.23 7.41 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.07 0.99 7.83 -51.93 -0.41 0.59 16 47 H 0.08 1.02 5.25 -51.93 -0.27 0.75 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -30.19 340.18 -7.88 -38.07 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.88 Total: 8.55 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.71 Total: -6.66 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.22 Total: -52.48 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.19 -7.88 -38.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088266636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.363 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds