Wall clock time and date at job start Tue Mar 31 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46990 * 2 1 4 4 H 1.08997 * 109.47367 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.46883 * 295.00174 * 3 2 1 6 6 C 1.50699 * 109.47210 * 175.00300 * 3 2 1 7 7 O 1.21284 * 119.99893 * 9.56169 * 6 3 2 8 8 N 1.34776 * 120.00149 * 189.57026 * 6 3 2 9 9 C 1.46966 * 120.36328 * 183.34149 * 8 6 3 10 10 C 1.51796 * 109.40116 * 291.89669 * 9 8 6 11 11 C 1.53801 * 109.05940 * 287.19472 * 10 9 8 12 12 C 1.52451 * 109.40206 * 77.78475 * 11 10 9 13 13 C 1.53954 * 110.73259 * 246.27186 * 12 11 10 14 14 C 1.52881 * 109.72626 * 44.37057 * 13 12 11 15 15 H 1.08996 * 109.49996 * 312.90895 * 14 13 12 16 16 N 1.46499 * 109.48129 * 192.86823 * 14 13 12 17 17 C 1.36945 * 120.00261 * 85.08992 * 16 14 13 18 18 H 1.08000 * 119.99287 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00312 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99964 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99610 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47151 * 90.00486 * 21 19 17 23 23 H 1.48506 * 109.46962 * 209.99848 * 21 19 17 24 24 H 1.48491 * 109.47316 * 329.99862 * 21 19 17 25 25 C 1.45333 * 120.36516 * 3.61567 * 8 6 3 26 26 H 1.09001 * 109.46716 * 299.99980 * 1 2 3 27 27 H 1.08999 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47252 * 60.00034 * 1 2 3 29 29 H 1.08994 * 109.47252 * 119.99966 * 2 1 3 30 30 H 1.08995 * 109.47091 * 240.00217 * 2 1 3 31 31 H 1.09006 * 109.47063 * 306.24188 * 5 3 2 32 32 H 1.08994 * 109.47666 * 66.24696 * 5 3 2 33 33 H 1.09002 * 109.46656 * 186.25177 * 5 3 2 34 34 H 1.09000 * 109.52907 * 51.52739 * 9 8 6 35 35 H 1.08997 * 109.53048 * 171.74691 * 9 8 6 36 36 H 1.08999 * 109.61295 * 167.29374 * 10 9 8 37 37 H 1.09008 * 109.53324 * 47.04322 * 10 9 8 38 38 H 1.09002 * 109.47994 * 317.80777 * 11 10 9 39 39 H 1.08994 * 109.48505 * 197.76517 * 11 10 9 40 40 H 1.09001 * 109.21875 * 125.95459 * 12 11 10 41 41 H 1.08994 * 109.19064 * 6.57831 * 12 11 10 42 42 H 1.09001 * 109.43053 * 284.28987 * 13 12 11 43 43 H 1.08998 * 109.42749 * 164.44489 * 13 12 11 44 44 H 0.97006 * 120.00144 * 265.08403 * 16 14 13 45 45 H 0.97001 * 119.99657 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.67527 * 256.39271 * 25 8 6 47 47 H 1.08998 * 109.67641 * 16.93024 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4444 0.1238 7 8 4.1594 0.4047 0.0298 8 7 4.1989 2.6013 0.3390 9 6 5.6676 2.6235 0.3880 10 6 6.1421 1.8840 1.6258 11 6 5.8490 2.7431 2.8673 12 6 4.3698 2.6353 3.2201 13 6 3.6615 3.9873 3.0186 14 6 4.1035 4.6090 1.6937 15 1 5.1890 4.5553 1.6108 16 7 3.6784 6.0101 1.6456 17 6 4.4603 6.9827 2.2097 18 1 5.3901 6.7166 2.6904 19 6 4.0578 8.3104 2.1636 20 7 4.8090 9.2450 2.7062 21 14 2.4499 8.7704 1.3315 22 1 1.3482 8.7298 2.3264 23 1 2.5581 10.1404 0.7686 24 1 2.1651 7.8071 0.2379 25 6 3.4627 3.8395 0.5311 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.9756 1.5270 -2.1517 32 1 0.5503 2.2246 -1.3454 33 1 2.0914 3.1153 -1.3565 34 1 6.0692 2.1325 -0.4984 35 1 6.0154 3.6559 0.4231 36 1 7.2142 1.7010 1.5542 37 1 5.6141 0.9338 1.7074 38 1 6.0976 3.7833 2.6566 39 1 6.4493 2.3882 3.7050 40 1 4.2707 2.3300 4.2618 41 1 3.9026 1.8865 2.5806 42 1 3.9203 4.6579 3.8380 43 1 2.5826 3.8328 3.0045 44 1 2.8431 6.2490 1.2140 45 1 4.5278 10.1728 2.6737 46 1 3.5110 4.4399 -0.3773 47 1 2.4228 3.6152 0.7684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088266636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:08 Heat of formation + Delta-G solvation = -49.932105 kcal Electronic energy + Delta-G solvation = -24417.558677 eV Core-core repulsion = 21213.559343 eV Total energy + Delta-G solvation = -3203.999334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78459 -39.14743 -36.70936 -36.15408 -35.20754 -33.97617 -32.16650 -30.63445 -28.89385 -27.37038 -26.22770 -25.12025 -23.96389 -23.02956 -21.87764 -20.53829 -20.01025 -19.42210 -18.04339 -17.20458 -17.14951 -16.40188 -16.07392 -15.79092 -15.40032 -15.26800 -14.92402 -14.80190 -14.54476 -14.29315 -14.03184 -13.85896 -13.59347 -13.17868 -13.04767 -12.97852 -12.84361 -12.57322 -12.50018 -12.41694 -12.35451 -12.05596 -11.94420 -11.78138 -11.64590 -11.60725 -11.57406 -11.43374 -11.34655 -10.87041 -10.47419 -9.55653 -9.23270 -7.97693 -5.31680 1.41772 1.45669 1.52845 1.66083 2.02330 2.53063 3.34208 3.41952 3.66755 3.75544 3.86134 3.97596 4.01926 4.03900 4.13949 4.19667 4.31136 4.44637 4.48905 4.53853 4.57976 4.63209 4.65048 4.75157 4.75569 4.82051 4.92108 4.95583 4.98145 5.04624 5.11894 5.13947 5.19226 5.21892 5.28458 5.35821 5.38863 5.46479 5.49734 5.53184 5.68384 5.82617 6.25137 6.47793 7.12185 7.20966 7.86602 8.06326 9.23765 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.005669 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.525705 B = 4937.762366 C = 5902.256273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.112 4.112 4 H 0.106 0.894 5 C -0.144 4.144 6 C 0.517 3.483 7 O -0.575 6.575 8 N -0.594 5.594 9 C 0.112 3.888 10 C -0.127 4.127 11 C -0.125 4.125 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.154 3.846 15 H 0.067 0.933 16 N -0.747 5.747 17 C -0.222 4.222 18 H 0.055 0.945 19 C -0.064 4.064 20 N -0.986 5.986 21 Si 0.952 3.048 22 H -0.281 1.281 23 H -0.302 1.302 24 H -0.242 1.242 25 C 0.105 3.895 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.367 0.633 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 -17.747 -6.606 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.133 4.133 4 H 0.124 0.876 5 C -0.202 4.202 6 C 0.307 3.693 7 O -0.455 6.455 8 N -0.326 5.326 9 C -0.010 4.010 10 C -0.166 4.166 11 C -0.162 4.162 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.046 3.954 15 H 0.085 0.915 16 N -0.390 5.390 17 C -0.353 4.353 18 H 0.073 0.927 19 C -0.255 4.255 20 N -0.637 5.637 21 Si 0.779 3.221 22 H -0.208 1.208 23 H -0.230 1.230 24 H -0.167 1.167 25 C -0.019 4.019 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.200 0.800 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.291 -18.197 -6.573 20.676 hybrid contribution -0.380 1.020 0.041 1.089 sum -7.671 -17.178 -6.532 19.915 Atomic orbital electron populations 1.21808 0.93674 1.02432 1.02685 1.21289 0.96816 0.93622 1.02041 1.21452 0.90120 0.99851 1.01852 0.87611 1.21868 1.03470 1.00269 0.94545 1.21103 0.91072 0.82254 0.74885 1.90635 1.70380 1.32287 1.52220 1.47731 1.06854 1.07822 1.70167 1.21458 0.79539 1.01536 0.98493 1.21860 1.01677 0.98853 0.94176 1.21795 0.96509 1.00008 0.97925 1.21614 0.95478 0.96755 1.00701 1.22269 0.99900 0.95770 0.98733 1.21103 0.98886 0.82306 0.93108 0.91529 1.42624 1.24615 1.02632 1.69137 1.18924 1.01697 0.87198 1.27487 0.92710 1.25471 1.02162 0.95634 1.02233 1.69889 1.40942 1.00581 1.52284 0.85455 0.79998 0.77299 0.79308 1.20768 1.22953 1.16654 1.21948 0.96952 0.84751 0.98246 0.92166 0.92013 0.91412 0.92925 0.92345 0.92481 0.89214 0.91962 0.91319 0.89635 0.90117 0.91668 0.92278 0.91715 0.92495 0.92310 0.94259 0.91842 0.79980 0.93534 0.90940 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.34 16 2 C -0.10 -1.89 4.70 30.60 0.14 -1.74 16 3 C -0.11 -2.19 1.88 -11.54 -0.02 -2.21 16 4 H 0.11 1.87 6.83 -2.39 -0.02 1.85 16 5 C -0.14 -2.36 8.52 71.98 0.61 -1.75 16 6 C 0.52 13.46 5.48 87.66 0.48 13.94 16 7 O -0.58 -18.49 14.64 -3.04 -0.04 -18.53 16 8 N -0.59 -15.19 1.70 -824.98 -1.40 -16.59 16 9 C 0.11 2.93 5.15 85.89 0.44 3.37 16 10 C -0.13 -3.27 5.54 30.47 0.17 -3.10 16 11 C -0.13 -3.42 5.49 30.68 0.17 -3.25 16 12 C -0.11 -2.96 5.40 30.73 0.17 -2.79 16 13 C -0.13 -4.02 5.33 30.88 0.16 -3.86 16 14 C 0.15 5.15 2.29 45.10 0.10 5.25 16 15 H 0.07 2.41 3.29 -2.39 -0.01 2.40 16 16 N -0.75 -31.39 4.93 -322.43 -1.59 -32.98 16 17 C -0.22 -11.90 10.39 84.03 0.87 -11.02 16 18 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 19 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 20 N -0.99 -61.75 13.97 21.65 0.30 -61.44 16 21 Si 0.95 43.08 27.73 68.60 1.90 44.98 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.24 -9.48 6.52 99.48 0.65 -8.83 16 25 C 0.10 2.72 3.98 86.75 0.35 3.07 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.79 6.71 -2.39 -0.02 0.78 16 29 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 30 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.09 1.11 6.88 -2.39 -0.02 1.09 16 33 H 0.06 1.07 6.18 -2.39 -0.01 1.06 16 34 H 0.07 1.76 8.12 -2.39 -0.02 1.75 16 35 H 0.09 2.33 6.06 -2.39 -0.01 2.32 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.87 6.07 -2.38 -0.01 1.85 16 38 H 0.06 1.86 5.47 -2.39 -0.01 1.85 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.60 5.37 -2.39 -0.01 1.59 16 42 H 0.04 1.49 8.11 -2.39 -0.02 1.47 16 43 H 0.06 1.82 7.87 -2.39 -0.02 1.80 16 44 H 0.37 14.50 5.66 -92.70 -0.53 13.98 16 45 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.07 1.88 7.83 -2.39 -0.02 1.86 16 47 H 0.10 2.22 5.25 -2.39 -0.01 2.21 16 Total: -1.00 -66.26 340.18 4.36 -61.91 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.37 Total: 31.24 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 4.81 Total: -8.58 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -2.68 Total: -111.01 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.04 Total: -18.53 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.90 Total: 44.98 kcal Total: -66.26 4.36 -61.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088266636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.974 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds