Wall clock time and date at job start Tue Mar 31 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46832 * 2 1 4 4 C 1.50687 * 109.47541 * 120.00427 * 2 1 3 5 5 O 1.21287 * 120.00333 * 239.99934 * 4 2 1 6 6 N 1.34777 * 120.00167 * 59.99746 * 4 2 1 7 7 C 1.46497 * 120.00172 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.32795 * 32.98930 * 7 6 4 9 9 C 1.52520 * 110.25575 * 270.97799 * 7 6 4 10 10 C 1.46235 * 114.28575 * 151.61322 * 9 7 6 11 11 N 1.50171 * 107.52881 * 58.41117 * 10 9 7 12 12 C 1.36942 * 120.53859 * 109.59922 * 11 10 9 13 13 H 1.08003 * 119.99819 * 320.02345 * 12 11 10 14 14 C 1.38806 * 120.00084 * 140.01963 * 12 11 10 15 15 N 1.31625 * 119.99988 * 156.56253 * 14 12 11 16 16 Si 1.86797 * 120.00264 * 336.56554 * 14 12 11 17 17 H 1.48503 * 109.47272 * 95.56333 * 16 14 12 18 18 H 1.48496 * 109.47286 * 215.56863 * 16 14 12 19 19 H 1.48503 * 109.47200 * 335.56288 * 16 14 12 20 20 C 1.43426 * 118.92305 * 289.59948 * 11 10 9 21 21 C 1.54891 * 116.08316 * 91.56763 * 20 11 10 22 22 C 1.53004 * 109.36340 * 78.83923 * 21 20 11 23 23 C 1.53005 * 109.35961 * 198.42663 * 21 20 11 24 24 C 1.50133 * 110.25039 * 155.00108 * 7 6 4 25 25 H 1.09001 * 109.47605 * 59.99469 * 1 2 3 26 26 H 1.09003 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47447 * 299.99484 * 1 2 3 28 28 H 1.09000 * 109.46953 * 240.00917 * 2 1 3 29 29 H 1.08999 * 109.47253 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47459 * 300.00621 * 3 2 1 31 31 H 1.08998 * 109.47120 * 60.00710 * 3 2 1 32 32 H 0.97002 * 119.99926 * 0.02562 * 6 4 2 33 33 H 1.09005 * 108.52421 * 272.86116 * 9 7 6 34 34 H 1.09003 * 108.51923 * 30.52860 * 9 7 6 35 35 H 1.09005 * 109.84565 * 177.91718 * 10 9 7 36 36 H 1.09001 * 109.84882 * 298.83780 * 10 9 7 37 37 H 0.96995 * 119.99992 * 180.02562 * 15 14 12 38 38 H 1.09006 * 108.16280 * 329.84721 * 20 11 10 39 39 H 1.09013 * 108.15946 * 213.28317 * 20 11 10 40 40 H 1.09003 * 109.46770 * 59.99954 * 22 21 20 41 41 H 1.08996 * 109.47752 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.46854 * 300.00497 * 22 21 20 43 43 H 1.08997 * 109.47006 * 60.00421 * 23 21 20 44 44 H 1.09010 * 109.47074 * 179.97438 * 23 21 20 45 45 H 1.08999 * 109.47326 * 299.99827 * 23 21 20 46 46 H 1.09001 * 109.20581 * 96.31818 * 24 7 6 47 47 H 1.08994 * 109.17302 * 336.97525 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -0.1211 2.0287 6 7 1.7068 -2.0008 1.4435 7 6 2.1957 -2.6916 2.6393 8 1 2.2721 -1.9951 3.4743 9 6 3.5512 -3.3332 2.3614 10 6 4.4082 -3.4625 3.5392 11 7 3.6653 -4.2871 4.5508 12 6 4.0720 -5.5616 4.8436 13 1 4.4141 -6.2140 4.0538 14 6 4.0446 -6.0147 6.1553 15 7 3.9782 -7.3055 6.4044 16 14 4.1018 -4.7929 7.5670 17 1 2.7197 -4.5009 8.0254 18 1 4.8841 -5.3697 8.6896 19 1 4.7470 -3.5364 7.1084 20 6 2.5230 -3.7182 5.2053 21 6 1.1531 -3.9740 4.5292 22 6 0.6771 -5.3884 4.8667 23 6 0.1327 -2.9605 5.0513 24 6 1.2812 -3.8285 2.9930 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.1494 -2.4723 0.8049 33 1 3.3851 -4.3261 1.9432 34 1 4.0744 -2.7296 1.6198 35 1 5.3386 -3.9609 3.2669 36 1 4.6235 -2.4763 3.9503 37 1 3.9587 -7.6221 7.3210 38 1 2.6722 -2.6405 5.2736 39 1 2.4803 -4.1146 6.2199 40 1 0.5745 -5.4891 5.9472 41 1 -0.2871 -5.5703 4.3921 42 1 1.4047 -6.1133 4.5017 43 1 0.4712 -1.9510 4.8180 44 1 -0.8322 -3.1386 4.5762 45 1 0.0320 -3.0696 6.1311 46 1 1.6815 -4.7533 2.5773 47 1 0.2956 -3.6410 2.5671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089319842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:45 Heat of formation + Delta-G solvation = -30.078851 kcal Electronic energy + Delta-G solvation = -24437.748949 eV Core-core repulsion = 21234.610517 eV Total energy + Delta-G solvation = -3203.138432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.15384 -38.53782 -34.91137 -34.53453 -34.30461 -32.18198 -30.57187 -27.85437 -27.22688 -26.64626 -25.61042 -24.21405 -23.29545 -21.37817 -20.06944 -19.84724 -18.40843 -17.10289 -16.46439 -16.07818 -15.38023 -15.02521 -14.81559 -14.15025 -13.95162 -13.87031 -13.56240 -13.17146 -12.99445 -12.68445 -12.51780 -12.46089 -12.15842 -12.07351 -11.88448 -11.81456 -11.48922 -11.35439 -11.29006 -11.21378 -10.86736 -10.66591 -10.49308 -10.38808 -10.29791 -9.90059 -9.78947 -9.65206 -9.54225 -9.38782 -8.75925 -8.40428 -6.68811 -5.98247 -3.39590 2.77341 3.31858 3.36105 3.50509 3.58778 4.57063 4.59046 4.72530 4.79444 4.91021 5.19955 5.23393 5.31327 5.37376 5.39281 5.43398 5.51854 5.64576 5.68779 5.75270 5.76875 5.85560 5.94306 6.07211 6.10463 6.11303 6.18935 6.24904 6.28963 6.36321 6.43336 6.54750 6.58585 6.72637 6.74556 6.78551 6.84139 6.91192 6.98328 7.05666 7.30091 7.68089 8.12442 8.39088 8.39556 9.05527 9.75440 10.21601 11.17090 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.005115 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.397450 B = 5472.644515 C = 5782.649517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.132 4.132 4 C 0.512 3.488 5 O -0.539 6.539 6 N -0.722 5.722 7 C 0.147 3.853 8 H 0.094 0.906 9 C -0.136 4.136 10 C 0.138 3.862 11 N -0.598 5.598 12 C -0.264 4.264 13 H 0.074 0.926 14 C 0.046 3.954 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.286 1.286 18 H -0.302 1.302 19 H -0.270 1.270 20 C 0.157 3.843 21 C -0.084 4.084 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.102 4.102 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.395 0.605 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.028 0.972 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 11.737 -12.526 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.189 4.189 4 C 0.298 3.702 5 O -0.416 6.416 6 N -0.372 5.372 7 C 0.044 3.956 8 H 0.112 0.888 9 C -0.176 4.176 10 C 0.014 3.986 11 N -0.320 5.320 12 C -0.392 4.392 13 H 0.092 0.908 14 C -0.155 4.155 15 N -0.537 5.537 16 Si 0.700 3.300 17 H -0.213 1.213 18 H -0.230 1.230 19 H -0.194 1.194 20 C 0.029 3.971 21 C -0.087 4.087 22 C -0.185 4.185 23 C -0.196 4.196 24 C -0.140 4.140 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.228 0.772 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.275 12.002 -11.814 18.764 hybrid contribution -0.324 0.249 0.574 0.705 sum -8.600 12.250 -11.239 18.717 Atomic orbital electron populations 1.21780 0.93120 1.02436 1.02746 1.21317 0.97436 0.98086 0.96965 1.21595 1.01832 0.93662 1.01842 1.20629 0.80148 0.81899 0.87510 1.90705 1.37739 1.66235 1.46929 1.46274 1.53278 1.11874 1.25814 1.20359 0.94281 0.94102 0.86871 0.88838 1.21299 0.96130 1.00148 1.00060 1.20384 0.94363 0.94599 0.89235 1.44185 1.25793 1.13992 1.48037 1.18648 1.41781 0.86684 0.92111 0.90825 1.25468 0.97697 0.95034 0.97348 1.69883 1.50781 1.13085 1.19948 0.87022 0.77251 0.82971 0.82804 1.21340 1.23025 1.19431 1.20767 0.85802 0.95295 0.95189 1.21832 0.97466 0.95509 0.93919 1.21729 0.99644 0.96541 1.00554 1.21869 0.98260 0.98733 1.00700 1.21787 0.97605 0.97830 0.96793 0.91624 0.92160 0.92065 0.88780 0.91969 0.92331 0.91980 0.77156 0.91781 0.93638 0.91375 0.94897 0.92800 0.95386 0.93847 0.93649 0.94907 0.90340 0.93371 0.93376 0.93081 0.90703 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.09 37.16 0.34 -0.74 16 2 C -0.12 -1.10 3.26 -91.78 -0.30 -1.40 16 3 C -0.13 -1.27 8.48 37.16 0.32 -0.95 16 4 C 0.51 6.99 7.15 -10.99 -0.08 6.91 16 5 O -0.54 -9.74 15.64 5.55 0.09 -9.65 16 6 N -0.72 -9.22 4.84 -55.45 -0.27 -9.49 16 7 C 0.15 2.36 2.17 -69.60 -0.15 2.21 16 8 H 0.09 1.75 5.16 -51.93 -0.27 1.49 16 9 C -0.14 -2.36 4.91 -30.19 -0.15 -2.51 16 10 C 0.14 2.80 6.11 -5.20 -0.03 2.77 16 11 N -0.60 -13.85 2.13 -175.08 -0.37 -14.22 16 12 C -0.26 -7.09 9.24 -15.06 -0.14 -7.23 16 13 H 0.07 2.14 8.06 -52.48 -0.42 1.72 16 14 C 0.05 1.28 5.28 -17.43 -0.09 1.19 16 15 N -0.90 -26.60 13.97 55.49 0.78 -25.82 16 16 Si 0.87 22.37 25.26 -169.99 -4.29 18.08 16 17 H -0.29 -7.19 6.74 56.52 0.38 -6.81 16 18 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 19 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.16 3.43 3.04 -4.67 -0.01 3.41 16 21 C -0.08 -1.52 0.76 -152.54 -0.12 -1.64 16 22 C -0.13 -2.46 8.29 37.16 0.31 -2.15 16 23 C -0.14 -2.18 8.20 37.16 0.30 -1.87 16 24 C -0.10 -1.63 4.15 -27.19 -0.11 -1.74 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.40 7.57 -51.93 -0.39 0.01 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.39 3.88 7.95 -40.82 -0.32 3.56 16 33 H 0.06 1.13 6.93 -51.93 -0.36 0.77 16 34 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16 35 H 0.07 1.37 7.99 -51.93 -0.42 0.96 16 36 H 0.03 0.68 8.13 -51.93 -0.42 0.25 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.03 0.60 6.68 -51.93 -0.35 0.25 16 39 H 0.04 1.05 3.26 -51.92 -0.17 0.88 16 40 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.76 7.45 -51.93 -0.39 1.37 16 43 H 0.05 0.75 7.57 -51.93 -0.39 0.35 16 44 H 0.05 0.67 8.12 -51.92 -0.42 0.24 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.30 6.66 -51.93 -0.35 0.95 16 47 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -30.87 351.62 -7.13 -38.00 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.44 Total: 1.55 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.13 Total: -49.53 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.29 Total: 18.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.87 -7.13 -38.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089319842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.917 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds