Wall clock time and date at job start Tue Mar 31 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46832 * 2 1 4 4 C 1.50687 * 109.47541 * 120.00427 * 2 1 3 5 5 O 1.21287 * 120.00333 * 239.99934 * 4 2 1 6 6 N 1.34777 * 120.00167 * 59.99746 * 4 2 1 7 7 C 1.46497 * 120.00172 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.32795 * 32.98930 * 7 6 4 9 9 C 1.52520 * 110.25575 * 270.97799 * 7 6 4 10 10 C 1.46235 * 114.28575 * 151.61322 * 9 7 6 11 11 N 1.50171 * 107.52881 * 58.41117 * 10 9 7 12 12 C 1.36942 * 120.53859 * 109.59922 * 11 10 9 13 13 H 1.08003 * 119.99819 * 320.02345 * 12 11 10 14 14 C 1.38806 * 120.00084 * 140.01963 * 12 11 10 15 15 N 1.31625 * 119.99988 * 156.56253 * 14 12 11 16 16 Si 1.86797 * 120.00264 * 336.56554 * 14 12 11 17 17 H 1.48503 * 109.47272 * 95.56333 * 16 14 12 18 18 H 1.48496 * 109.47286 * 215.56863 * 16 14 12 19 19 H 1.48503 * 109.47200 * 335.56288 * 16 14 12 20 20 C 1.43426 * 118.92305 * 289.59948 * 11 10 9 21 21 C 1.54891 * 116.08316 * 91.56763 * 20 11 10 22 22 C 1.53004 * 109.36340 * 78.83923 * 21 20 11 23 23 C 1.53005 * 109.35961 * 198.42663 * 21 20 11 24 24 C 1.50133 * 110.25039 * 155.00108 * 7 6 4 25 25 H 1.09001 * 109.47605 * 59.99469 * 1 2 3 26 26 H 1.09003 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47447 * 299.99484 * 1 2 3 28 28 H 1.09000 * 109.46953 * 240.00917 * 2 1 3 29 29 H 1.08999 * 109.47253 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47459 * 300.00621 * 3 2 1 31 31 H 1.08998 * 109.47120 * 60.00710 * 3 2 1 32 32 H 0.97002 * 119.99926 * 0.02562 * 6 4 2 33 33 H 1.09005 * 108.52421 * 272.86116 * 9 7 6 34 34 H 1.09003 * 108.51923 * 30.52860 * 9 7 6 35 35 H 1.09005 * 109.84565 * 177.91718 * 10 9 7 36 36 H 1.09001 * 109.84882 * 298.83780 * 10 9 7 37 37 H 0.96995 * 119.99992 * 180.02562 * 15 14 12 38 38 H 1.09006 * 108.16280 * 329.84721 * 20 11 10 39 39 H 1.09013 * 108.15946 * 213.28317 * 20 11 10 40 40 H 1.09003 * 109.46770 * 59.99954 * 22 21 20 41 41 H 1.08996 * 109.47752 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.46854 * 300.00497 * 22 21 20 43 43 H 1.08997 * 109.47006 * 60.00421 * 23 21 20 44 44 H 1.09010 * 109.47074 * 179.97438 * 23 21 20 45 45 H 1.08999 * 109.47326 * 299.99827 * 23 21 20 46 46 H 1.09001 * 109.20581 * 96.31818 * 24 7 6 47 47 H 1.08994 * 109.17302 * 336.97525 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -0.1211 2.0287 6 7 1.7068 -2.0008 1.4435 7 6 2.1957 -2.6916 2.6393 8 1 2.2721 -1.9951 3.4743 9 6 3.5512 -3.3332 2.3614 10 6 4.4082 -3.4625 3.5392 11 7 3.6653 -4.2871 4.5508 12 6 4.0720 -5.5616 4.8436 13 1 4.4141 -6.2140 4.0538 14 6 4.0446 -6.0147 6.1553 15 7 3.9782 -7.3055 6.4044 16 14 4.1018 -4.7929 7.5670 17 1 2.7197 -4.5009 8.0254 18 1 4.8841 -5.3697 8.6896 19 1 4.7470 -3.5364 7.1084 20 6 2.5230 -3.7182 5.2053 21 6 1.1531 -3.9740 4.5292 22 6 0.6771 -5.3884 4.8667 23 6 0.1327 -2.9605 5.0513 24 6 1.2812 -3.8285 2.9930 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.1494 -2.4723 0.8049 33 1 3.3851 -4.3261 1.9432 34 1 4.0744 -2.7296 1.6198 35 1 5.3386 -3.9609 3.2669 36 1 4.6235 -2.4763 3.9503 37 1 3.9587 -7.6221 7.3210 38 1 2.6722 -2.6405 5.2736 39 1 2.4803 -4.1146 6.2199 40 1 0.5745 -5.4891 5.9472 41 1 -0.2871 -5.5703 4.3921 42 1 1.4047 -6.1133 4.5017 43 1 0.4712 -1.9510 4.8180 44 1 -0.8322 -3.1386 4.5762 45 1 0.0320 -3.0696 6.1311 46 1 1.6815 -4.7533 2.5773 47 1 0.2956 -3.6410 2.5671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089319842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:44 Heat of formation + Delta-G solvation = -49.710374 kcal Electronic energy + Delta-G solvation = -24438.600236 eV Core-core repulsion = 21234.610517 eV Total energy + Delta-G solvation = -3203.989719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38158 -39.92934 -36.37184 -35.91005 -35.39231 -34.00800 -32.21655 -29.28281 -28.12846 -27.89757 -27.44000 -25.60003 -24.62431 -22.88379 -21.53619 -20.99348 -19.95752 -18.45184 -17.94628 -17.60536 -16.76296 -16.49789 -16.25067 -15.52615 -15.37950 -15.19914 -14.91055 -14.69516 -14.37076 -14.05021 -13.94380 -13.70930 -13.54421 -13.33197 -13.10998 -12.99937 -12.96751 -12.82082 -12.57648 -12.34977 -12.15750 -12.04740 -12.00211 -11.92727 -11.89639 -11.63827 -11.44455 -11.26021 -11.17914 -10.61448 -10.53017 -9.97607 -8.64170 -8.18552 -5.55258 1.27429 1.37662 1.48496 1.73149 2.26814 2.42588 3.05094 3.29948 3.74712 3.80372 3.93483 3.96305 4.05337 4.11930 4.26621 4.28275 4.43344 4.53793 4.58662 4.65040 4.74580 4.80412 4.83879 4.85527 4.90708 4.94412 4.97307 5.01111 5.05486 5.08769 5.09619 5.15517 5.22547 5.27822 5.35750 5.37088 5.37898 5.45667 5.49901 5.68350 5.72042 6.00066 6.20574 6.67654 7.03438 7.37706 7.65756 8.14713 9.00869 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.005115 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.397450 B = 5472.644515 C = 5782.649517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.132 4.132 4 C 0.508 3.492 5 O -0.589 6.589 6 N -0.709 5.709 7 C 0.158 3.842 8 H 0.069 0.931 9 C -0.128 4.128 10 C 0.139 3.861 11 N -0.607 5.607 12 C -0.243 4.243 13 H 0.044 0.956 14 C 0.003 3.997 15 N -0.937 5.937 16 Si 0.920 3.080 17 H -0.278 1.278 18 H -0.307 1.307 19 H -0.272 1.272 20 C 0.154 3.846 21 C -0.082 4.082 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.092 4.092 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.413 0.587 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.261 0.739 38 H 0.031 0.969 39 H 0.017 0.983 40 H 0.027 0.973 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 13.425 -14.669 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.190 4.190 4 C 0.296 3.704 5 O -0.469 6.469 6 N -0.360 5.360 7 C 0.053 3.947 8 H 0.087 0.913 9 C -0.168 4.168 10 C 0.015 3.985 11 N -0.330 5.330 12 C -0.372 4.372 13 H 0.062 0.938 14 C -0.195 4.195 15 N -0.581 5.581 16 Si 0.750 3.250 17 H -0.206 1.206 18 H -0.236 1.236 19 H -0.197 1.197 20 C 0.027 3.973 21 C -0.086 4.086 22 C -0.176 4.176 23 C -0.189 4.189 24 C -0.130 4.130 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.622 13.711 -13.996 22.286 hybrid contribution 0.427 -0.246 1.163 1.263 sum -10.195 13.465 -12.832 21.211 Atomic orbital electron populations 1.21794 0.91149 1.03519 1.03281 1.21369 0.98884 0.97353 0.95376 1.21615 1.00788 0.94159 1.02413 1.21466 0.79079 0.81740 0.88152 1.90692 1.40008 1.67277 1.48924 1.46075 1.53120 1.11749 1.25064 1.19988 0.93545 0.93550 0.87575 0.91257 1.21141 0.96727 1.00382 0.98561 1.20454 0.94729 0.93692 0.89592 1.44257 1.26994 1.13085 1.48673 1.18482 1.39934 0.87692 0.91128 0.93843 1.25856 0.98583 0.95895 0.99123 1.69970 1.53420 1.14516 1.20153 0.86200 0.77329 0.80952 0.80516 1.20565 1.23592 1.19711 1.20834 0.87313 0.94932 0.94253 1.21755 0.95722 0.95636 0.95459 1.21613 1.00244 0.96201 0.99527 1.21802 0.98641 0.97817 1.00608 1.21655 0.99388 0.97048 0.94926 0.89363 0.90821 0.93313 0.86237 0.93675 0.89445 0.93687 0.74935 0.92004 0.92707 0.91919 0.95152 0.92950 0.95112 0.96463 0.95343 0.91531 0.94239 0.93076 0.90465 0.93567 0.92114 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.09 71.98 0.65 -0.87 16 2 C -0.11 -1.69 3.26 -11.54 -0.04 -1.73 16 3 C -0.13 -2.25 8.48 71.98 0.61 -1.64 16 4 C 0.51 12.68 7.15 87.65 0.63 13.31 16 5 O -0.59 -20.81 15.64 -3.05 -0.05 -20.85 16 6 N -0.71 -15.93 4.84 -447.72 -2.17 -18.10 16 7 C 0.16 4.76 2.17 43.91 0.10 4.85 16 8 H 0.07 2.51 5.16 -2.38 -0.01 2.50 16 9 C -0.13 -4.32 4.91 28.35 0.14 -4.18 16 10 C 0.14 5.65 6.11 83.58 0.51 6.16 16 11 N -0.61 -28.44 2.13 -707.84 -1.51 -29.95 16 12 C -0.24 -13.42 9.24 84.03 0.78 -12.64 16 13 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 14 C 0.00 0.17 5.28 84.86 0.45 0.62 16 15 N -0.94 -57.37 13.97 21.65 0.30 -57.07 16 16 Si 0.92 47.33 25.26 68.60 1.73 49.07 16 17 H -0.28 -13.84 6.74 99.48 0.67 -13.17 16 18 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 19 H -0.27 -13.94 7.11 99.48 0.71 -13.23 16 20 C 0.15 6.66 3.04 87.59 0.27 6.93 16 21 C -0.08 -2.86 0.76 -50.90 -0.04 -2.90 16 22 C -0.12 -4.46 8.29 71.98 0.60 -3.86 16 23 C -0.13 -3.75 8.20 71.98 0.59 -3.16 16 24 C -0.09 -2.70 4.15 30.30 0.13 -2.57 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.62 7.57 -2.39 -0.02 0.60 16 27 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.41 6.34 7.95 -92.71 -0.74 5.61 16 33 H 0.06 2.13 6.93 -2.38 -0.02 2.11 16 34 H 0.05 1.75 8.02 -2.39 -0.02 1.73 16 35 H 0.06 2.57 7.99 -2.38 -0.02 2.55 16 36 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.03 1.30 6.68 -2.38 -0.02 1.29 16 39 H 0.02 0.84 3.26 -2.38 -0.01 0.84 16 40 H 0.03 1.13 8.13 -2.39 -0.02 1.11 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.78 7.45 -2.39 -0.02 1.76 16 43 H 0.05 1.44 7.57 -2.39 -0.02 1.43 16 44 H 0.08 1.79 8.12 -2.38 -0.02 1.77 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.99 6.66 -2.39 -0.02 1.98 16 47 H 0.08 1.90 7.67 -2.39 -0.02 1.88 16 Total: -1.00 -69.90 351.62 3.84 -66.07 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.16 Total: 12.53 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.36 Total: -1.69 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.37 Total: -105.12 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.73 Total: 49.07 kcal Total: -69.90 3.84 -66.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089319842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.358 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds