Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 C 1.50703 * 109.47394 * 239.99959 * 2 1 3 5 5 O 1.21276 * 120.00205 * 119.99559 * 4 2 1 6 6 N 1.34774 * 119.99968 * 299.99966 * 4 2 1 7 7 C 1.46504 * 120.00031 * 179.97438 * 6 4 2 8 8 H 1.08998 * 108.44694 * 327.30853 * 7 6 4 9 9 C 1.47089 * 108.51302 * 85.00127 * 7 6 4 10 10 C 1.54862 * 110.32583 * 184.05591 * 9 7 6 11 11 N 1.44574 * 109.59911 * 288.73393 * 10 9 7 12 12 C 1.36938 * 118.64374 * 270.74790 * 11 10 9 13 13 H 1.07995 * 120.00290 * 140.39718 * 12 11 10 14 14 C 1.38811 * 119.99928 * 320.39909 * 12 11 10 15 15 N 1.31614 * 120.00440 * 156.09397 * 14 12 11 16 16 Si 1.86803 * 119.99880 * 336.09423 * 14 12 11 17 17 H 1.48503 * 109.47365 * 95.21015 * 16 14 12 18 18 H 1.48507 * 109.47091 * 215.21211 * 16 14 12 19 19 H 1.48506 * 109.47113 * 335.21044 * 16 14 12 20 20 C 1.47609 * 122.71465 * 90.72287 * 11 10 9 21 21 C 1.53952 * 112.14153 * 317.86820 * 20 11 10 22 22 C 1.52998 * 109.36309 * 79.62696 * 21 20 11 23 23 C 1.52997 * 109.36376 * 199.37242 * 21 20 11 24 24 C 1.50883 * 110.09502 * 319.43760 * 21 20 11 25 25 H 1.09003 * 109.46796 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47371 * 299.99696 * 1 2 3 27 27 H 1.08999 * 109.47309 * 60.00587 * 1 2 3 28 28 H 1.09002 * 109.47390 * 119.99922 * 2 1 3 29 29 H 1.08999 * 109.47128 * 59.99740 * 3 2 1 30 30 H 1.09006 * 109.46863 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46612 * 299.99840 * 3 2 1 32 32 H 0.97006 * 119.99960 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.32868 * 304.31771 * 9 7 6 34 34 H 1.09001 * 109.32961 * 63.96359 * 9 7 6 35 35 H 1.09007 * 109.44767 * 48.77061 * 10 9 7 36 36 H 1.08993 * 109.45309 * 168.71590 * 10 9 7 37 37 H 0.96995 * 120.00672 * 180.02562 * 15 14 12 38 38 H 1.08996 * 108.94464 * 78.55305 * 20 11 10 39 39 H 1.08994 * 108.94768 * 197.18307 * 20 11 10 40 40 H 1.08993 * 109.47297 * 58.61001 * 22 21 20 41 41 H 1.09003 * 109.46473 * 178.60587 * 22 21 20 42 42 H 1.08995 * 109.47319 * 298.60122 * 22 21 20 43 43 H 1.08995 * 109.47483 * 60.00334 * 23 21 20 44 44 H 1.09000 * 109.46830 * 180.02562 * 23 21 20 45 45 H 1.09001 * 109.47230 * 299.99499 * 23 21 20 46 46 H 1.09003 * 109.49097 * 331.91800 * 24 21 20 47 47 H 1.09003 * 109.48474 * 211.85329 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -0.1210 -2.0288 6 7 1.7068 -2.0007 -1.4437 7 6 2.1948 -2.6912 -2.6402 8 1 2.2636 -1.9674 -3.4522 9 6 3.5424 -3.2111 -2.3624 10 6 4.1405 -3.8619 -3.6340 11 7 3.4547 -5.1040 -3.9116 12 6 3.9312 -6.2572 -3.3474 13 1 3.2424 -6.9985 -2.9702 14 6 5.2996 -6.4733 -3.2602 15 7 5.7800 -7.2904 -2.3471 16 14 6.4593 -5.6044 -4.4390 17 1 6.9770 -4.3668 -3.8021 18 1 7.5944 -6.5032 -4.7693 19 1 5.7285 -5.2524 -5.6830 20 6 2.2617 -5.1804 -4.7775 21 6 1.2783 -4.0257 -4.5136 22 6 1.7743 -2.7645 -5.2238 23 6 -0.1028 -4.4022 -5.0536 24 6 1.1777 -3.7588 -3.0320 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.1494 -2.4723 -0.8050 33 1 4.1855 -2.3923 -2.0396 34 1 3.4848 -3.9582 -1.5708 35 1 4.0204 -3.1842 -4.4794 36 1 5.2005 -4.0605 -3.4759 37 1 6.7362 -7.4411 -2.2860 38 1 2.5782 -5.1445 -5.8199 39 1 1.7529 -6.1270 -4.5962 40 1 1.8605 -2.9595 -6.2926 41 1 1.0664 -1.9523 -5.0585 42 1 2.7493 -2.4832 -4.8260 43 1 -0.4559 -5.3031 -4.5520 44 1 -0.8004 -3.5855 -4.8680 45 1 -0.0360 -4.5857 -6.1260 46 1 1.3843 -4.6771 -2.4822 47 1 0.1732 -3.4095 -2.7928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089319844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -17.031806 kcal Electronic energy + Delta-G solvation = -24438.027378 eV Core-core repulsion = 21235.454709 eV Total energy + Delta-G solvation = -3202.572670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31866 -38.77060 -34.89702 -34.58609 -34.44457 -31.65015 -30.69208 -27.76799 -27.17590 -27.08979 -25.72060 -24.44512 -23.30454 -21.66563 -19.89190 -19.83922 -18.06797 -17.05342 -16.55429 -16.35331 -15.35582 -15.11346 -14.83107 -14.28692 -14.10147 -13.80519 -13.45428 -13.21377 -13.00792 -12.72003 -12.61478 -12.43838 -12.33197 -12.08495 -11.91233 -11.82552 -11.61471 -11.48553 -11.28583 -11.17651 -10.93710 -10.76691 -10.60451 -10.40099 -10.30499 -10.00261 -9.78149 -9.55398 -9.42328 -9.35593 -8.71010 -8.42338 -6.73133 -5.99322 -3.39665 2.85878 3.35747 3.41569 3.49810 3.56260 4.55485 4.66377 4.79213 4.85917 4.97686 5.02716 5.19794 5.27356 5.30160 5.42646 5.44401 5.56247 5.58673 5.69125 5.73841 5.80304 5.82742 5.89714 5.97697 5.99728 6.05052 6.13515 6.14877 6.15795 6.26379 6.28188 6.42519 6.48798 6.54364 6.63346 6.75623 6.80439 6.86806 6.90254 6.94500 7.15936 7.76977 8.11797 8.40341 8.47171 9.07468 9.75306 10.13836 11.16206 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.005809 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.470125 B = 4819.143558 C = 5622.158979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.131 4.131 4 C 0.512 3.488 5 O -0.545 6.545 6 N -0.726 5.726 7 C 0.140 3.860 8 H 0.095 0.905 9 C -0.150 4.150 10 C 0.145 3.855 11 N -0.600 5.600 12 C -0.273 4.273 13 H 0.075 0.925 14 C 0.040 3.960 15 N -0.898 5.898 16 Si 0.873 3.127 17 H -0.286 1.286 18 H -0.302 1.302 19 H -0.269 1.269 20 C 0.159 3.841 21 C -0.078 4.078 22 C -0.158 4.158 23 C -0.133 4.133 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.394 0.606 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.262 0.738 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 12.346 2.306 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 C -0.189 4.189 4 C 0.298 3.702 5 O -0.423 6.423 6 N -0.376 5.376 7 C 0.037 3.963 8 H 0.112 0.888 9 C -0.191 4.191 10 C 0.018 3.982 11 N -0.323 5.323 12 C -0.401 4.401 13 H 0.093 0.907 14 C -0.161 4.161 15 N -0.539 5.539 16 Si 0.703 3.297 17 H -0.214 1.214 18 H -0.230 1.230 19 H -0.194 1.194 20 C 0.034 3.966 21 C -0.080 4.080 22 C -0.215 4.215 23 C -0.191 4.191 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.020 12.668 1.759 17.551 hybrid contribution 0.572 0.105 -0.150 0.601 sum -11.448 12.773 1.609 17.228 Atomic orbital electron populations 1.21768 0.93186 1.02409 1.02619 1.21323 0.97380 0.98065 0.97154 1.21588 1.01851 0.93693 1.01725 1.20600 0.80145 0.81968 0.87467 1.90675 1.38040 1.66410 1.47125 1.46472 1.53264 1.11796 1.26058 1.20365 0.94054 0.94796 0.87062 0.88777 1.21726 0.95310 0.99930 1.02122 1.21185 0.95913 0.87539 0.93591 1.43847 1.30528 1.03401 1.54519 1.18772 0.90750 0.97431 1.33182 0.90714 1.25466 0.97185 0.96362 0.97045 1.69886 1.13112 1.39163 1.31735 0.87000 0.80685 0.78267 0.83786 1.21356 1.22953 1.19387 1.21328 0.87215 0.95220 0.92860 1.20679 0.95854 0.96879 0.94622 1.22399 1.02105 0.97003 0.99945 1.21834 0.95661 1.00881 1.00748 1.21293 0.96859 0.99439 0.96431 0.92151 0.91660 0.92182 0.88728 0.92371 0.91980 0.92067 0.77275 0.92960 0.91085 0.93719 0.92838 0.92775 0.96345 0.92399 0.93155 0.93409 0.90450 0.92634 0.93257 0.92858 0.90125 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.09 37.16 0.34 -0.82 16 2 C -0.12 -1.23 3.26 -91.77 -0.30 -1.53 16 3 C -0.13 -1.36 8.48 37.16 0.32 -1.05 16 4 C 0.51 7.47 7.00 -10.99 -0.08 7.40 16 5 O -0.55 -10.13 15.48 5.56 0.09 -10.05 16 6 N -0.73 -10.10 4.78 -56.82 -0.27 -10.37 16 7 C 0.14 2.31 1.79 -70.99 -0.13 2.18 16 8 H 0.09 1.67 3.95 -51.93 -0.21 1.46 16 9 C -0.15 -2.98 5.19 -28.59 -0.15 -3.12 16 10 C 0.14 3.20 4.44 -4.09 -0.02 3.18 16 11 N -0.60 -13.79 1.82 -172.09 -0.31 -14.10 16 12 C -0.27 -7.41 9.67 -15.06 -0.15 -7.55 16 13 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 14 C 0.04 1.15 5.22 -17.43 -0.09 1.06 16 15 N -0.90 -27.14 13.97 55.49 0.78 -26.37 16 16 Si 0.87 22.43 25.25 -169.99 -4.29 18.14 16 17 H -0.29 -7.25 6.67 56.52 0.38 -6.88 16 18 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.16 3.07 5.14 -2.94 -0.02 3.05 16 21 C -0.08 -1.22 0.75 -155.08 -0.12 -1.33 16 22 C -0.16 -2.42 6.76 37.16 0.25 -2.16 16 23 C -0.13 -1.70 8.15 37.16 0.30 -1.40 16 24 C -0.10 -1.57 4.38 -28.02 -0.12 -1.69 16 25 H 0.06 0.45 7.56 -51.93 -0.39 0.05 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.39 4.46 8.03 -40.82 -0.33 4.14 16 33 H 0.05 1.07 7.95 -51.93 -0.41 0.65 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.04 0.93 5.25 -51.92 -0.27 0.66 16 36 H 0.05 1.32 3.44 -51.93 -0.18 1.15 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 39 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 40 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.05 0.67 7.96 -51.93 -0.41 0.26 16 42 H 0.08 1.33 3.12 -51.93 -0.16 1.17 16 43 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.42 7.48 -51.93 -0.39 1.04 16 47 H 0.05 0.73 7.63 -51.93 -0.40 0.34 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -31.35 345.27 -6.95 -38.30 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.19 Total: 3.05 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.05 Total: -3.80 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.19 Total: -50.84 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.29 Total: 18.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.35 -6.95 -38.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089319844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.269 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds