Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 C 1.50703 * 109.47394 * 239.99959 * 2 1 3 5 5 O 1.21276 * 120.00205 * 119.99559 * 4 2 1 6 6 N 1.34774 * 119.99968 * 299.99966 * 4 2 1 7 7 C 1.46504 * 120.00031 * 179.97438 * 6 4 2 8 8 H 1.08998 * 108.44694 * 327.30853 * 7 6 4 9 9 C 1.47089 * 108.51302 * 85.00127 * 7 6 4 10 10 C 1.54862 * 110.32583 * 184.05591 * 9 7 6 11 11 N 1.44574 * 109.59911 * 288.73393 * 10 9 7 12 12 C 1.36938 * 118.64374 * 270.74790 * 11 10 9 13 13 H 1.07995 * 120.00290 * 140.39718 * 12 11 10 14 14 C 1.38811 * 119.99928 * 320.39909 * 12 11 10 15 15 N 1.31614 * 120.00440 * 156.09397 * 14 12 11 16 16 Si 1.86803 * 119.99880 * 336.09423 * 14 12 11 17 17 H 1.48503 * 109.47365 * 95.21015 * 16 14 12 18 18 H 1.48507 * 109.47091 * 215.21211 * 16 14 12 19 19 H 1.48506 * 109.47113 * 335.21044 * 16 14 12 20 20 C 1.47609 * 122.71465 * 90.72287 * 11 10 9 21 21 C 1.53952 * 112.14153 * 317.86820 * 20 11 10 22 22 C 1.52998 * 109.36309 * 79.62696 * 21 20 11 23 23 C 1.52997 * 109.36376 * 199.37242 * 21 20 11 24 24 C 1.50883 * 110.09502 * 319.43760 * 21 20 11 25 25 H 1.09003 * 109.46796 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47371 * 299.99696 * 1 2 3 27 27 H 1.08999 * 109.47309 * 60.00587 * 1 2 3 28 28 H 1.09002 * 109.47390 * 119.99922 * 2 1 3 29 29 H 1.08999 * 109.47128 * 59.99740 * 3 2 1 30 30 H 1.09006 * 109.46863 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46612 * 299.99840 * 3 2 1 32 32 H 0.97006 * 119.99960 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.32868 * 304.31771 * 9 7 6 34 34 H 1.09001 * 109.32961 * 63.96359 * 9 7 6 35 35 H 1.09007 * 109.44767 * 48.77061 * 10 9 7 36 36 H 1.08993 * 109.45309 * 168.71590 * 10 9 7 37 37 H 0.96995 * 120.00672 * 180.02562 * 15 14 12 38 38 H 1.08996 * 108.94464 * 78.55305 * 20 11 10 39 39 H 1.08994 * 108.94768 * 197.18307 * 20 11 10 40 40 H 1.08993 * 109.47297 * 58.61001 * 22 21 20 41 41 H 1.09003 * 109.46473 * 178.60587 * 22 21 20 42 42 H 1.08995 * 109.47319 * 298.60122 * 22 21 20 43 43 H 1.08995 * 109.47483 * 60.00334 * 23 21 20 44 44 H 1.09000 * 109.46830 * 180.02562 * 23 21 20 45 45 H 1.09001 * 109.47230 * 299.99499 * 23 21 20 46 46 H 1.09003 * 109.49097 * 331.91800 * 24 21 20 47 47 H 1.09003 * 109.48474 * 211.85329 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -0.1210 -2.0288 6 7 1.7068 -2.0007 -1.4437 7 6 2.1948 -2.6912 -2.6402 8 1 2.2636 -1.9674 -3.4522 9 6 3.5424 -3.2111 -2.3624 10 6 4.1405 -3.8619 -3.6340 11 7 3.4547 -5.1040 -3.9116 12 6 3.9312 -6.2572 -3.3474 13 1 3.2424 -6.9985 -2.9702 14 6 5.2996 -6.4733 -3.2602 15 7 5.7800 -7.2904 -2.3471 16 14 6.4593 -5.6044 -4.4390 17 1 6.9770 -4.3668 -3.8021 18 1 7.5944 -6.5032 -4.7693 19 1 5.7285 -5.2524 -5.6830 20 6 2.2617 -5.1804 -4.7775 21 6 1.2783 -4.0257 -4.5136 22 6 1.7743 -2.7645 -5.2238 23 6 -0.1028 -4.4022 -5.0536 24 6 1.1777 -3.7588 -3.0320 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.1494 -2.4723 -0.8050 33 1 4.1855 -2.3923 -2.0396 34 1 3.4848 -3.9582 -1.5708 35 1 4.0204 -3.1842 -4.4794 36 1 5.2005 -4.0605 -3.4759 37 1 6.7362 -7.4411 -2.2860 38 1 2.5782 -5.1445 -5.8199 39 1 1.7529 -6.1270 -4.5962 40 1 1.8605 -2.9595 -6.2926 41 1 1.0664 -1.9523 -5.0585 42 1 2.7493 -2.4832 -4.8260 43 1 -0.4559 -5.3031 -4.5520 44 1 -0.8004 -3.5855 -4.8680 45 1 -0.0360 -4.5857 -6.1260 46 1 1.3843 -4.6771 -2.4822 47 1 0.1732 -3.4095 -2.7928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089319844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = -37.027037 kcal Electronic energy + Delta-G solvation = -24438.894437 eV Core-core repulsion = 21235.454709 eV Total energy + Delta-G solvation = -3203.439728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62423 -40.08444 -36.52198 -35.98416 -35.40769 -33.63351 -32.25035 -29.11813 -28.25014 -27.91319 -27.51855 -25.91658 -24.61943 -23.22775 -21.46483 -20.98047 -19.34182 -18.68573 -18.04480 -17.83188 -16.96728 -16.34983 -16.27697 -15.69287 -15.30578 -15.27757 -14.98861 -14.55952 -14.24941 -14.20676 -13.99959 -13.90886 -13.56310 -13.23386 -13.12210 -13.02056 -12.92479 -12.77178 -12.61849 -12.40551 -12.15368 -12.08391 -12.00730 -11.95316 -11.85284 -11.66753 -11.44999 -11.22700 -10.86200 -10.65870 -10.56722 -9.97618 -8.68470 -8.21843 -5.57228 1.28104 1.37003 1.47803 1.72656 2.29774 2.40610 3.03171 3.38068 3.67419 3.77001 3.93775 4.01368 4.04925 4.09710 4.13774 4.32577 4.37288 4.52666 4.60523 4.64353 4.70276 4.78767 4.79414 4.80393 4.91331 4.94424 4.95018 4.96445 5.04641 5.08686 5.11606 5.14193 5.21124 5.28303 5.32946 5.35009 5.37849 5.44959 5.52785 5.61985 5.67145 5.97101 6.18737 6.66248 7.05034 7.35278 7.67955 8.05877 8.97746 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.005809 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.470125 B = 4819.143558 C = 5622.158979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.130 4.130 4 C 0.506 3.494 5 O -0.589 6.589 6 N -0.717 5.717 7 C 0.145 3.855 8 H 0.091 0.909 9 C -0.134 4.134 10 C 0.140 3.860 11 N -0.606 5.606 12 C -0.254 4.254 13 H 0.046 0.954 14 C -0.011 4.011 15 N -0.943 5.943 16 Si 0.929 3.071 17 H -0.284 1.284 18 H -0.306 1.306 19 H -0.262 1.262 20 C 0.155 3.845 21 C -0.073 4.073 22 C -0.153 4.153 23 C -0.127 4.127 24 C -0.093 4.093 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.409 0.591 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.210 14.155 2.076 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 C -0.188 4.188 4 C 0.294 3.706 5 O -0.470 6.470 6 N -0.368 5.368 7 C 0.041 3.959 8 H 0.108 0.892 9 C -0.175 4.175 10 C 0.014 3.986 11 N -0.329 5.329 12 C -0.384 4.384 13 H 0.063 0.937 14 C -0.208 4.208 15 N -0.587 5.587 16 Si 0.758 3.242 17 H -0.212 1.212 18 H -0.234 1.234 19 H -0.186 1.186 20 C 0.031 3.969 21 C -0.074 4.074 22 C -0.210 4.210 23 C -0.185 4.185 24 C -0.131 4.131 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.245 0.755 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.622 14.492 1.528 20.644 hybrid contribution 1.315 -0.453 -0.044 1.391 sum -13.308 14.040 1.484 19.401 Atomic orbital electron populations 1.21771 0.90886 1.03410 1.03432 1.21384 0.99152 0.97490 0.95297 1.21601 1.00632 0.93970 1.02579 1.21426 0.79155 0.81827 0.88166 1.90656 1.40019 1.67344 1.48967 1.46330 1.53091 1.11775 1.25612 1.20115 0.92640 0.95056 0.88094 0.89163 1.21534 0.97383 0.98564 1.00035 1.21204 0.94433 0.87630 0.95363 1.43908 1.31581 1.02318 1.55071 1.18699 0.90188 0.97831 1.31706 0.93674 1.25973 0.98744 0.97712 0.98360 1.69989 1.13275 1.41807 1.33617 0.86082 0.78863 0.77137 0.82082 1.21214 1.23425 1.18586 1.21501 0.86450 0.96993 0.91989 1.20631 0.96476 0.95397 0.94944 1.22326 1.01223 0.97155 1.00290 1.21785 0.93772 1.01804 1.01136 1.21220 0.98043 0.97814 0.96065 0.91083 0.89392 0.92852 0.87037 0.89454 0.93939 0.93230 0.75510 0.94033 0.93586 0.91893 0.95653 0.92958 0.96231 0.93005 0.92206 0.91669 0.92723 0.92417 0.91042 0.92031 0.92633 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.09 71.98 0.65 -1.10 16 2 C -0.11 -2.07 3.26 -11.54 -0.04 -2.11 16 3 C -0.13 -2.48 8.48 71.98 0.61 -1.87 16 4 C 0.51 14.04 7.00 87.66 0.61 14.66 16 5 O -0.59 -21.68 15.48 -3.02 -0.05 -21.73 16 6 N -0.72 -18.69 4.78 -452.06 -2.16 -20.85 16 7 C 0.14 4.60 1.79 43.01 0.08 4.68 16 8 H 0.09 3.06 3.95 -2.39 -0.01 3.05 16 9 C -0.13 -5.38 5.19 29.39 0.15 -5.22 16 10 C 0.14 6.23 4.44 87.37 0.39 6.62 16 11 N -0.61 -27.94 1.82 -698.38 -1.27 -29.21 16 12 C -0.25 -14.17 9.67 84.03 0.81 -13.35 16 13 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 14 C -0.01 -0.64 5.22 84.86 0.44 -0.20 16 15 N -0.94 -58.90 13.97 21.65 0.30 -58.60 16 16 Si 0.93 47.48 25.25 68.60 1.73 49.22 16 17 H -0.28 -14.34 6.67 99.48 0.66 -13.67 16 18 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 19 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 20 C 0.15 5.81 5.14 86.49 0.44 6.25 16 21 C -0.07 -2.08 0.75 -52.55 -0.04 -2.12 16 22 C -0.15 -4.27 6.76 71.98 0.49 -3.78 16 23 C -0.13 -2.77 8.15 71.98 0.59 -2.18 16 24 C -0.09 -2.67 4.38 29.76 0.13 -2.54 16 25 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.96 8.10 -2.38 -0.02 0.94 16 31 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 32 H 0.41 8.24 8.03 -92.70 -0.74 7.49 16 33 H 0.04 1.72 7.95 -2.38 -0.02 1.71 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 2.58 5.25 -2.38 -0.01 2.57 16 36 H 0.03 1.27 3.44 -2.39 -0.01 1.26 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.02 0.74 7.96 -2.39 -0.02 0.72 16 39 H 0.05 1.99 7.71 -2.39 -0.02 1.97 16 40 H 0.06 1.54 8.10 -2.39 -0.02 1.53 16 41 H 0.06 1.60 7.96 -2.39 -0.02 1.58 16 42 H 0.05 1.78 3.12 -2.39 -0.01 1.77 16 43 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 44 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.05 1.90 7.48 -2.39 -0.02 1.88 16 47 H 0.09 1.98 7.63 -2.39 -0.02 1.96 16 Total: -1.00 -70.48 345.27 4.04 -66.43 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.16 Total: 17.00 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.32 Total: -2.26 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -3.12 Total: -108.66 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.73 Total: 49.22 kcal Total: -70.48 4.04 -66.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089319844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.406 kcal (2) G-P(sol) polarization free energy of solvation -70.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds