Wall clock time and date at job start Tue Mar 31 2020 05:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.46993 * 2 1 4 4 C 1.50709 * 109.46959 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99580 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99740 * 179.72622 * 4 3 2 7 7 C 1.46507 * 119.99833 * 180.27685 * 6 4 3 8 8 C 1.52998 * 109.47265 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.58422 * 60.10935 * 8 7 6 10 10 C 1.53192 * 109.58570 * 180.53832 * 8 7 6 11 11 C 1.53039 * 109.30964 * 174.42380 * 10 8 7 12 12 C 1.53041 * 109.54095 * 298.63416 * 11 10 8 13 13 C 1.53002 * 109.49675 * 301.41738 * 12 11 10 14 14 C 1.52999 * 109.52609 * 181.33582 * 12 11 10 15 15 C 1.53195 * 109.31033 * 61.36457 * 12 11 10 16 16 N 1.46922 * 109.58627 * 299.82812 * 8 7 6 17 17 C 1.36939 * 120.63332 * 6.62521 * 16 8 7 18 18 H 1.08001 * 119.99618 * 328.76276 * 17 16 8 19 19 C 1.38813 * 119.99993 * 148.75802 * 17 16 8 20 20 N 1.31618 * 119.99635 * 162.55167 * 19 17 16 21 21 Si 1.86800 * 120.00157 * 342.55464 * 19 17 16 22 22 H 1.48501 * 109.46819 * 89.98565 * 21 19 17 23 23 H 1.48497 * 109.47220 * 209.98032 * 21 19 17 24 24 H 1.48496 * 109.47322 * 329.98669 * 21 19 17 25 25 H 1.09004 * 109.47489 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47443 * 59.99858 * 1 2 3 27 27 H 1.09004 * 109.47446 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46777 * 240.00244 * 2 1 3 29 29 H 1.08997 * 109.47081 * 120.00540 * 2 1 3 30 30 H 1.09000 * 109.47160 * 60.00478 * 3 2 1 31 31 H 1.08997 * 109.47648 * 300.00193 * 3 2 1 32 32 H 0.97000 * 120.00452 * 0.27051 * 6 4 3 33 33 H 1.08999 * 109.46678 * 300.00261 * 7 6 4 34 34 H 1.09000 * 109.46910 * 59.99802 * 7 6 4 35 35 H 1.08996 * 109.49518 * 294.37412 * 10 8 7 36 36 H 1.08997 * 109.49584 * 54.47540 * 10 8 7 37 37 H 1.09006 * 109.45666 * 178.61293 * 11 10 8 38 38 H 1.08996 * 109.45172 * 58.64706 * 11 10 8 39 39 H 1.08994 * 109.47297 * 179.83683 * 13 12 11 40 40 H 1.09000 * 109.46833 * 299.83670 * 13 12 11 41 41 H 1.08998 * 109.47107 * 59.83199 * 13 12 11 42 42 H 1.08999 * 109.46843 * 300.14690 * 14 12 11 43 43 H 1.08996 * 109.47032 * 60.14545 * 14 12 11 44 44 H 1.08998 * 109.46819 * 180.14505 * 14 12 11 45 45 H 1.08998 * 109.58214 * 185.57801 * 15 12 11 46 46 H 1.08996 * 109.70079 * 65.22499 * 15 12 11 47 47 H 0.97000 * 119.99627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1533 0.3921 -0.0015 6 7 4.2208 2.6096 -0.0063 7 6 5.6858 2.6096 -0.0131 8 6 6.1959 4.0521 -0.0193 9 1 5.8393 4.5695 0.8714 10 6 7.7276 4.0551 -0.0399 11 6 8.2290 5.4936 -0.1863 12 6 7.7270 6.0785 -1.5084 13 6 8.2234 5.2152 -2.6700 14 6 8.2558 7.5051 -1.6700 15 6 6.1951 6.0984 -1.5044 16 7 5.7054 4.7427 -1.2197 17 6 4.8084 4.1348 -2.0570 18 1 4.8214 3.0613 -2.1745 19 6 3.8826 4.8983 -2.7547 20 7 3.2608 4.3885 -3.7967 21 14 3.5193 6.6493 -2.2148 22 1 4.4419 7.5829 -2.9093 23 1 2.1162 6.9924 -2.5593 24 1 3.7110 6.7645 -0.7468 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.7358 3.4497 -0.0060 33 1 6.0532 2.0977 0.8764 34 1 6.0450 2.0938 -0.9036 35 1 8.1048 3.6313 0.8908 36 1 8.0813 3.4592 -0.8812 37 1 9.3189 5.5010 -0.1765 38 1 7.8543 6.0947 0.6421 39 1 7.8633 5.6305 -3.6111 40 1 9.3133 5.2014 -2.6724 41 1 7.8474 4.1988 -2.5538 42 1 7.9028 8.1194 -0.8417 43 1 9.3457 7.4904 -1.6728 44 1 7.8956 7.9217 -2.6106 45 1 5.8314 6.4210 -2.4800 46 1 5.8386 6.7846 -0.7363 47 1 2.6136 4.9219 -4.2840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098861886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:15 Heat of formation + Delta-G solvation = -38.165579 kcal Electronic energy + Delta-G solvation = -24241.463525 eV Core-core repulsion = 21037.974426 eV Total energy + Delta-G solvation = -3203.489099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.42809 -38.57571 -35.26701 -33.95278 -33.15987 -32.20195 -30.75654 -28.46389 -26.82174 -26.75541 -25.53067 -23.56656 -22.62176 -21.34422 -20.03807 -19.41068 -18.39822 -16.83579 -16.03710 -15.65470 -15.31362 -15.16450 -14.77321 -14.15033 -13.87449 -13.61539 -13.57934 -13.45711 -12.96405 -12.70319 -12.63425 -12.32573 -12.00092 -11.73143 -11.61577 -11.44547 -11.42554 -11.38830 -11.07097 -10.97236 -10.88918 -10.63920 -10.52904 -10.43508 -10.34646 -9.98714 -9.82147 -9.53086 -9.46158 -9.10190 -8.68376 -8.16385 -6.93173 -5.98961 -3.39875 3.25945 3.36916 3.41532 3.43097 3.97895 4.46216 4.78794 5.12795 5.21800 5.23603 5.30419 5.31423 5.31716 5.41551 5.58522 5.69491 5.75706 5.82546 5.83796 5.94289 5.98127 6.01223 6.04057 6.04521 6.14365 6.19474 6.26312 6.29019 6.33118 6.33970 6.37052 6.45994 6.50590 6.52721 6.58761 6.65009 6.72189 6.84593 6.88655 7.10000 7.25868 7.93203 8.32169 8.36059 8.89227 8.99744 9.66326 10.05271 11.15575 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.006129 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.130602 B = 4567.689203 C = 5597.339067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.511 3.489 5 O -0.568 6.568 6 N -0.696 5.696 7 C 0.136 3.864 8 C 0.163 3.837 9 H 0.035 0.965 10 C -0.131 4.131 11 C -0.096 4.096 12 C -0.085 4.085 13 C -0.127 4.127 14 C -0.139 4.139 15 C 0.139 3.861 16 N -0.601 5.601 17 C -0.258 4.258 18 H 0.094 0.906 19 C 0.029 3.971 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.289 1.289 23 H -0.306 1.306 24 H -0.272 1.272 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.410 0.590 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.022 0.978 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 0.874 8.164 8.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.181 4.181 4 C 0.297 3.703 5 O -0.449 6.449 6 N -0.346 5.346 7 C 0.011 3.989 8 C 0.057 3.943 9 H 0.053 0.947 10 C -0.171 4.171 11 C -0.134 4.134 12 C -0.087 4.087 13 C -0.184 4.184 14 C -0.197 4.197 15 C 0.013 3.987 16 N -0.325 5.325 17 C -0.387 4.387 18 H 0.111 0.889 19 C -0.170 4.170 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.216 1.216 23 H -0.234 1.234 24 H -0.197 1.197 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.247 0.753 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.309 0.147 8.031 8.687 hybrid contribution -0.470 1.713 0.031 1.776 sum 2.839 1.860 8.062 8.747 Atomic orbital electron populations 1.21797 0.96044 1.01359 1.01730 1.21222 0.94704 0.95339 1.03072 1.21666 0.92767 0.99351 1.04302 1.20552 0.90060 0.83713 0.75939 1.90614 1.70726 1.31712 1.51835 1.45958 1.07136 1.08825 1.72731 1.21217 0.80462 0.96380 1.00798 1.20747 0.92183 0.91406 0.89991 0.94723 1.22002 0.96910 0.96972 1.01186 1.21418 0.99023 0.96102 0.96852 1.21040 0.97919 0.94320 0.95391 1.21722 0.98304 1.01318 0.97079 1.21827 1.00092 0.96535 1.01243 1.21426 0.90763 0.87112 0.99372 1.44375 1.49854 1.14266 1.24024 1.18983 1.07512 0.93988 1.18183 0.88886 1.25329 0.97168 0.97134 0.97397 1.69812 1.29396 1.37294 1.18148 0.87064 0.76100 0.86684 0.79403 1.21618 1.23412 1.19666 0.93004 0.92563 0.92874 0.91351 0.91809 0.89835 0.88430 0.75337 0.92728 0.91453 0.92665 0.91174 0.93017 0.92836 0.93388 0.94509 0.91087 0.93279 0.93215 0.92961 0.91000 0.95992 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.43 16 2 C -0.11 -1.53 5.22 -26.74 -0.14 -1.67 16 3 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 4 C 0.51 9.81 7.83 -10.98 -0.09 9.72 16 5 O -0.57 -12.54 15.98 5.56 0.09 -12.45 16 6 N -0.70 -13.18 3.84 -60.29 -0.23 -13.41 16 7 C 0.14 2.50 4.43 -4.04 -0.02 2.49 16 8 C 0.16 2.91 3.01 -67.60 -0.20 2.71 16 9 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 10 C -0.13 -2.02 5.03 -26.61 -0.13 -2.15 16 11 C -0.10 -1.42 4.71 -26.69 -0.13 -1.55 16 12 C -0.08 -1.41 0.77 -154.39 -0.12 -1.53 16 13 C -0.13 -2.17 7.99 37.16 0.30 -1.87 16 14 C -0.14 -2.01 8.48 37.16 0.32 -1.69 16 15 C 0.14 2.80 2.88 -3.71 -0.01 2.79 16 16 N -0.60 -12.61 2.15 -164.78 -0.35 -12.96 16 17 C -0.26 -6.37 7.41 -15.06 -0.11 -6.48 16 18 H 0.09 2.55 6.05 -52.49 -0.32 2.24 16 19 C 0.03 0.77 5.26 -17.43 -0.09 0.68 16 20 N -0.90 -25.92 13.97 55.49 0.78 -25.14 16 21 Si 0.88 20.87 24.33 -169.99 -4.14 16.74 16 22 H -0.29 -6.84 6.57 56.52 0.37 -6.47 16 23 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.41 7.84 7.39 -40.82 -0.30 7.53 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.41 7.42 -51.93 -0.39 1.02 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.14 6.33 -51.93 -0.33 0.82 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.63 4.73 -51.93 -0.25 1.39 16 46 H 0.02 0.45 7.02 -51.93 -0.36 0.09 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -28.80 350.85 -7.41 -36.21 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.62 Total: 8.09 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.22 Total: -2.36 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.19 Total: -51.51 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.14 Total: 16.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.80 -7.41 -36.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098861886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.953 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds