Wall clock time and date at job start Tue Mar 31 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47489 * 2 1 4 4 C 1.50701 * 109.47138 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00231 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99794 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99890 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47235 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.70478 * 299.92888 * 8 7 6 10 10 C 1.52764 * 109.51292 * 179.81059 * 8 7 6 11 11 C 1.53039 * 109.38479 * 185.70549 * 10 8 7 12 12 C 1.53041 * 109.53761 * 61.23988 * 11 10 8 13 13 C 1.52998 * 109.49387 * 178.68430 * 12 11 10 14 14 C 1.52995 * 109.52397 * 58.60520 * 12 11 10 15 15 C 1.53193 * 109.31271 * 298.63213 * 12 11 10 16 16 N 1.46924 * 108.77318 * 54.63601 * 15 12 11 17 17 C 1.36939 * 120.63148 * 126.36544 * 16 15 12 18 18 H 1.07995 * 120.00601 * 211.61038 * 17 16 15 19 19 C 1.38817 * 119.99426 * 31.61278 * 17 16 15 20 20 N 1.31615 * 120.00395 * 11.91889 * 19 17 16 21 21 Si 1.86804 * 119.99475 * 191.91519 * 19 17 16 22 22 H 1.48500 * 109.46777 * 269.99778 * 21 19 17 23 23 H 1.48495 * 109.47208 * 30.00341 * 21 19 17 24 24 H 1.48500 * 109.46769 * 150.00208 * 21 19 17 25 25 H 1.09008 * 109.47044 * 300.00622 * 1 2 3 26 26 H 1.09006 * 109.47065 * 59.99714 * 1 2 3 27 27 H 1.08996 * 109.47427 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47338 * 239.99831 * 2 1 3 29 29 H 1.09006 * 109.47065 * 120.00286 * 2 1 3 30 30 H 1.08998 * 109.47489 * 59.99683 * 3 2 1 31 31 H 1.08997 * 109.47304 * 299.99977 * 3 2 1 32 32 H 0.97001 * 120.00331 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47588 * 59.99533 * 7 6 4 34 34 H 1.08997 * 109.46833 * 299.99815 * 7 6 4 35 35 H 1.08999 * 109.56162 * 65.66831 * 10 8 7 36 36 H 1.08995 * 109.35937 * 305.61888 * 10 8 7 37 37 H 1.09006 * 109.45898 * 301.22072 * 11 10 8 38 38 H 1.09006 * 109.45867 * 181.26497 * 11 10 8 39 39 H 1.09001 * 109.47202 * 179.84003 * 13 12 11 40 40 H 1.08996 * 109.47337 * 299.83496 * 13 12 11 41 41 H 1.08998 * 109.47674 * 59.83973 * 13 12 11 42 42 H 1.09003 * 109.46862 * 300.14654 * 14 12 11 43 43 H 1.09000 * 109.47239 * 60.14069 * 14 12 11 44 44 H 1.09000 * 109.47202 * 180.14717 * 14 12 11 45 45 H 1.08998 * 109.58555 * 294.85001 * 15 12 11 46 46 H 1.08997 * 109.70358 * 174.49236 * 15 12 11 47 47 H 0.96994 * 120.00464 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4423 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2210 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0014 8 6 6.1960 4.0519 -0.0013 9 1 5.8351 4.5695 -0.8902 10 6 7.7237 4.0529 0.0022 11 6 8.2303 5.4899 0.1459 12 6 7.7422 6.0744 1.4733 13 6 8.2764 7.4994 1.6310 14 6 8.2470 5.2090 2.6296 15 6 6.2104 6.0986 1.4835 16 7 5.7143 4.7447 1.2015 17 6 4.8242 4.1377 2.0468 18 1 4.8396 3.0646 2.1673 19 6 3.9019 4.9018 2.7486 20 7 3.7208 6.1671 2.4347 21 14 2.9179 4.1341 4.1385 22 1 1.6591 3.5622 3.5966 23 1 3.7176 3.0568 4.7749 24 1 2.5947 5.1733 5.1489 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8899 32 1 3.7360 3.4497 0.0001 33 1 6.0486 2.0963 -0.8920 34 1 6.0499 2.0950 0.8879 35 1 8.0911 3.6293 -0.9325 36 1 8.0834 3.4549 0.8394 37 1 7.8498 6.0932 -0.6784 38 1 9.3202 5.4943 0.1260 39 1 7.9262 7.9164 2.5752 40 1 9.3662 7.4817 1.6237 41 1 7.9175 8.1153 0.8064 42 1 7.8671 4.1936 2.5161 43 1 9.3368 5.1920 2.6219 44 1 7.8967 5.6245 3.5744 45 1 5.8508 6.7863 0.7182 46 1 5.8545 6.4218 2.4617 47 1 3.0766 6.7011 2.9254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098861887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:19 Heat of formation + Delta-G solvation = -44.098901 kcal Electronic energy + Delta-G solvation = -24198.910228 eV Core-core repulsion = 20995.163841 eV Total energy + Delta-G solvation = -3203.746387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.32267 -38.40999 -35.15485 -34.01194 -33.17039 -32.11150 -29.99365 -28.41242 -26.69263 -26.58860 -25.48917 -23.42217 -22.26424 -21.37707 -20.09161 -19.44053 -17.89800 -16.83418 -15.92851 -15.70774 -15.27029 -15.13888 -14.19189 -13.97578 -13.85124 -13.58197 -13.44352 -13.27625 -12.99533 -12.69422 -12.49082 -12.17218 -11.89182 -11.57027 -11.48675 -11.34014 -11.26802 -11.14289 -10.98126 -10.86315 -10.77494 -10.58600 -10.51139 -10.41468 -10.11159 -10.06937 -9.79128 -9.46276 -9.32832 -9.11874 -8.57186 -8.15781 -6.63331 -5.84306 -3.31140 3.27878 3.32380 3.39261 3.43184 3.95942 4.41812 5.14596 5.19170 5.23208 5.27094 5.30311 5.45910 5.51185 5.61122 5.69532 5.74287 5.77681 5.87351 5.92011 5.97246 6.04526 6.11890 6.16195 6.19690 6.25658 6.34931 6.36967 6.39531 6.46837 6.48594 6.49410 6.50757 6.54427 6.66490 6.91577 6.95565 7.04070 7.12908 7.26216 7.39239 7.68171 7.79028 8.34542 8.41482 8.96109 9.16568 9.77653 10.36006 11.22319 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017009 B = 0.006175 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.822242 B = 4533.214909 C = 5681.753568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.506 3.494 5 O -0.569 6.569 6 N -0.695 5.695 7 C 0.135 3.865 8 C 0.160 3.840 9 H 0.030 0.970 10 C -0.131 4.131 11 C -0.095 4.095 12 C -0.095 4.095 13 C -0.133 4.133 14 C -0.124 4.124 15 C 0.187 3.813 16 N -0.585 5.585 17 C -0.247 4.247 18 H 0.069 0.931 19 C 0.008 3.992 20 N -0.900 5.900 21 Si 0.891 3.109 22 H -0.286 1.286 23 H -0.280 1.280 24 H -0.290 1.290 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.414 0.586 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.016 0.984 46 H 0.087 0.913 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -2.429 -4.903 5.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.182 4.182 4 C 0.292 3.708 5 O -0.450 6.450 6 N -0.346 5.346 7 C 0.011 3.989 8 C 0.053 3.947 9 H 0.048 0.952 10 C -0.170 4.170 11 C -0.133 4.133 12 C -0.097 4.097 13 C -0.191 4.191 14 C -0.181 4.181 15 C 0.062 3.938 16 N -0.308 5.308 17 C -0.376 4.376 18 H 0.087 0.913 19 C -0.191 4.191 20 N -0.544 5.544 21 Si 0.721 3.279 22 H -0.213 1.213 23 H -0.205 1.205 24 H -0.217 1.217 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.252 0.748 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.105 0.895 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.841 -3.029 -4.822 5.985 hybrid contribution -0.738 0.262 0.876 1.175 sum 1.103 -2.768 -3.947 4.945 Atomic orbital electron populations 1.21803 0.96006 1.01410 1.01764 1.21235 0.94735 0.95317 1.03131 1.21677 0.92898 0.99301 1.04312 1.20582 0.90031 0.83866 0.76325 1.90615 1.70694 1.31741 1.51946 1.46048 1.07384 1.08910 1.72258 1.21250 0.80212 0.97033 1.00439 1.20641 0.91984 0.90946 0.91083 0.95240 1.21938 0.97425 0.97079 1.00578 1.21409 0.98474 0.95983 0.97434 1.21247 1.00361 0.93722 0.94360 1.21757 0.99263 0.96876 1.01225 1.21698 0.97817 1.01102 0.97509 1.20813 0.86040 0.85559 1.01401 1.44020 1.49687 1.14958 1.22145 1.19173 1.08132 0.92147 1.18180 0.91331 1.25066 0.97367 0.96299 1.00329 1.69978 1.36404 1.06896 1.41133 0.86472 0.80334 0.78438 0.82656 1.21322 1.20543 1.21660 0.92711 0.92837 0.92809 0.91611 0.91476 0.88914 0.89506 0.74797 0.92974 0.91815 0.93156 0.91677 0.92970 0.93688 0.93052 0.93995 0.93355 0.91634 0.95078 0.93654 0.96572 0.89502 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.11 -1.49 5.22 -26.74 -0.14 -1.63 16 3 C -0.14 -2.16 5.70 -27.88 -0.16 -2.32 16 4 C 0.51 9.51 7.83 -10.98 -0.09 9.42 16 5 O -0.57 -12.29 15.98 5.56 0.09 -12.20 16 6 N -0.70 -13.18 3.85 -60.30 -0.23 -13.41 16 7 C 0.13 2.54 4.42 -4.04 -0.02 2.53 16 8 C 0.16 3.04 2.99 -67.82 -0.20 2.83 16 9 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.13 -2.16 5.00 -26.83 -0.13 -2.30 16 11 C -0.10 -1.55 4.71 -26.69 -0.13 -1.67 16 12 C -0.10 -1.69 0.77 -154.39 -0.12 -1.81 16 13 C -0.13 -2.10 8.48 37.16 0.32 -1.78 16 14 C -0.12 -2.21 7.99 37.16 0.30 -1.91 16 15 C 0.19 4.08 3.94 -3.71 -0.01 4.07 16 16 N -0.58 -12.83 2.42 -165.03 -0.40 -13.23 16 17 C -0.25 -5.96 6.97 -15.06 -0.10 -6.06 16 18 H 0.07 1.73 5.86 -52.49 -0.31 1.42 16 19 C 0.01 0.21 5.02 -17.43 -0.09 0.13 16 20 N -0.90 -23.82 11.14 55.49 0.62 -23.21 16 21 Si 0.89 20.69 29.57 -169.99 -5.03 15.67 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.41 8.13 7.40 -40.82 -0.30 7.82 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.33 7.41 -51.93 -0.39 0.94 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.12 6.33 -51.93 -0.33 0.80 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.28 5.97 -51.93 -0.31 0.97 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 2.17 6.16 -51.93 -0.32 1.85 16 47 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -26.96 357.17 -8.47 -35.44 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.69 Total: 7.45 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.21 Total: -1.88 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.01 Total: -49.85 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.96 -8.47 -35.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098861887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.663 kcal (2) G-P(sol) polarization free energy of solvation -26.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds