Wall clock time and date at job start Tue Mar 31 2020 05:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47194 * 2 1 4 4 C 1.50700 * 109.47126 * 120.00286 * 2 1 3 5 5 O 1.21284 * 120.00280 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00173 * 180.02562 * 4 2 1 7 7 C 1.46499 * 120.00022 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.46848 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.58457 * 60.62120 * 8 7 6 10 10 C 1.53191 * 109.70074 * 180.97434 * 8 7 6 11 11 C 1.53050 * 109.31159 * 174.49390 * 10 8 7 12 12 C 1.53037 * 109.53411 * 298.63656 * 11 10 8 13 13 C 1.53003 * 109.49675 * 181.31828 * 12 11 10 14 14 C 1.53004 * 109.49825 * 301.37792 * 12 11 10 15 15 C 1.52755 * 109.38742 * 61.24087 * 12 11 10 16 16 N 1.46926 * 109.58824 * 300.33481 * 8 7 6 17 17 C 1.36938 * 120.62790 * 6.44061 * 16 8 7 18 18 H 1.07999 * 120.00204 * 304.94062 * 17 16 8 19 19 C 1.38818 * 119.99707 * 124.94618 * 17 16 8 20 20 N 1.31620 * 119.99347 * 156.40349 * 19 17 16 21 21 Si 1.86798 * 120.00147 * 336.40170 * 19 17 16 22 22 H 1.48495 * 109.47067 * 275.67191 * 21 19 17 23 23 H 1.48498 * 109.46928 * 35.66958 * 21 19 17 24 24 H 1.48496 * 109.47165 * 155.67356 * 21 19 17 25 25 H 1.09003 * 109.46679 * 299.99936 * 1 2 3 26 26 H 1.09003 * 109.46979 * 59.99807 * 1 2 3 27 27 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47145 * 239.99906 * 2 1 3 29 29 H 1.09000 * 109.46959 * 180.02562 * 3 2 1 30 30 H 1.08989 * 109.47225 * 299.99926 * 3 2 1 31 31 H 1.09003 * 109.47255 * 60.00416 * 3 2 1 32 32 H 0.97000 * 119.99753 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.47415 * 60.00172 * 7 6 4 34 34 H 1.09003 * 109.47172 * 299.99289 * 7 6 4 35 35 H 1.09004 * 109.50147 * 294.44101 * 10 8 7 36 36 H 1.08995 * 109.49763 * 54.51223 * 10 8 7 37 37 H 1.08999 * 109.45824 * 58.65371 * 11 10 8 38 38 H 1.08995 * 109.45774 * 178.61858 * 11 10 8 39 39 H 1.09000 * 109.47143 * 59.99651 * 13 12 11 40 40 H 1.08994 * 109.47311 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.46670 * 299.99856 * 13 12 11 42 42 H 1.08997 * 109.46788 * 60.00709 * 14 12 11 43 43 H 1.09001 * 109.47012 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.47276 * 300.00608 * 14 12 11 45 45 H 1.08998 * 109.51081 * 185.70651 * 15 12 11 46 46 H 1.08997 * 109.43245 * 65.41879 * 15 12 11 47 47 H 0.97002 * 119.99132 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2442 -1.1710 2.0290 6 7 3.3574 -0.8332 1.4440 7 6 3.8457 -1.5243 2.6398 8 6 5.3758 -1.5242 2.6399 9 1 5.7410 -0.4973 2.6515 10 6 5.8922 -2.2670 3.8761 11 6 7.4164 -2.3815 3.7978 12 6 7.8061 -3.1839 2.5542 13 6 9.3283 -3.3258 2.4944 14 6 7.1660 -4.5720 2.6208 15 6 7.3107 -2.4565 1.3056 16 7 5.8684 -2.2087 1.4368 17 6 4.9992 -2.6130 0.4589 18 1 4.1655 -3.2526 0.7082 19 6 5.1899 -2.2009 -0.8529 20 7 4.6906 -2.9085 -1.8441 21 14 6.1551 -0.6423 -1.2114 22 1 5.2534 0.5330 -1.1083 23 1 7.2594 -0.5067 -0.2278 24 1 6.7198 -0.7142 -2.5829 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.9877 -0.4645 0.8055 33 1 3.4829 -2.5521 2.6391 34 1 3.4820 -1.0112 3.5301 35 1 5.6146 -1.7155 4.7744 36 1 5.4534 -3.2641 3.9111 37 1 7.8528 -1.3845 3.7381 38 1 7.7887 -2.8881 4.6881 39 1 9.6802 -3.8445 3.3862 40 1 9.6054 -3.8977 1.6088 41 1 9.7838 -2.3368 2.4458 42 1 6.0816 -4.4704 2.6622 43 1 7.4442 -5.1432 1.7351 44 1 7.5166 -5.0914 3.5127 45 1 7.4969 -3.0737 0.4268 46 1 7.8370 -1.5072 1.2063 47 1 4.8242 -2.6207 -2.7607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098904286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:22 Heat of formation + Delta-G solvation = -42.876033 kcal Electronic energy + Delta-G solvation = -24674.465454 eV Core-core repulsion = 21470.772094 eV Total energy + Delta-G solvation = -3203.693359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.42317 -38.59306 -35.18997 -33.95520 -33.04717 -32.09640 -30.80309 -27.68732 -26.76229 -26.71026 -25.55562 -24.04106 -22.43473 -21.93927 -20.16269 -19.00970 -18.25392 -16.78651 -16.22123 -15.40090 -15.25850 -14.97569 -14.41232 -14.11471 -13.89880 -13.51900 -13.37378 -13.36032 -12.89705 -12.64979 -12.46830 -12.34245 -12.02129 -11.81915 -11.61812 -11.48973 -11.45983 -11.32672 -11.20814 -10.89304 -10.78750 -10.71913 -10.64137 -10.58175 -10.35670 -9.93571 -9.74430 -9.69802 -9.51385 -8.99043 -8.56809 -8.09709 -6.51137 -6.12643 -3.70478 3.19038 3.34805 3.39487 3.42172 4.03349 4.41073 4.85664 5.11992 5.19155 5.27618 5.32696 5.34721 5.36263 5.39168 5.63413 5.75032 5.83710 5.89172 5.91331 6.00751 6.02276 6.04651 6.09282 6.11544 6.19127 6.22078 6.29930 6.34212 6.36051 6.39246 6.42728 6.48353 6.56867 6.57646 6.63923 6.76692 6.78404 6.90563 6.97618 7.13208 7.33096 7.99741 8.40746 8.48376 8.92795 9.04421 9.56262 10.13214 10.99983 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.006933 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.266317 B = 4037.421930 C = 4828.204770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 C -0.142 4.142 4 C 0.516 3.484 5 O -0.568 6.568 6 N -0.690 5.690 7 C 0.139 3.861 8 C 0.153 3.847 9 H 0.031 0.969 10 C -0.130 4.130 11 C -0.096 4.096 12 C -0.087 4.087 13 C -0.137 4.137 14 C -0.126 4.126 15 C 0.154 3.846 16 N -0.597 5.597 17 C -0.265 4.265 18 H 0.070 0.930 19 C 0.055 3.945 20 N -0.884 5.884 21 Si 0.840 3.160 22 H -0.282 1.282 23 H -0.255 1.255 24 H -0.295 1.295 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.406 0.594 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.023 0.977 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 5.121 6.249 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C -0.200 4.200 4 C 0.302 3.698 5 O -0.448 6.448 6 N -0.340 5.340 7 C 0.015 3.985 8 C 0.047 3.953 9 H 0.049 0.951 10 C -0.169 4.169 11 C -0.134 4.134 12 C -0.089 4.089 13 C -0.195 4.195 14 C -0.183 4.183 15 C 0.029 3.971 16 N -0.321 5.321 17 C -0.394 4.394 18 H 0.088 0.912 19 C -0.148 4.148 20 N -0.522 5.522 21 Si 0.667 3.333 22 H -0.209 1.209 23 H -0.180 1.180 24 H -0.222 1.222 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.243 0.757 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.130 4.762 6.605 8.417 hybrid contribution 1.013 0.952 -0.819 1.614 sum 3.143 5.714 5.786 8.718 Atomic orbital electron populations 1.21544 0.93137 1.02527 1.01141 1.21269 0.97696 0.96934 0.98109 1.21771 1.01348 0.94782 1.02074 1.20420 0.82558 0.79795 0.87066 1.90599 1.55772 1.50734 1.47744 1.45925 1.06516 1.56384 1.25156 1.21163 0.93390 0.97527 0.86408 1.20933 0.91627 0.94301 0.88407 0.95117 1.21977 0.95960 1.01387 0.97570 1.21411 0.95774 0.99264 0.96910 1.21001 0.93965 0.96521 0.97380 1.21812 0.95857 1.00869 1.00984 1.21719 1.02042 0.94946 0.99589 1.21321 0.84832 0.96115 0.94839 1.44258 1.02286 1.66538 1.19062 1.18497 1.09105 1.25841 0.85994 0.91238 1.25904 0.95972 0.96835 0.96120 1.69920 1.46172 1.36955 0.99164 0.87434 0.81803 0.86303 0.77747 1.20851 1.17984 1.22180 0.92428 0.92719 0.92067 0.88220 0.92348 0.91921 0.92433 0.75677 0.91512 0.92932 0.92883 0.91300 0.92920 0.93192 0.93449 0.92936 0.93343 0.91284 0.93402 0.94721 0.91760 0.95897 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.48 37.16 0.32 -1.61 16 2 C -0.12 -2.06 3.26 -91.77 -0.30 -2.35 16 3 C -0.14 -2.08 9.09 37.16 0.34 -1.75 16 4 C 0.52 10.56 7.15 -10.99 -0.08 10.48 16 5 O -0.57 -13.00 15.98 5.55 0.09 -12.91 16 6 N -0.69 -14.03 4.05 -60.29 -0.24 -14.27 16 7 C 0.14 2.69 4.54 -4.04 -0.02 2.67 16 8 C 0.15 2.82 3.01 -67.60 -0.20 2.61 16 9 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 10 C -0.13 -2.04 5.03 -26.61 -0.13 -2.17 16 11 C -0.10 -1.43 4.71 -26.69 -0.13 -1.55 16 12 C -0.09 -1.41 0.77 -154.61 -0.12 -1.53 16 13 C -0.14 -1.92 8.48 37.16 0.32 -1.60 16 14 C -0.13 -2.10 7.98 37.16 0.30 -1.80 16 15 C 0.15 3.04 3.35 -3.94 -0.01 3.03 16 16 N -0.60 -12.54 1.60 -165.04 -0.26 -12.80 16 17 C -0.27 -6.54 6.36 -15.06 -0.10 -6.64 16 18 H 0.07 1.98 7.39 -52.49 -0.39 1.60 16 19 C 0.06 1.41 5.03 -17.43 -0.09 1.33 16 20 N -0.88 -24.71 13.97 55.49 0.78 -23.93 16 21 Si 0.84 19.32 26.39 -169.99 -4.49 14.84 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.26 -5.68 5.08 56.52 0.29 -5.39 16 24 H -0.30 -7.11 7.11 56.52 0.40 -6.70 16 25 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 28 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.06 0.91 7.56 -51.93 -0.39 0.51 16 30 H 0.06 0.78 8.14 -51.94 -0.42 0.36 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.41 8.48 5.21 -40.82 -0.21 8.27 16 33 H 0.07 1.43 7.56 -51.93 -0.39 1.04 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.14 6.34 -51.93 -0.33 0.81 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.29 5.98 -51.93 -0.31 0.98 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.40 7.75 -51.93 -0.40 1.00 16 46 H 0.02 0.47 6.55 -51.93 -0.34 0.13 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -27.82 351.38 -7.52 -35.34 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.78 Total: 9.32 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 0.09 Total: -0.89 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.27 Total: -51.00 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.49 Total: 14.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.82 -7.52 -35.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098904286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.533 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds