Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47194 * 2 1 4 4 C 1.50700 * 109.47126 * 120.00286 * 2 1 3 5 5 O 1.21284 * 120.00280 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00173 * 180.02562 * 4 2 1 7 7 C 1.46499 * 120.00022 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.46848 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.58457 * 60.62120 * 8 7 6 10 10 C 1.53191 * 109.70074 * 180.97434 * 8 7 6 11 11 C 1.53050 * 109.31159 * 174.49390 * 10 8 7 12 12 C 1.53037 * 109.53411 * 298.63656 * 11 10 8 13 13 C 1.53003 * 109.49675 * 181.31828 * 12 11 10 14 14 C 1.53004 * 109.49825 * 301.37792 * 12 11 10 15 15 C 1.52755 * 109.38742 * 61.24087 * 12 11 10 16 16 N 1.46926 * 109.58824 * 300.33481 * 8 7 6 17 17 C 1.36938 * 120.62790 * 6.44061 * 16 8 7 18 18 H 1.07999 * 120.00204 * 304.94062 * 17 16 8 19 19 C 1.38818 * 119.99707 * 124.94618 * 17 16 8 20 20 N 1.31620 * 119.99347 * 156.40349 * 19 17 16 21 21 Si 1.86798 * 120.00147 * 336.40170 * 19 17 16 22 22 H 1.48495 * 109.47067 * 275.67191 * 21 19 17 23 23 H 1.48498 * 109.46928 * 35.66958 * 21 19 17 24 24 H 1.48496 * 109.47165 * 155.67356 * 21 19 17 25 25 H 1.09003 * 109.46679 * 299.99936 * 1 2 3 26 26 H 1.09003 * 109.46979 * 59.99807 * 1 2 3 27 27 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47145 * 239.99906 * 2 1 3 29 29 H 1.09000 * 109.46959 * 180.02562 * 3 2 1 30 30 H 1.08989 * 109.47225 * 299.99926 * 3 2 1 31 31 H 1.09003 * 109.47255 * 60.00416 * 3 2 1 32 32 H 0.97000 * 119.99753 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.47415 * 60.00172 * 7 6 4 34 34 H 1.09003 * 109.47172 * 299.99289 * 7 6 4 35 35 H 1.09004 * 109.50147 * 294.44101 * 10 8 7 36 36 H 1.08995 * 109.49763 * 54.51223 * 10 8 7 37 37 H 1.08999 * 109.45824 * 58.65371 * 11 10 8 38 38 H 1.08995 * 109.45774 * 178.61858 * 11 10 8 39 39 H 1.09000 * 109.47143 * 59.99651 * 13 12 11 40 40 H 1.08994 * 109.47311 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.46670 * 299.99856 * 13 12 11 42 42 H 1.08997 * 109.46788 * 60.00709 * 14 12 11 43 43 H 1.09001 * 109.47012 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.47276 * 300.00608 * 14 12 11 45 45 H 1.08998 * 109.51081 * 185.70651 * 15 12 11 46 46 H 1.08997 * 109.43245 * 65.41879 * 15 12 11 47 47 H 0.97002 * 119.99132 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2442 -1.1710 2.0290 6 7 3.3574 -0.8332 1.4440 7 6 3.8457 -1.5243 2.6398 8 6 5.3758 -1.5242 2.6399 9 1 5.7410 -0.4973 2.6515 10 6 5.8922 -2.2670 3.8761 11 6 7.4164 -2.3815 3.7978 12 6 7.8061 -3.1839 2.5542 13 6 9.3283 -3.3258 2.4944 14 6 7.1660 -4.5720 2.6208 15 6 7.3107 -2.4565 1.3056 16 7 5.8684 -2.2087 1.4368 17 6 4.9992 -2.6130 0.4589 18 1 4.1655 -3.2526 0.7082 19 6 5.1899 -2.2009 -0.8529 20 7 4.6906 -2.9085 -1.8441 21 14 6.1551 -0.6423 -1.2114 22 1 5.2534 0.5330 -1.1083 23 1 7.2594 -0.5067 -0.2278 24 1 6.7198 -0.7142 -2.5829 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.9877 -0.4645 0.8055 33 1 3.4829 -2.5521 2.6391 34 1 3.4820 -1.0112 3.5301 35 1 5.6146 -1.7155 4.7744 36 1 5.4534 -3.2641 3.9111 37 1 7.8528 -1.3845 3.7381 38 1 7.7887 -2.8881 4.6881 39 1 9.6802 -3.8445 3.3862 40 1 9.6054 -3.8977 1.6088 41 1 9.7838 -2.3368 2.4458 42 1 6.0816 -4.4704 2.6622 43 1 7.4442 -5.1432 1.7351 44 1 7.5166 -5.0914 3.5127 45 1 7.4969 -3.0737 0.4268 46 1 7.8370 -1.5072 1.2063 47 1 4.8242 -2.6207 -2.7607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098904286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = -58.559331 kcal Electronic energy + Delta-G solvation = -24675.145532 eV Core-core repulsion = 21470.772094 eV Total energy + Delta-G solvation = -3204.373438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00361 -40.09097 -36.71972 -35.38446 -34.86184 -33.64950 -32.50001 -29.08271 -28.06251 -27.93650 -27.30508 -25.50202 -24.06033 -23.31814 -21.78063 -20.56407 -19.75817 -18.45979 -17.85104 -17.05084 -16.81846 -16.65953 -15.97155 -15.52126 -15.37867 -15.02441 -14.81558 -14.78160 -14.56080 -14.29972 -13.85946 -13.73506 -13.30248 -13.17985 -12.98488 -12.90473 -12.87043 -12.77359 -12.60297 -12.58712 -12.25152 -12.12454 -12.07102 -11.97978 -11.95807 -11.48271 -11.31642 -11.10501 -10.96404 -10.60629 -10.51732 -9.79899 -8.31810 -8.12275 -5.71231 1.34504 1.44351 1.53399 1.77799 2.46897 2.49582 3.05681 3.38920 3.80884 3.93038 3.97576 4.00207 4.06358 4.10580 4.28227 4.37335 4.47539 4.50280 4.62496 4.73205 4.74871 4.79177 4.81253 4.87728 4.89765 4.92264 5.01448 5.05565 5.07056 5.09966 5.13645 5.15172 5.21964 5.23520 5.30801 5.31805 5.47937 5.49901 5.58446 5.71175 5.76784 6.02472 6.40697 6.74870 7.11226 7.39686 7.62787 8.21827 9.01848 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.006933 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.266317 B = 4037.421930 C = 4828.204770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.506 3.494 5 O -0.598 6.598 6 N -0.692 5.692 7 C 0.141 3.859 8 C 0.154 3.846 9 H 0.046 0.954 10 C -0.125 4.125 11 C -0.091 4.091 12 C -0.085 4.085 13 C -0.132 4.132 14 C -0.120 4.120 15 C 0.153 3.847 16 N -0.605 5.605 17 C -0.238 4.238 18 H 0.017 0.983 19 C 0.012 3.988 20 N -0.936 5.936 21 Si 0.894 3.106 22 H -0.264 1.264 23 H -0.239 1.239 24 H -0.309 1.309 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.404 0.596 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.030 0.970 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.028 0.972 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 7.380 8.035 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C -0.193 4.193 4 C 0.293 3.707 5 O -0.480 6.480 6 N -0.341 5.341 7 C 0.017 3.983 8 C 0.048 3.952 9 H 0.063 0.937 10 C -0.164 4.164 11 C -0.128 4.128 12 C -0.087 4.087 13 C -0.190 4.190 14 C -0.177 4.177 15 C 0.029 3.971 16 N -0.330 5.330 17 C -0.368 4.368 18 H 0.035 0.965 19 C -0.187 4.187 20 N -0.577 5.577 21 Si 0.720 3.280 22 H -0.190 1.190 23 H -0.163 1.163 24 H -0.237 1.237 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.240 0.760 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.825 7.042 8.431 11.632 hybrid contribution 0.458 0.130 -1.319 1.402 sum 4.283 7.172 7.112 10.971 Atomic orbital electron populations 1.21530 0.91596 1.01822 1.02856 1.21341 0.99039 0.98271 0.95429 1.21759 1.00676 0.92842 1.04064 1.21099 0.82348 0.79468 0.87774 1.90570 1.56342 1.52019 1.49114 1.46009 1.06637 1.56115 1.25334 1.21199 0.94358 0.95867 0.86911 1.21076 0.90724 0.95058 0.88297 0.93657 1.21938 0.96830 1.00610 0.97050 1.21404 0.94711 0.99868 0.96849 1.20957 0.95684 0.95656 0.96355 1.21759 0.93586 1.01786 1.01861 1.21647 1.00248 0.95735 1.00078 1.21312 0.83861 0.96186 0.95782 1.44302 1.02466 1.67054 1.19186 1.18016 1.07922 1.23970 0.86870 0.96501 1.26336 0.97438 0.99198 0.95744 1.70051 1.49258 1.38918 0.99476 0.86559 0.81226 0.83263 0.76929 1.18973 1.16309 1.23721 0.92085 0.89538 0.94030 0.89884 0.93318 0.89237 0.91167 0.75961 0.94769 0.91003 0.90009 0.92668 0.91751 0.90540 0.91200 0.93556 0.92274 0.94146 0.95057 0.92046 0.94759 0.95452 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.48 71.98 0.61 -2.99 16 2 C -0.12 -4.10 3.26 -11.54 -0.04 -4.14 16 3 C -0.14 -3.70 9.09 71.98 0.65 -3.04 16 4 C 0.51 21.08 7.15 87.66 0.63 21.71 16 5 O -0.60 -28.03 15.98 -3.04 -0.05 -28.08 16 6 N -0.69 -28.48 4.05 -463.05 -1.87 -30.36 16 7 C 0.14 5.47 4.54 86.38 0.39 5.86 16 8 C 0.15 5.45 3.01 44.98 0.14 5.58 16 9 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 10 C -0.13 -3.61 5.03 30.67 0.15 -3.46 16 11 C -0.09 -2.34 4.71 30.62 0.14 -2.20 16 12 C -0.08 -2.57 0.77 -52.25 -0.04 -2.61 16 13 C -0.13 -3.25 8.48 71.98 0.61 -2.64 16 14 C -0.12 -3.90 7.98 71.98 0.57 -3.33 16 15 C 0.15 5.90 3.35 86.22 0.29 6.19 16 16 N -0.60 -25.43 1.60 -676.06 -1.08 -26.51 16 17 C -0.24 -12.20 6.36 84.03 0.53 -11.66 16 18 H 0.02 1.06 7.39 -2.91 -0.02 1.04 16 19 C 0.01 0.63 5.03 84.86 0.43 1.06 16 20 N -0.94 -54.79 13.97 21.65 0.30 -54.49 16 21 Si 0.89 40.06 26.39 68.60 1.81 41.87 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.24 -9.98 5.08 99.48 0.51 -9.48 16 24 H -0.31 -14.61 7.11 99.48 0.71 -13.91 16 25 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.38 8.10 -2.39 -0.02 1.36 16 28 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.05 1.41 7.56 -2.39 -0.02 1.39 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.40 16.85 5.21 -92.71 -0.48 16.37 16 33 H 0.03 1.54 7.56 -2.39 -0.02 1.52 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.76 6.34 -2.39 -0.02 1.75 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.04 1.53 5.98 -2.39 -0.01 1.52 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.03 1.50 7.75 -2.39 -0.02 1.48 16 46 H 0.03 1.04 6.55 -2.39 -0.02 1.03 16 47 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -63.78 351.38 4.42 -59.36 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.23 Total: 33.87 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.08 Total: 4.34 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -2.66 Total: -111.36 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.81 Total: 41.87 kcal Total: -63.78 4.42 -59.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098904286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.801 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds