Wall clock time and date at job start Tue Mar 31 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46798 * 2 1 4 4 C 1.50695 * 109.47047 * 120.00210 * 2 1 3 5 5 O 1.21278 * 120.00268 * 359.97438 * 4 2 1 6 6 N 1.34779 * 119.99621 * 179.97438 * 4 2 1 7 7 C 1.46504 * 119.99651 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46868 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.69853 * 299.74181 * 8 7 6 10 10 C 1.53198 * 109.58549 * 179.39028 * 8 7 6 11 11 C 1.53045 * 109.31164 * 185.57506 * 10 8 7 12 12 C 1.53038 * 109.53575 * 61.36302 * 11 10 8 13 13 C 1.53001 * 109.49876 * 58.58555 * 12 11 10 14 14 C 1.53003 * 109.49427 * 178.68529 * 12 11 10 15 15 C 1.53627 * 109.24488 * 298.50923 * 12 11 10 16 16 N 1.46917 * 109.59012 * 60.09978 * 8 7 6 17 17 C 1.36934 * 120.63203 * 353.36837 * 16 8 7 18 18 H 1.08008 * 119.99530 * 32.47404 * 17 16 8 19 19 C 1.38808 * 120.00537 * 212.46812 * 17 16 8 20 20 N 1.31614 * 119.99975 * 20.49603 * 19 17 16 21 21 Si 1.86799 * 120.00319 * 200.49599 * 19 17 16 22 22 H 1.48504 * 109.47173 * 270.00094 * 21 19 17 23 23 H 1.48503 * 109.47282 * 30.00087 * 21 19 17 24 24 H 1.48501 * 109.47392 * 150.00076 * 21 19 17 25 25 H 1.09002 * 109.46947 * 299.99837 * 1 2 3 26 26 H 1.09000 * 109.46881 * 59.99575 * 1 2 3 27 27 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46947 * 240.00163 * 2 1 3 29 29 H 1.09000 * 109.47751 * 299.99892 * 3 2 1 30 30 H 1.09002 * 109.47238 * 60.00341 * 3 2 1 31 31 H 1.09003 * 109.46805 * 180.02562 * 3 2 1 32 32 H 0.96991 * 120.00129 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.47346 * 59.99698 * 7 6 4 34 34 H 1.09002 * 109.47140 * 299.99757 * 7 6 4 35 35 H 1.08996 * 109.49555 * 305.52538 * 10 8 7 36 36 H 1.09000 * 109.49865 * 65.62138 * 10 8 7 37 37 H 1.08997 * 109.45525 * 181.38429 * 11 10 8 38 38 H 1.08996 * 109.45767 * 301.34358 * 11 10 8 39 39 H 1.09000 * 109.46963 * 59.99955 * 13 12 11 40 40 H 1.08998 * 109.46956 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47076 * 299.99718 * 13 12 11 42 42 H 1.08994 * 109.47031 * 59.99799 * 14 12 11 43 43 H 1.09001 * 109.46919 * 180.02562 * 14 12 11 44 44 H 1.09003 * 109.46568 * 299.99632 * 14 12 11 45 45 H 1.08997 * 109.73504 * 295.12457 * 15 12 11 46 46 H 1.08994 * 109.66507 * 174.55410 * 15 12 11 47 47 H 0.97000 * 120.00239 * 5.57188 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2443 -1.1710 2.0289 6 7 3.3575 -0.8340 1.4434 7 6 3.8458 -1.5252 2.6392 8 6 5.3758 -1.5250 2.6393 9 1 5.7433 -2.0417 1.7526 10 6 5.8894 -2.2339 3.8965 11 6 7.4134 -2.1091 3.9611 12 6 7.8027 -0.6315 4.0465 13 6 7.1589 -0.0045 5.2848 14 6 9.3247 -0.5093 4.1440 15 6 7.3114 0.0953 2.7853 16 7 5.8683 -0.1409 2.6423 17 6 4.9995 0.9091 2.5086 18 1 3.9984 0.8357 2.9072 19 6 5.4054 2.0678 1.8609 20 7 6.4331 2.0368 1.0391 21 14 4.4932 3.6710 2.1555 22 1 3.3912 3.8021 1.1687 23 1 3.9304 3.6751 3.5297 24 1 5.4329 4.8107 2.0022 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 3.9877 -0.4654 0.8049 33 1 3.4822 -2.5527 2.6390 34 1 3.4828 -1.0115 3.5295 35 1 5.4488 -1.7722 4.7801 36 1 5.6119 -3.2873 3.8593 37 1 7.7837 -2.6337 4.8418 38 1 7.8520 -2.5490 3.0654 39 1 7.5070 -0.5240 6.1776 40 1 7.4368 1.0477 5.3454 41 1 6.0747 -0.0908 5.2137 42 1 9.7823 -0.9549 3.2608 43 1 9.6015 0.5432 4.2053 44 1 9.6745 -1.0291 5.0360 45 1 7.8335 -0.2920 1.9104 46 1 7.4990 1.1646 2.8817 47 1 6.8562 1.1910 0.8234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098904287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:26 Heat of formation + Delta-G solvation = -43.055445 kcal Electronic energy + Delta-G solvation = -24735.133998 eV Core-core repulsion = 21531.432859 eV Total energy + Delta-G solvation = -3203.701139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.48079 -38.57402 -35.18204 -33.99264 -33.44676 -32.07873 -29.80479 -27.63065 -26.72176 -26.63734 -25.44999 -24.01968 -22.23867 -21.93269 -20.23754 -19.16172 -17.92861 -17.23866 -16.30058 -15.46756 -15.31239 -14.64794 -14.39111 -14.05102 -13.73296 -13.50988 -13.43273 -13.24792 -12.90680 -12.67258 -12.25236 -12.10899 -11.90951 -11.85598 -11.59726 -11.45906 -11.40502 -11.27377 -10.94595 -10.78024 -10.75604 -10.65639 -10.47795 -10.28340 -10.12877 -9.98255 -9.88659 -9.62499 -9.20040 -9.00886 -8.49811 -8.16094 -6.87323 -6.05147 -3.32724 3.29614 3.42548 3.49518 3.62923 3.95231 4.50227 5.05192 5.17769 5.24680 5.29557 5.36317 5.38788 5.40718 5.53079 5.66274 5.75157 5.83784 5.92223 5.92677 6.02675 6.07983 6.13078 6.14599 6.20211 6.23723 6.25081 6.31769 6.36618 6.38747 6.39348 6.44574 6.51372 6.56145 6.72543 6.74089 6.82445 6.87021 6.94107 7.16060 7.19408 7.25573 8.05162 8.33068 8.55202 8.95397 9.04703 9.78459 10.24902 11.18282 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.007228 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.668150 B = 3872.866180 C = 5034.397499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.510 3.490 5 O -0.569 6.569 6 N -0.691 5.691 7 C 0.138 3.862 8 C 0.162 3.838 9 H 0.028 0.972 10 C -0.130 4.130 11 C -0.095 4.095 12 C -0.089 4.089 13 C -0.124 4.124 14 C -0.136 4.136 15 C 0.167 3.833 16 N -0.592 5.592 17 C -0.338 4.338 18 H 0.060 0.940 19 C -0.016 4.016 20 N -0.918 5.918 21 Si 1.051 2.949 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.289 1.289 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.412 0.588 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.015 0.985 46 H 0.077 0.923 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 -5.270 0.423 5.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 C -0.202 4.202 4 C 0.296 3.704 5 O -0.449 6.449 6 N -0.341 5.341 7 C 0.013 3.987 8 C 0.055 3.945 9 H 0.045 0.955 10 C -0.170 4.170 11 C -0.133 4.133 12 C -0.091 4.091 13 C -0.182 4.182 14 C -0.194 4.194 15 C 0.041 3.959 16 N -0.317 5.317 17 C -0.468 4.468 18 H 0.078 0.922 19 C -0.219 4.219 20 N -0.559 5.559 21 Si 0.881 3.119 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.215 1.215 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.095 0.905 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.636 -3.943 0.635 4.316 hybrid contribution 0.435 -1.415 0.150 1.488 sum -1.201 -5.358 0.785 5.547 Atomic orbital electron populations 1.21573 0.93334 1.02071 1.01584 1.21245 0.97511 0.97850 0.96813 1.21844 1.03033 0.93413 1.01955 1.20554 0.82608 0.79650 0.87577 1.90608 1.55840 1.50564 1.47921 1.45975 1.06541 1.56504 1.25105 1.21194 0.93801 0.94985 0.88684 1.20716 0.91179 0.87766 0.94815 0.95461 1.22003 0.96140 0.98922 0.99920 1.21406 0.95636 0.96084 1.00177 1.21195 0.93919 0.95419 0.98528 1.21691 1.01882 0.99370 0.95217 1.21789 0.95935 1.01212 1.00424 1.21076 0.84034 0.99345 0.91410 1.44121 1.02553 0.99831 1.85159 1.19958 0.97183 0.95229 1.34382 0.92223 1.25672 0.99951 1.01767 0.94470 1.70763 1.24182 1.30005 1.30924 0.83759 0.75597 0.76675 0.75846 1.21492 1.22053 1.21475 0.92168 0.92632 0.92498 0.89374 0.92344 0.92357 0.90457 0.75011 0.93074 0.91810 0.91561 0.93096 0.93443 0.92995 0.94847 0.93562 0.91459 0.93325 0.92951 0.93709 0.96680 0.90481 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.48 37.16 0.32 -1.51 16 2 C -0.11 -1.78 3.26 -91.77 -0.30 -2.08 16 3 C -0.14 -2.39 9.09 37.16 0.34 -2.05 16 4 C 0.51 9.79 7.15 -10.99 -0.08 9.71 16 5 O -0.57 -12.52 15.98 5.56 0.09 -12.43 16 6 N -0.69 -13.28 3.75 -60.29 -0.23 -13.50 16 7 C 0.14 2.63 4.43 -4.04 -0.02 2.61 16 8 C 0.16 3.05 3.01 -67.60 -0.20 2.84 16 9 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 10 C -0.13 -2.15 5.03 -26.61 -0.13 -2.28 16 11 C -0.10 -1.51 4.71 -26.69 -0.13 -1.64 16 12 C -0.09 -1.54 0.77 -154.16 -0.12 -1.66 16 13 C -0.12 -2.19 7.99 37.16 0.30 -1.89 16 14 C -0.14 -2.07 8.48 37.16 0.32 -1.76 16 15 C 0.17 3.52 3.37 -3.48 -0.01 3.51 16 16 N -0.59 -12.75 2.23 -164.51 -0.37 -13.12 16 17 C -0.34 -8.08 6.83 -15.06 -0.10 -8.18 16 18 H 0.06 1.52 5.98 -52.48 -0.31 1.21 16 19 C -0.02 -0.40 4.78 -17.43 -0.08 -0.48 16 20 N -0.92 -24.64 12.52 55.49 0.69 -23.94 16 21 Si 1.05 23.87 29.97 -169.99 -5.09 18.78 16 22 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.44 7.57 -51.93 -0.39 1.05 16 32 H 0.41 8.20 6.80 -40.82 -0.28 7.92 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.02 0.33 7.77 -51.93 -0.40 -0.07 16 46 H 0.08 1.87 6.50 -51.93 -0.34 1.53 16 47 H 0.27 7.27 6.49 -40.82 -0.26 7.00 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -26.82 354.18 -8.05 -34.87 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.57 Total: 8.88 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 0.09 Total: -4.87 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.10 Total: -50.56 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.09 Total: 18.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.82 -8.05 -34.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098904287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.186 kcal (2) G-P(sol) polarization free energy of solvation -26.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds