Wall clock time and date at job start Tue Mar 31 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46798 * 2 1 4 4 C 1.50695 * 109.47047 * 120.00210 * 2 1 3 5 5 O 1.21278 * 120.00268 * 359.97438 * 4 2 1 6 6 N 1.34779 * 119.99621 * 179.97438 * 4 2 1 7 7 C 1.46504 * 119.99651 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46868 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.69853 * 299.74181 * 8 7 6 10 10 C 1.53198 * 109.58549 * 179.39028 * 8 7 6 11 11 C 1.53045 * 109.31164 * 185.57506 * 10 8 7 12 12 C 1.53038 * 109.53575 * 61.36302 * 11 10 8 13 13 C 1.53001 * 109.49876 * 58.58555 * 12 11 10 14 14 C 1.53003 * 109.49427 * 178.68529 * 12 11 10 15 15 C 1.53627 * 109.24488 * 298.50923 * 12 11 10 16 16 N 1.46917 * 109.59012 * 60.09978 * 8 7 6 17 17 C 1.36934 * 120.63203 * 353.36837 * 16 8 7 18 18 H 1.08008 * 119.99530 * 32.47404 * 17 16 8 19 19 C 1.38808 * 120.00537 * 212.46812 * 17 16 8 20 20 N 1.31614 * 119.99975 * 20.49603 * 19 17 16 21 21 Si 1.86799 * 120.00319 * 200.49599 * 19 17 16 22 22 H 1.48504 * 109.47173 * 270.00094 * 21 19 17 23 23 H 1.48503 * 109.47282 * 30.00087 * 21 19 17 24 24 H 1.48501 * 109.47392 * 150.00076 * 21 19 17 25 25 H 1.09002 * 109.46947 * 299.99837 * 1 2 3 26 26 H 1.09000 * 109.46881 * 59.99575 * 1 2 3 27 27 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46947 * 240.00163 * 2 1 3 29 29 H 1.09000 * 109.47751 * 299.99892 * 3 2 1 30 30 H 1.09002 * 109.47238 * 60.00341 * 3 2 1 31 31 H 1.09003 * 109.46805 * 180.02562 * 3 2 1 32 32 H 0.96991 * 120.00129 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.47346 * 59.99698 * 7 6 4 34 34 H 1.09002 * 109.47140 * 299.99757 * 7 6 4 35 35 H 1.08996 * 109.49555 * 305.52538 * 10 8 7 36 36 H 1.09000 * 109.49865 * 65.62138 * 10 8 7 37 37 H 1.08997 * 109.45525 * 181.38429 * 11 10 8 38 38 H 1.08996 * 109.45767 * 301.34358 * 11 10 8 39 39 H 1.09000 * 109.46963 * 59.99955 * 13 12 11 40 40 H 1.08998 * 109.46956 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47076 * 299.99718 * 13 12 11 42 42 H 1.08994 * 109.47031 * 59.99799 * 14 12 11 43 43 H 1.09001 * 109.46919 * 180.02562 * 14 12 11 44 44 H 1.09003 * 109.46568 * 299.99632 * 14 12 11 45 45 H 1.08997 * 109.73504 * 295.12457 * 15 12 11 46 46 H 1.08994 * 109.66507 * 174.55410 * 15 12 11 47 47 H 0.97000 * 120.00239 * 5.57188 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2443 -1.1710 2.0289 6 7 3.3575 -0.8340 1.4434 7 6 3.8458 -1.5252 2.6392 8 6 5.3758 -1.5250 2.6393 9 1 5.7433 -2.0417 1.7526 10 6 5.8894 -2.2339 3.8965 11 6 7.4134 -2.1091 3.9611 12 6 7.8027 -0.6315 4.0465 13 6 7.1589 -0.0045 5.2848 14 6 9.3247 -0.5093 4.1440 15 6 7.3114 0.0953 2.7853 16 7 5.8683 -0.1409 2.6423 17 6 4.9995 0.9091 2.5086 18 1 3.9984 0.8357 2.9072 19 6 5.4054 2.0678 1.8609 20 7 6.4331 2.0368 1.0391 21 14 4.4932 3.6710 2.1555 22 1 3.3912 3.8021 1.1687 23 1 3.9304 3.6751 3.5297 24 1 5.4329 4.8107 2.0022 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 3.9877 -0.4654 0.8049 33 1 3.4822 -2.5527 2.6390 34 1 3.4828 -1.0115 3.5295 35 1 5.4488 -1.7722 4.7801 36 1 5.6119 -3.2873 3.8593 37 1 7.7837 -2.6337 4.8418 38 1 7.8520 -2.5490 3.0654 39 1 7.5070 -0.5240 6.1776 40 1 7.4368 1.0477 5.3454 41 1 6.0747 -0.0908 5.2137 42 1 9.7823 -0.9549 3.2608 43 1 9.6015 0.5432 4.2053 44 1 9.6745 -1.0291 5.0360 45 1 7.8335 -0.2920 1.9104 46 1 7.4990 1.1646 2.8817 47 1 6.8562 1.1910 0.8234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098904287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:25 Heat of formation + Delta-G solvation = -56.734211 kcal Electronic energy + Delta-G solvation = -24735.727154 eV Core-core repulsion = 21531.432859 eV Total energy + Delta-G solvation = -3204.294295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03532 -40.09386 -36.72026 -35.39085 -35.21263 -33.57718 -31.52356 -29.06654 -28.11868 -27.91464 -27.23150 -25.48149 -23.90820 -23.30835 -21.85461 -20.66412 -19.46438 -18.92919 -17.82763 -17.08775 -16.86259 -16.09715 -16.00060 -15.54216 -15.45965 -15.01766 -14.91858 -14.72229 -14.40656 -14.09632 -13.62904 -13.61602 -13.47067 -13.19308 -13.05230 -12.82350 -12.80689 -12.66777 -12.51833 -12.34143 -12.25018 -12.03132 -11.95496 -11.90479 -11.75784 -11.62103 -11.36696 -11.08780 -10.86582 -10.58863 -10.38132 -9.81148 -8.72732 -8.00866 -5.27435 1.56677 1.61714 1.76204 1.77232 2.47007 2.65378 3.34452 3.51799 3.82453 3.91466 3.94263 4.03189 4.08885 4.10704 4.23894 4.33943 4.43063 4.49940 4.58084 4.70343 4.75369 4.77255 4.82816 4.87280 4.89945 4.96537 4.97329 5.00394 5.05038 5.06688 5.09994 5.14679 5.24772 5.28555 5.31876 5.37785 5.42386 5.47166 5.57320 5.67890 5.73262 6.08156 6.56390 6.76598 7.17805 7.39262 7.89848 8.36926 9.19222 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.007228 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.668150 B = 3872.866180 C = 5034.397499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.504 3.496 5 O -0.599 6.599 6 N -0.692 5.692 7 C 0.143 3.857 8 C 0.163 3.837 9 H 0.029 0.971 10 C -0.125 4.125 11 C -0.090 4.090 12 C -0.086 4.086 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.176 3.824 16 N -0.603 5.603 17 C -0.314 4.314 18 H 0.043 0.957 19 C -0.051 4.051 20 N -0.945 5.945 21 Si 1.077 2.923 22 H -0.268 1.268 23 H -0.296 1.296 24 H -0.299 1.299 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.002 0.998 46 H 0.038 0.962 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -6.691 0.454 6.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.128 4.128 3 C -0.197 4.197 4 C 0.291 3.709 5 O -0.482 6.482 6 N -0.341 5.341 7 C 0.018 3.982 8 C 0.057 3.943 9 H 0.047 0.953 10 C -0.164 4.164 11 C -0.128 4.128 12 C -0.088 4.088 13 C -0.175 4.175 14 C -0.188 4.188 15 C 0.051 3.949 16 N -0.327 5.327 17 C -0.444 4.444 18 H 0.061 0.939 19 C -0.250 4.250 20 N -0.588 5.588 21 Si 0.906 3.094 22 H -0.194 1.194 23 H -0.223 1.223 24 H -0.226 1.226 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.703 -5.382 0.672 5.685 hybrid contribution 0.436 -1.015 0.177 1.119 sum -1.267 -6.397 0.849 6.577 Atomic orbital electron populations 1.21561 0.91882 1.02286 1.02354 1.21303 0.98613 0.97047 0.95872 1.21786 1.01309 0.94042 1.02587 1.21239 0.82143 0.79153 0.88331 1.90587 1.56390 1.51959 1.49279 1.46035 1.06783 1.56384 1.24922 1.21150 0.94003 0.95340 0.87698 1.20839 0.90907 0.86329 0.96263 0.95333 1.21950 0.96662 0.99993 0.97818 1.21383 0.94960 0.94740 1.01680 1.21133 0.95408 0.96173 0.96074 1.21611 1.00374 0.98877 0.96601 1.21735 0.94046 1.01120 1.01924 1.20891 0.83682 0.97440 0.92935 1.44244 1.02590 1.00631 1.85274 1.19824 0.96628 0.95725 1.32241 0.93904 1.26295 1.00316 1.03662 0.94692 1.70833 1.25679 1.29331 1.32942 0.83373 0.75376 0.74572 0.76078 1.19408 1.22265 1.22613 0.93764 0.89468 0.92578 0.86860 0.89400 0.93993 0.92975 0.75403 0.91589 0.94395 0.92428 0.90382 0.90671 0.92569 0.92002 0.95150 0.93762 0.92818 0.93899 0.91116 0.98047 0.94324 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 8.48 71.98 0.61 -2.66 16 2 C -0.11 -3.23 3.26 -11.54 -0.04 -3.26 16 3 C -0.14 -4.45 9.09 71.98 0.65 -3.79 16 4 C 0.50 19.20 7.15 87.66 0.63 19.83 16 5 O -0.60 -26.38 15.98 -3.02 -0.05 -26.43 16 6 N -0.69 -26.69 3.75 -463.05 -1.74 -28.43 16 7 C 0.14 5.42 4.43 86.38 0.38 5.80 16 8 C 0.16 6.01 3.01 44.98 0.14 6.14 16 9 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 10 C -0.12 -3.84 5.03 30.68 0.15 -3.69 16 11 C -0.09 -2.59 4.71 30.62 0.14 -2.45 16 12 C -0.09 -2.88 0.77 -51.96 -0.04 -2.92 16 13 C -0.12 -4.01 7.99 71.98 0.58 -3.43 16 14 C -0.13 -3.71 8.48 71.98 0.61 -3.10 16 15 C 0.18 7.52 3.37 86.51 0.29 7.82 16 16 N -0.60 -26.31 2.23 -674.40 -1.50 -27.81 16 17 C -0.31 -15.37 6.83 84.03 0.57 -14.80 16 18 H 0.04 2.25 5.98 -2.91 -0.02 2.24 16 19 C -0.05 -2.64 4.78 84.86 0.41 -2.24 16 20 N -0.94 -52.19 12.52 21.65 0.27 -51.92 16 21 Si 1.08 49.16 29.97 68.60 2.06 51.22 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 25 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.93 7.57 -2.39 -0.02 1.91 16 32 H 0.41 16.43 6.80 -92.72 -0.63 15.80 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.64 7.42 -2.39 -0.02 1.62 16 35 H 0.06 1.90 6.34 -2.39 -0.02 1.88 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 1.70 5.97 -2.39 -0.01 1.69 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.00 0.07 7.77 -2.39 -0.02 0.05 16 46 H 0.04 1.94 6.50 -2.39 -0.02 1.92 16 47 H 0.26 14.47 6.49 -92.71 -0.60 13.87 16 Total: -1.00 -59.58 354.18 4.59 -54.99 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.46 Total: 31.14 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.09 Total: -2.75 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -2.97 Total: -108.16 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.06 Total: 51.22 kcal Total: -59.58 4.59 -54.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098904287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.746 kcal (2) G-P(sol) polarization free energy of solvation -59.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds