Wall clock time and date at job start Tue Mar 31 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47072 * 2 1 4 4 H 1.09000 * 109.47593 * 54.99830 * 3 2 1 5 5 C 1.52999 * 109.47336 * 294.99441 * 3 2 1 6 6 C 1.53004 * 109.46745 * 174.99391 * 3 2 1 7 7 C 1.53002 * 109.47044 * 184.99812 * 6 3 2 8 8 C 1.50697 * 109.47431 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47400 * 300.00979 * 1 2 3 27 27 H 1.09004 * 109.46322 * 60.00133 * 1 2 3 28 28 H 1.09000 * 109.47751 * 239.99351 * 2 1 3 29 29 H 1.09001 * 109.46816 * 119.99801 * 2 1 3 30 30 H 1.08998 * 109.46623 * 300.00485 * 5 3 2 31 31 H 1.09002 * 109.46805 * 60.00148 * 5 3 2 32 32 H 1.08990 * 109.47479 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.47148 * 65.00499 * 6 3 2 34 34 H 1.08995 * 109.47298 * 304.99646 * 6 3 2 35 35 H 1.09005 * 109.47358 * 59.99831 * 7 6 3 36 36 H 1.09006 * 109.47182 * 300.00516 * 7 6 3 37 37 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 39 39 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 40 40 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 41 41 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 42 42 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 43 43 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 44 44 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 45 45 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 46 46 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 47 47 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5648 1.4442 0.1259 7 6 4.0646 2.8849 0.2512 8 6 5.5665 2.8868 0.3746 9 8 6.1771 1.8389 0.3629 10 7 6.2311 4.0528 0.4969 11 6 7.6913 4.0546 0.6163 12 6 8.1910 5.4953 0.7417 13 6 9.7040 5.6027 0.9950 14 6 9.7012 6.7990 0.0288 15 7 10.8624 6.8352 -0.8636 16 6 11.2623 8.0213 -1.4191 17 1 10.7219 8.9300 -1.1990 18 6 12.3629 8.0557 -2.2643 19 7 13.0219 6.9483 -2.5322 20 14 12.9089 9.6738 -3.0215 21 1 12.0075 10.7625 -2.5660 22 1 14.3007 9.9733 -2.5991 23 1 12.8520 9.5717 -4.5019 24 6 8.4492 6.1793 -0.6142 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8898 27 1 -0.3632 0.5139 -0.8901 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0700 1.5874 -2.1491 31 1 0.5490 2.1252 -1.3970 32 1 1.9991 3.1540 -1.3076 33 1 4.0031 0.9835 -0.7595 34 1 3.8570 0.8800 1.0115 35 1 3.6264 3.3458 1.1365 36 1 3.7724 3.4492 -0.6344 37 1 5.7428 4.8908 0.5059 38 1 8.1288 3.5938 -0.2693 39 1 7.9842 3.4903 1.5017 40 1 7.5901 6.0935 1.4267 41 1 10.2699 4.7464 0.6282 42 1 9.9571 5.8706 2.0208 43 1 9.5133 7.7549 0.5179 44 1 11.3480 6.0191 -1.0611 45 1 13.7908 6.9723 -3.1230 46 1 7.6900 6.9124 -0.8866 47 1 8.6728 5.4805 -1.4202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100775691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:27 Heat of formation + Delta-G solvation = -44.449494 kcal Electronic energy + Delta-G solvation = -21532.744460 eV Core-core repulsion = 18328.982870 eV Total energy + Delta-G solvation = -3203.761590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89921 -38.52556 -37.36057 -34.65081 -33.28722 -32.55290 -30.31902 -29.22786 -27.45296 -25.81272 -25.09033 -23.89102 -22.70385 -21.02841 -20.38412 -20.12767 -19.02515 -17.17992 -16.94025 -16.15746 -15.94698 -15.40134 -14.94493 -14.79977 -14.59161 -14.02920 -13.85987 -13.69437 -13.37995 -13.22660 -12.93153 -12.72806 -12.28475 -11.99983 -11.99808 -11.88535 -11.79423 -11.37247 -11.25239 -11.21570 -10.88428 -10.85968 -10.83086 -10.73250 -10.52870 -10.25029 -10.11454 -9.82221 -9.78294 -9.47085 -8.99494 -8.87449 -6.96658 -5.78919 -3.07823 2.64310 3.19304 3.41828 3.47251 3.49743 4.39171 4.49796 4.54815 4.57705 4.79141 4.90575 4.96610 4.99149 5.07966 5.09628 5.21030 5.23296 5.24436 5.36163 5.45487 5.46426 5.51255 5.61673 5.69590 5.72461 5.77242 5.77501 5.83348 5.86383 5.94046 5.95590 6.08984 6.11051 6.16175 6.27068 6.31697 6.36408 6.48301 6.59241 6.82736 7.11410 7.50591 7.68905 8.23204 8.39646 9.50696 10.09210 10.43334 11.43524 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035052 B = 0.002202 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.618458 B =12710.275541 C =13014.913781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.142 4.142 8 C 0.507 3.493 9 O -0.545 6.545 10 N -0.727 5.727 11 C 0.131 3.869 12 C -0.127 4.127 13 C -0.142 4.142 14 C 0.165 3.835 15 N -0.713 5.713 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.160 4.160 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.053 0.947 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.467 -9.412 7.510 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.210 4.210 6 C -0.137 4.137 7 C -0.182 4.182 8 C 0.293 3.707 9 O -0.423 6.423 10 N -0.379 5.379 11 C 0.008 3.992 12 C -0.146 4.146 13 C -0.182 4.182 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.201 4.201 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.935 -9.971 7.428 26.972 hybrid contribution 0.280 1.044 -0.550 1.213 sum -23.655 -8.927 6.878 26.202 Atomic orbital electron populations 1.21826 0.95996 1.01466 1.01816 1.21568 0.95717 0.96327 1.02197 1.21205 0.95248 0.96303 0.98427 0.91221 1.21959 1.01227 1.00534 0.97242 1.21395 0.94107 0.94750 1.03474 1.21751 0.92058 1.00228 1.04174 1.20761 0.90223 0.83687 0.75998 1.90704 1.70126 1.31533 1.49889 1.46108 1.08428 1.08699 1.74634 1.21421 0.78836 0.97135 1.01819 1.22683 0.97553 0.94338 1.00049 1.23423 0.93480 1.00957 1.00297 1.21526 0.87658 0.94956 0.90545 1.42423 1.31091 1.08613 1.53012 1.19349 1.09079 0.87557 1.21486 0.91040 1.24780 0.98435 0.97100 1.00690 1.69672 1.22001 1.25662 1.40653 0.86117 0.78238 0.82984 0.78835 1.20540 1.21840 1.21868 1.23987 1.00957 0.99890 0.95305 0.92951 0.92863 0.92518 0.91909 0.91964 0.92587 0.92562 0.92515 0.91136 0.91255 0.89129 0.88794 0.76664 0.91324 0.91904 0.89430 0.90108 0.92005 0.90767 0.78069 0.93496 0.92800 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.80 5.40 -26.73 -0.14 -0.94 16 3 C -0.09 -0.63 2.39 -90.62 -0.22 -0.84 16 4 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.96 8.70 37.16 0.32 -0.64 16 6 C -0.10 -0.86 3.97 -26.73 -0.11 -0.97 16 7 C -0.14 -1.16 5.45 -27.88 -0.15 -1.31 16 8 C 0.51 6.18 7.83 -10.99 -0.09 6.09 16 9 O -0.55 -9.01 15.98 5.56 0.09 -8.92 16 10 N -0.73 -8.08 5.56 -60.29 -0.33 -8.41 16 11 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 12 C -0.13 -1.69 3.76 -89.67 -0.34 -2.02 16 13 C -0.14 -2.26 7.39 -25.92 -0.19 -2.45 16 14 C 0.17 3.19 4.47 -67.12 -0.30 2.89 16 15 N -0.71 -17.84 5.41 -52.64 -0.28 -18.12 16 16 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C -0.16 -2.64 7.45 -25.77 -0.19 -2.83 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 32 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.64 6.56 -51.93 -0.34 0.30 16 37 H 0.40 3.35 8.47 -40.82 -0.35 3.01 16 38 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.42 8.11 -51.93 -0.42 0.99 16 44 H 0.39 10.28 7.91 -40.82 -0.32 9.96 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -32.15 374.81 -9.22 -41.37 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.73 Total: 7.87 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.31 Total: -9.21 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.10 Total: -54.06 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.15 -9.22 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100775691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.082 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds