Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.08993 * 109.47334 * 304.99568 * 3 2 1 5 5 C 1.53004 * 109.47235 * 64.99919 * 3 2 1 6 6 C 1.53004 * 109.46804 * 184.99533 * 3 2 1 7 7 C 1.53002 * 109.47044 * 174.99867 * 6 3 2 8 8 C 1.50697 * 109.47431 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09000 * 109.47326 * 300.00122 * 1 2 3 26 26 H 1.09004 * 109.46923 * 60.00507 * 1 2 3 27 27 H 1.09007 * 109.46996 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47326 * 239.99878 * 2 1 3 29 29 H 1.09004 * 109.46923 * 119.99493 * 2 1 3 30 30 H 1.09001 * 109.47251 * 59.99844 * 5 3 2 31 31 H 1.08999 * 109.47051 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.46933 * 299.99653 * 5 3 2 33 33 H 1.09005 * 109.47148 * 55.00555 * 6 3 2 34 34 H 1.08995 * 109.47298 * 294.99701 * 6 3 2 35 35 H 1.09005 * 109.47358 * 59.99831 * 7 6 3 36 36 H 1.09006 * 109.47182 * 300.00516 * 7 6 3 37 37 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 39 39 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 40 40 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 41 41 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 42 42 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 43 43 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 44 44 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 45 45 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 46 46 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 47 47 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5648 1.4443 -0.1256 7 6 4.0645 2.8850 -0.2511 8 6 5.5663 2.8869 -0.3754 9 8 6.1769 1.8390 -0.3652 10 7 6.2308 4.0528 -0.4990 11 6 7.6908 4.0546 -0.6204 12 6 8.1905 5.4953 -0.7458 13 6 9.7234 5.6169 -0.7568 14 6 9.5517 6.6933 -1.8416 15 7 10.5514 6.6149 -2.9095 16 6 10.8439 7.7249 -3.6564 17 1 10.3379 8.6581 -3.4577 18 6 11.7915 7.6508 -4.6680 19 7 12.4086 6.5135 -4.9098 20 14 12.1911 9.1650 -5.6863 21 1 11.3658 10.3077 -5.2189 22 1 13.6303 9.4982 -5.5341 23 1 11.8945 8.8928 -7.1156 24 6 8.2175 6.0153 -2.1956 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.0698 1.5876 2.1492 31 1 1.9988 3.1541 1.3075 32 1 0.5489 2.1253 1.3969 33 1 3.8571 0.8801 -1.0113 34 1 4.0029 0.9837 0.7598 35 1 3.7722 3.4494 0.6345 36 1 3.6264 3.3458 -1.1365 37 1 5.7426 4.8909 -0.5075 38 1 7.9824 3.4902 -1.5062 39 1 8.1296 3.5938 0.2646 40 1 7.7037 6.1744 -0.0459 41 1 10.2301 4.7186 -1.1095 42 1 10.1379 5.9993 0.1760 43 1 9.4369 7.7011 -1.4424 44 1 11.0059 5.7768 -3.0878 45 1 13.0705 6.4616 -5.6169 46 1 7.4170 6.7190 -2.4235 47 1 8.3133 5.2257 -2.9409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100775692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -44.448492 kcal Electronic energy + Delta-G solvation = -21518.772483 eV Core-core repulsion = 18315.010937 eV Total energy + Delta-G solvation = -3203.761546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89940 -38.52579 -37.36352 -34.65080 -33.28711 -32.55216 -30.31908 -29.23447 -27.45700 -25.81749 -25.09010 -23.89089 -22.70300 -21.02830 -20.38579 -20.13013 -19.02450 -17.18173 -16.94605 -16.09731 -16.02146 -15.32782 -15.06577 -14.75324 -14.56213 -14.10266 -13.79017 -13.69296 -13.38050 -13.23279 -12.99389 -12.67737 -12.30248 -12.04967 -11.97046 -11.88205 -11.78944 -11.37161 -11.24382 -11.22484 -10.88867 -10.85665 -10.83570 -10.73662 -10.52856 -10.25016 -10.11429 -9.82205 -9.78340 -9.47053 -8.99491 -8.87439 -6.96645 -5.78903 -3.07809 2.64313 3.19305 3.41846 3.47265 3.49760 4.38996 4.49520 4.54500 4.57716 4.79057 4.91145 4.96561 4.98957 5.07325 5.08504 5.21107 5.22599 5.23978 5.36303 5.45241 5.46348 5.51187 5.61428 5.67853 5.72413 5.76402 5.76847 5.83211 5.86427 5.94214 5.95624 6.08981 6.10600 6.15590 6.27072 6.31702 6.36422 6.48308 6.59264 6.82747 7.11423 7.50593 7.68916 8.23206 8.39664 9.50708 10.09223 10.43345 11.43540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036469 B = 0.002170 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.583760 B =12900.575966 C =13072.147136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.142 4.142 8 C 0.507 3.493 9 O -0.545 6.545 10 N -0.727 5.727 11 C 0.131 3.869 12 C -0.127 4.127 13 C -0.142 4.142 14 C 0.165 3.835 15 N -0.713 5.713 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.160 4.160 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.053 0.947 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.779 -8.214 12.999 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.182 4.182 8 C 0.293 3.707 9 O -0.423 6.423 10 N -0.379 5.379 11 C 0.008 3.992 12 C -0.146 4.146 13 C -0.182 4.182 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.201 4.201 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.262 -8.783 12.900 27.187 hybrid contribution 0.176 0.969 -0.713 1.216 sum -22.086 -7.813 12.188 26.408 Atomic orbital electron populations 1.21829 0.95993 1.01473 1.01816 1.21568 0.95722 0.96316 1.02200 1.21210 0.95273 0.96330 0.98429 0.91144 1.21955 1.01229 1.00460 0.97234 1.21393 0.94086 0.94766 1.03471 1.21751 0.92080 1.00209 1.04170 1.20761 0.90211 0.83682 0.76014 1.90704 1.70112 1.31499 1.49937 1.46107 1.08474 1.08724 1.74563 1.21421 0.78776 0.97210 1.01804 1.22683 0.97912 0.94561 0.99467 1.23423 0.93327 1.01185 1.00222 1.21526 0.88798 0.95564 0.88799 1.42423 1.44815 1.11605 1.36295 1.19349 1.17438 0.90279 1.10399 0.91040 1.24780 0.99418 0.97099 0.99714 1.69672 1.29838 1.24247 1.34234 0.86116 0.77795 0.82175 0.80084 1.20540 1.21841 1.21867 1.23987 1.01345 1.00789 0.94016 0.92552 0.92823 0.92948 0.91903 0.91961 0.92668 0.92565 0.92563 0.91169 0.91221 0.88911 0.89009 0.76664 0.91323 0.91905 0.89431 0.90108 0.92006 0.90767 0.78069 0.93495 0.92799 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.80 5.40 -26.73 -0.14 -0.95 16 3 C -0.09 -0.63 2.39 -90.61 -0.22 -0.85 16 4 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 5 C -0.15 -0.90 8.70 37.16 0.32 -0.57 16 6 C -0.10 -0.86 3.97 -26.73 -0.11 -0.96 16 7 C -0.14 -1.16 5.45 -27.88 -0.15 -1.31 16 8 C 0.51 6.18 7.83 -10.99 -0.09 6.09 16 9 O -0.55 -9.01 15.98 5.56 0.09 -8.92 16 10 N -0.73 -8.08 5.56 -60.29 -0.33 -8.41 16 11 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 12 C -0.13 -1.69 3.76 -89.67 -0.34 -2.02 16 13 C -0.14 -2.26 7.39 -25.92 -0.19 -2.45 16 14 C 0.17 3.19 4.47 -67.12 -0.30 2.89 16 15 N -0.71 -17.84 5.41 -52.64 -0.28 -18.12 16 16 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C -0.16 -2.64 7.45 -25.77 -0.19 -2.83 16 25 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 32 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 33 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.58 6.56 -51.93 -0.34 0.24 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.40 3.35 8.47 -40.82 -0.35 3.01 16 38 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.42 8.11 -51.93 -0.42 0.99 16 44 H 0.39 10.28 7.91 -40.82 -0.32 9.96 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -32.15 374.82 -9.22 -41.38 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -8.73 Total: 7.82 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.31 Total: -9.16 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.10 Total: -54.07 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.15 -9.22 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100775692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.073 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds