Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.08993 * 109.47334 * 304.99568 * 3 2 1 5 5 C 1.53004 * 109.47235 * 64.99919 * 3 2 1 6 6 C 1.53004 * 109.46804 * 184.99533 * 3 2 1 7 7 C 1.53002 * 109.47044 * 174.99867 * 6 3 2 8 8 C 1.50697 * 109.47431 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09000 * 109.47326 * 300.00122 * 1 2 3 26 26 H 1.09004 * 109.46923 * 60.00507 * 1 2 3 27 27 H 1.09007 * 109.46996 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47326 * 239.99878 * 2 1 3 29 29 H 1.09004 * 109.46923 * 119.99493 * 2 1 3 30 30 H 1.09001 * 109.47251 * 59.99844 * 5 3 2 31 31 H 1.08999 * 109.47051 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.46933 * 299.99653 * 5 3 2 33 33 H 1.09005 * 109.47148 * 55.00555 * 6 3 2 34 34 H 1.08995 * 109.47298 * 294.99701 * 6 3 2 35 35 H 1.09005 * 109.47358 * 59.99831 * 7 6 3 36 36 H 1.09006 * 109.47182 * 300.00516 * 7 6 3 37 37 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 39 39 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 40 40 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 41 41 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 42 42 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 43 43 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 44 44 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 45 45 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 46 46 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 47 47 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5648 1.4443 -0.1256 7 6 4.0645 2.8850 -0.2511 8 6 5.5663 2.8869 -0.3754 9 8 6.1769 1.8390 -0.3652 10 7 6.2308 4.0528 -0.4990 11 6 7.6908 4.0546 -0.6204 12 6 8.1905 5.4953 -0.7458 13 6 9.7234 5.6169 -0.7568 14 6 9.5517 6.6933 -1.8416 15 7 10.5514 6.6149 -2.9095 16 6 10.8439 7.7249 -3.6564 17 1 10.3379 8.6581 -3.4577 18 6 11.7915 7.6508 -4.6680 19 7 12.4086 6.5135 -4.9098 20 14 12.1911 9.1650 -5.6863 21 1 11.3658 10.3077 -5.2189 22 1 13.6303 9.4982 -5.5341 23 1 11.8945 8.8928 -7.1156 24 6 8.2175 6.0153 -2.1956 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.0698 1.5876 2.1492 31 1 1.9988 3.1541 1.3075 32 1 0.5489 2.1253 1.3969 33 1 3.8571 0.8801 -1.0113 34 1 4.0029 0.9837 0.7598 35 1 3.7722 3.4494 0.6345 36 1 3.6264 3.3458 -1.1365 37 1 5.7426 4.8909 -0.5075 38 1 7.9824 3.4902 -1.5062 39 1 8.1296 3.5938 0.2646 40 1 7.7037 6.1744 -0.0459 41 1 10.2301 4.7186 -1.1095 42 1 10.1379 5.9993 0.1760 43 1 9.4369 7.7011 -1.4424 44 1 11.0059 5.7768 -3.0878 45 1 13.0705 6.4616 -5.6169 46 1 7.4170 6.7190 -2.4235 47 1 8.3133 5.2257 -2.9409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100775692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = -64.662786 kcal Electronic energy + Delta-G solvation = -21519.649041 eV Core-core repulsion = 18315.010937 eV Total energy + Delta-G solvation = -3204.638104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92823 -39.82263 -37.99578 -36.02731 -34.97877 -33.23796 -32.15969 -29.94289 -28.53872 -26.59232 -26.46138 -25.67532 -23.48067 -22.35667 -21.36836 -20.71792 -20.39829 -19.05248 -17.99143 -17.20058 -16.86684 -16.58204 -16.15853 -15.93459 -15.63795 -15.29211 -15.01120 -14.86796 -14.38345 -14.23995 -14.10770 -13.42119 -13.36080 -13.24018 -13.02566 -12.91966 -12.77746 -12.67297 -12.59435 -12.46668 -12.16373 -12.05875 -11.83749 -11.60116 -11.55391 -11.45239 -11.37547 -11.28035 -11.09663 -10.85706 -10.71391 -10.03603 -8.97922 -7.94881 -5.23368 1.47211 1.48036 1.58136 1.69588 2.27338 2.56590 3.37174 3.67325 3.75811 3.79341 3.84003 3.94403 3.98770 4.18874 4.25798 4.32909 4.35744 4.42156 4.48257 4.56010 4.59245 4.68420 4.74321 4.77167 4.82264 4.92738 4.97574 4.99060 5.06006 5.11155 5.14127 5.20913 5.22696 5.25657 5.27351 5.34870 5.38338 5.46998 5.54196 5.59994 5.61014 5.74256 6.27579 6.63053 7.32685 7.32860 8.11341 8.32875 9.28907 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036469 B = 0.002170 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.583760 B =12900.575966 C =13072.147136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.088 4.088 4 H 0.079 0.921 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.132 4.132 8 C 0.501 3.499 9 O -0.596 6.596 10 N -0.716 5.716 11 C 0.137 3.863 12 C -0.094 4.094 13 C -0.138 4.138 14 C 0.142 3.858 15 N -0.731 5.731 16 C -0.241 4.241 17 H 0.081 0.919 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.296 1.296 24 C -0.153 4.153 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.417 0.583 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.124 0.876 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.069 0.931 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.277 -6.374 14.330 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.106 4.106 4 H 0.097 0.903 5 C -0.208 4.208 6 C -0.135 4.135 7 C -0.172 4.172 8 C 0.290 3.710 9 O -0.477 6.477 10 N -0.368 5.368 11 C 0.013 3.987 12 C -0.113 4.113 13 C -0.177 4.177 14 C 0.033 3.967 15 N -0.368 5.368 16 C -0.372 4.372 17 H 0.098 0.902 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.222 1.222 23 H -0.223 1.223 24 C -0.193 4.193 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.254 0.746 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.832 -6.892 14.278 29.462 hybrid contribution 0.913 0.362 -1.063 1.447 sum -23.920 -6.530 13.215 28.097 Atomic orbital electron populations 1.21809 0.95022 1.01767 1.02252 1.21588 0.96567 0.96397 1.01564 1.21160 0.93566 0.96465 0.99403 0.90287 1.21954 1.01788 1.00773 0.96266 1.21347 0.95551 0.94940 1.01689 1.21783 0.88717 1.00228 1.06436 1.21529 0.91852 0.82953 0.74688 1.90689 1.71426 1.33336 1.52229 1.45979 1.07514 1.09504 1.73814 1.21177 0.80343 0.96689 1.00536 1.22512 0.95981 0.95002 0.97758 1.23316 0.95543 0.99273 0.99578 1.21977 0.88924 0.97168 0.88635 1.42656 1.46165 1.10336 1.37691 1.19786 1.16368 0.91198 1.09896 0.90156 1.25623 1.00199 0.99943 1.01604 1.69837 1.30967 1.26442 1.35157 0.85056 0.77313 0.79303 0.77998 1.18658 1.22202 1.22335 1.23757 0.99892 1.00083 0.95586 0.91912 0.92518 0.92814 0.92771 0.92492 0.93232 0.91500 0.91739 0.93308 0.92889 0.86127 0.86768 0.74594 0.94049 0.92052 0.85839 0.91722 0.90243 0.90044 0.79734 0.94145 0.91189 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 71.98 0.70 -0.82 16 2 C -0.12 -1.55 5.40 30.60 0.17 -1.39 16 3 C -0.09 -1.02 2.39 -10.79 -0.03 -1.05 16 4 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 5 C -0.15 -1.40 8.70 71.98 0.63 -0.78 16 6 C -0.10 -1.60 3.97 30.60 0.12 -1.48 16 7 C -0.13 -1.82 5.45 29.85 0.16 -1.66 16 8 C 0.50 11.55 7.83 87.66 0.69 12.24 16 9 O -0.60 -19.92 15.98 -3.04 -0.05 -19.96 16 10 N -0.72 -14.23 5.56 -463.06 -2.57 -16.80 16 11 C 0.14 3.45 5.51 86.38 0.48 3.93 16 12 C -0.09 -2.24 3.76 -10.18 -0.04 -2.28 16 13 C -0.14 -4.20 7.39 31.12 0.23 -3.97 16 14 C 0.14 5.34 4.47 45.52 0.20 5.54 16 15 N -0.73 -36.94 5.41 -320.44 -1.73 -38.68 16 16 C -0.24 -13.32 9.97 84.03 0.84 -12.48 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 18 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 19 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 20 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 C -0.15 -4.79 7.45 31.21 0.23 -4.56 16 25 H 0.06 0.55 6.56 -2.39 -0.02 0.53 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.48 6.56 -2.39 -0.02 0.47 16 32 H 0.06 0.51 6.56 -2.39 -0.02 0.50 16 33 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 34 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.12 1.04 6.56 -2.38 -0.02 1.03 16 36 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.42 5.38 8.47 -92.71 -0.79 4.59 16 38 H 0.04 1.29 7.85 -2.39 -0.02 1.27 16 39 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 44 H 0.37 20.48 7.91 -92.71 -0.73 19.75 16 45 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 Total: -1.00 -71.83 374.82 2.21 -69.62 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.58 Total: 30.85 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.84 Total: -13.03 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -4.02 Total: -115.74 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -71.83 2.21 -69.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100775692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.954 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds