Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.53000 * 109.47060 * 65.00062 * 3 2 1 6 6 C 1.53001 * 109.47049 * 185.00237 * 3 2 1 7 7 C 1.50699 * 109.46841 * 175.00091 * 6 3 2 8 8 O 1.21280 * 120.00244 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99627 * 179.97438 * 7 6 3 10 10 C 1.46499 * 120.00014 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47228 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.88414 * 51.12308 * 11 10 9 13 13 C 1.54907 * 111.00338 * 287.19509 * 11 10 9 14 14 N 1.47422 * 104.83451 * 204.91606 * 13 11 10 15 15 C 1.36936 * 125.64930 * 204.08598 * 14 13 11 16 16 H 1.07999 * 120.00311 * 0.02951 * 15 14 13 17 17 C 1.38813 * 119.99580 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00385 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99653 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46874 * 60.00353 * 19 17 15 21 21 H 1.48496 * 109.47096 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47344 * 300.00293 * 19 17 15 23 23 C 1.47024 * 108.70239 * 24.13136 * 14 13 11 24 24 C 1.54325 * 107.26779 * 358.94145 * 23 14 13 25 25 H 1.09003 * 110.71998 * 96.17131 * 24 23 14 26 26 C 1.53008 * 110.86891 * 219.36919 * 24 23 14 27 27 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 31 31 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 32 32 H 1.08995 * 109.47185 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47227 * 300.00275 * 5 3 2 34 34 H 1.09006 * 109.46717 * 59.99823 * 5 3 2 35 35 H 1.09005 * 109.47062 * 295.00108 * 6 3 2 36 36 H 1.08995 * 109.47139 * 55.00312 * 6 3 2 37 37 H 0.96995 * 120.00064 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47614 * 300.00977 * 10 9 7 39 39 H 1.09005 * 109.47209 * 60.00614 * 10 9 7 40 40 H 1.09001 * 110.37182 * 323.75775 * 13 11 10 41 41 H 1.09009 * 110.36237 * 86.07668 * 13 11 10 42 42 H 0.96996 * 119.99911 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.88313 * 239.52577 * 23 14 13 44 44 H 1.08998 * 109.88279 * 118.35692 * 23 14 13 45 45 H 1.09007 * 109.46667 * 173.60781 * 26 24 23 46 46 H 1.08995 * 109.46934 * 293.61173 * 26 24 23 47 47 H 1.08994 * 109.46594 * 53.61579 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2493 8 8 3.2661 3.7826 -0.2373 9 7 5.3762 3.1107 -0.3719 10 6 5.8546 4.4901 -0.4926 11 6 7.3794 4.4920 -0.6182 12 1 7.7056 3.8079 -1.4016 13 6 8.0485 4.1468 0.7356 14 7 9.3881 4.7578 0.6612 15 6 10.4876 4.3597 1.3738 16 1 10.4141 3.5302 2.0615 17 6 11.6966 5.0222 1.2120 18 7 11.7861 6.0333 0.3742 19 14 13.1964 4.4794 2.1845 20 1 13.5147 3.0666 1.8560 21 1 14.3528 5.3424 1.8335 22 1 12.9138 4.5982 3.6374 23 6 9.3477 5.8663 -0.3038 24 6 7.9147 5.9257 -0.8735 25 1 7.3165 6.6620 -0.3366 26 6 7.9361 6.2369 -2.3714 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.9990 3.1540 1.3076 33 1 0.5490 2.1252 1.3970 34 1 2.0700 1.5874 2.1492 35 1 4.0030 0.9835 0.7596 36 1 3.8571 0.8801 -1.0114 37 1 6.0087 2.3755 -0.3811 38 1 5.4168 4.9505 -1.3783 39 1 5.5620 5.0549 0.3927 40 1 7.4804 4.5772 1.5603 41 1 8.1304 3.0662 0.8536 42 1 12.6311 6.4959 0.2609 43 1 10.0593 5.6830 -1.1088 44 1 9.5862 6.8038 0.1983 45 1 6.9253 6.1617 -2.7726 46 1 8.3148 7.2470 -2.5273 47 1 8.5833 5.5234 -2.8814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101916558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -46.186504 kcal Electronic energy + Delta-G solvation = -22603.843422 eV Core-core repulsion = 19400.006510 eV Total energy + Delta-G solvation = -3203.836912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90056 -38.10844 -36.51374 -34.57934 -32.93837 -31.06088 -30.72912 -29.40738 -27.60753 -25.94837 -25.12308 -24.07008 -22.64403 -20.71639 -20.08648 -19.87872 -19.13305 -17.09348 -16.63711 -16.00747 -15.80748 -15.10348 -14.84629 -14.41307 -14.24091 -13.95949 -13.69190 -13.45034 -13.04763 -12.92764 -12.63918 -12.51586 -12.11710 -12.05529 -11.77503 -11.65214 -11.48249 -11.38753 -11.21295 -10.99507 -10.82089 -10.78519 -10.77920 -10.73421 -10.17401 -10.01826 -9.94105 -9.88066 -9.62261 -9.46052 -8.88941 -8.60367 -6.83360 -5.71386 -3.04997 2.72412 3.29392 3.39671 3.43960 3.45310 4.48723 4.58460 4.61024 4.69383 5.00108 5.07135 5.14354 5.22227 5.28974 5.33317 5.41413 5.49496 5.50626 5.53397 5.57051 5.60253 5.76754 5.77512 5.85322 5.87499 5.88727 6.01886 6.03719 6.13291 6.19065 6.24353 6.29612 6.36015 6.48815 6.53340 6.57876 6.63323 6.77576 6.95218 7.56050 7.61036 7.64554 7.83480 8.26009 8.32356 9.21896 9.82275 10.48635 11.40140 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.003093 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.702163 B = 9049.776107 C = 9825.856910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.543 6.543 9 N -0.727 5.727 10 C 0.132 3.868 11 C -0.112 4.112 12 H 0.079 0.921 13 C 0.142 3.858 14 N -0.607 5.607 15 C -0.229 4.229 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.184 3.816 24 C -0.111 4.111 25 H 0.067 0.933 26 C -0.134 4.134 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.018 0.982 41 H 0.035 0.965 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 -9.505 -3.485 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.212 4.212 6 C -0.179 4.179 7 C 0.296 3.704 8 O -0.421 6.421 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.132 4.132 12 H 0.098 0.902 13 C 0.016 3.984 14 N -0.333 5.333 15 C -0.358 4.358 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.059 3.941 24 C -0.131 4.131 25 H 0.085 0.915 26 C -0.191 4.191 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.905 -8.754 -3.448 20.227 hybrid contribution 1.284 -0.609 0.520 1.513 sum -16.621 -9.362 -2.929 19.300 Atomic orbital electron populations 1.21807 0.95824 1.01339 1.02085 1.21602 0.96106 0.96233 1.01885 1.20903 0.92828 0.95814 0.99871 0.90491 1.21998 1.00997 1.02307 0.95871 1.21783 0.97738 0.94253 1.04165 1.20678 0.82189 0.91572 0.75942 1.90654 1.54732 1.46729 1.50016 1.46145 1.07463 1.09810 1.74370 1.21374 0.93932 0.82156 1.01668 1.22669 0.91930 0.98839 0.99779 0.90228 1.21577 0.87454 0.96184 0.93190 1.44463 1.04969 1.35509 1.48342 1.19003 0.86883 1.12492 1.17386 0.90568 1.24804 0.97808 0.98179 0.99668 1.69950 1.24939 1.23286 1.38741 0.86204 0.82418 0.77666 0.79489 1.21194 1.21597 1.21194 1.21217 0.89136 0.91508 0.92228 1.22442 1.00104 0.94517 0.96014 0.91479 1.21689 1.00352 1.01524 0.95575 0.92389 0.92772 0.92977 0.91958 0.92073 0.90632 0.92859 0.93432 0.88930 0.89077 0.76499 0.91799 0.91533 0.96398 0.94670 0.93702 0.93322 0.94062 0.93684 0.92776 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.89 5.40 -26.73 -0.14 -1.04 16 3 C -0.08 -0.70 2.04 -90.62 -0.18 -0.89 16 4 H 0.08 0.83 7.96 -51.93 -0.41 0.41 16 5 C -0.15 -1.59 8.69 37.16 0.32 -1.26 16 6 C -0.14 -1.26 5.17 -27.88 -0.14 -1.41 16 7 C 0.51 6.49 7.55 -10.99 -0.08 6.41 16 8 O -0.54 -8.81 13.96 5.56 0.08 -8.73 16 9 N -0.73 -9.00 5.50 -60.29 -0.33 -9.33 16 10 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 11 C -0.11 -1.85 2.49 -88.47 -0.22 -2.07 16 12 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 13 C 0.14 2.84 6.65 -2.53 -0.02 2.82 16 14 N -0.61 -15.33 3.39 -170.07 -0.58 -15.91 16 15 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 19 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.18 4.40 4.97 -3.06 -0.02 4.39 16 24 C -0.11 -2.01 3.01 -88.78 -0.27 -2.28 16 25 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 26 C -0.13 -2.09 9.17 37.16 0.34 -1.75 16 27 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.98 5.95 -51.93 -0.31 0.67 16 33 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 40 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 41 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 43 H 0.05 1.28 7.02 -51.93 -0.36 0.92 16 44 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 45 H 0.04 0.61 8.08 -51.92 -0.42 0.19 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -31.45 365.40 -8.87 -40.33 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.77 Total: 0.32 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.32 Total: -2.75 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.34 Total: -51.68 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.45 -8.87 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101916558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.859 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds