Wall clock time and date at job start Tue Mar 31 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.53000 * 109.47060 * 65.00062 * 3 2 1 6 6 C 1.53001 * 109.47049 * 185.00237 * 3 2 1 7 7 C 1.50699 * 109.46841 * 175.00091 * 6 3 2 8 8 O 1.21280 * 120.00244 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99627 * 179.97438 * 7 6 3 10 10 C 1.46499 * 120.00014 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47228 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.88414 * 51.12308 * 11 10 9 13 13 C 1.54907 * 111.00338 * 287.19509 * 11 10 9 14 14 N 1.47422 * 104.83451 * 204.91606 * 13 11 10 15 15 C 1.36936 * 125.64930 * 204.08598 * 14 13 11 16 16 H 1.07999 * 120.00311 * 0.02951 * 15 14 13 17 17 C 1.38813 * 119.99580 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00385 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99653 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46874 * 60.00353 * 19 17 15 21 21 H 1.48496 * 109.47096 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47344 * 300.00293 * 19 17 15 23 23 C 1.47024 * 108.70239 * 24.13136 * 14 13 11 24 24 C 1.54325 * 107.26779 * 358.94145 * 23 14 13 25 25 H 1.09003 * 110.71998 * 96.17131 * 24 23 14 26 26 C 1.53008 * 110.86891 * 219.36919 * 24 23 14 27 27 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 31 31 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 32 32 H 1.08995 * 109.47185 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47227 * 300.00275 * 5 3 2 34 34 H 1.09006 * 109.46717 * 59.99823 * 5 3 2 35 35 H 1.09005 * 109.47062 * 295.00108 * 6 3 2 36 36 H 1.08995 * 109.47139 * 55.00312 * 6 3 2 37 37 H 0.96995 * 120.00064 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47614 * 300.00977 * 10 9 7 39 39 H 1.09005 * 109.47209 * 60.00614 * 10 9 7 40 40 H 1.09001 * 110.37182 * 323.75775 * 13 11 10 41 41 H 1.09009 * 110.36237 * 86.07668 * 13 11 10 42 42 H 0.96996 * 119.99911 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.88313 * 239.52577 * 23 14 13 44 44 H 1.08998 * 109.88279 * 118.35692 * 23 14 13 45 45 H 1.09007 * 109.46667 * 173.60781 * 26 24 23 46 46 H 1.08995 * 109.46934 * 293.61173 * 26 24 23 47 47 H 1.08994 * 109.46594 * 53.61579 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2493 8 8 3.2661 3.7826 -0.2373 9 7 5.3762 3.1107 -0.3719 10 6 5.8546 4.4901 -0.4926 11 6 7.3794 4.4920 -0.6182 12 1 7.7056 3.8079 -1.4016 13 6 8.0485 4.1468 0.7356 14 7 9.3881 4.7578 0.6612 15 6 10.4876 4.3597 1.3738 16 1 10.4141 3.5302 2.0615 17 6 11.6966 5.0222 1.2120 18 7 11.7861 6.0333 0.3742 19 14 13.1964 4.4794 2.1845 20 1 13.5147 3.0666 1.8560 21 1 14.3528 5.3424 1.8335 22 1 12.9138 4.5982 3.6374 23 6 9.3477 5.8663 -0.3038 24 6 7.9147 5.9257 -0.8735 25 1 7.3165 6.6620 -0.3366 26 6 7.9361 6.2369 -2.3714 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.9990 3.1540 1.3076 33 1 0.5490 2.1252 1.3970 34 1 2.0700 1.5874 2.1492 35 1 4.0030 0.9835 0.7596 36 1 3.8571 0.8801 -1.0114 37 1 6.0087 2.3755 -0.3811 38 1 5.4168 4.9505 -1.3783 39 1 5.5620 5.0549 0.3927 40 1 7.4804 4.5772 1.5603 41 1 8.1304 3.0662 0.8536 42 1 12.6311 6.4959 0.2609 43 1 10.0593 5.6830 -1.1088 44 1 9.5862 6.8038 0.1983 45 1 6.9253 6.1617 -2.7726 46 1 8.3148 7.2470 -2.5273 47 1 8.5833 5.5234 -2.8814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101916558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:11 Heat of formation + Delta-G solvation = -65.239130 kcal Electronic energy + Delta-G solvation = -22604.669606 eV Core-core repulsion = 19400.006510 eV Total energy + Delta-G solvation = -3204.663096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94475 -39.63599 -37.31324 -35.92665 -34.64291 -32.54732 -31.85022 -30.67419 -28.59504 -27.73898 -26.53332 -25.03148 -24.08609 -21.84467 -21.55649 -20.85859 -20.46564 -18.85730 -17.89111 -17.22875 -16.80052 -16.53173 -15.92519 -15.82609 -15.55470 -15.17047 -14.77587 -14.73117 -14.40081 -14.14624 -13.96519 -13.45154 -13.41367 -13.25086 -13.10086 -12.88855 -12.76266 -12.69870 -12.58761 -12.42924 -12.14825 -11.96605 -11.83152 -11.72514 -11.55947 -11.51326 -11.39950 -11.36538 -11.32087 -10.70286 -10.59268 -9.98239 -8.89312 -7.84174 -5.19972 1.45598 1.48925 1.55155 1.75207 2.30384 2.49740 3.33551 3.62352 3.72205 3.86137 3.91344 3.95664 3.96812 4.04260 4.31442 4.39807 4.48800 4.51009 4.60776 4.66711 4.72124 4.74821 4.78057 4.83680 4.86242 4.88295 4.95543 4.97844 5.08841 5.16129 5.17534 5.21933 5.27171 5.34365 5.35344 5.41976 5.47251 5.51413 5.59127 5.64346 5.71635 5.81833 6.20648 6.65408 7.10852 7.35869 7.78717 8.43454 9.25906 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.003093 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.702163 B = 9049.776107 C = 9825.856910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.074 4.074 4 H 0.059 0.941 5 C -0.153 4.153 6 C -0.133 4.133 7 C 0.506 3.494 8 O -0.582 6.582 9 N -0.721 5.721 10 C 0.145 3.855 11 C -0.089 4.089 12 H 0.090 0.910 13 C 0.138 3.862 14 N -0.630 5.630 15 C -0.243 4.243 16 H 0.083 0.917 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.274 1.274 21 H -0.296 1.296 22 H -0.279 1.279 23 C 0.192 3.808 24 C -0.103 4.103 25 H 0.071 0.929 26 C -0.127 4.127 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.050 0.950 42 H 0.246 0.754 43 H 0.017 0.983 44 H -0.002 1.002 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 -11.835 -3.734 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.210 4.210 6 C -0.172 4.172 7 C 0.295 3.705 8 O -0.462 6.462 9 N -0.373 5.373 10 C 0.021 3.979 11 C -0.109 4.109 12 H 0.108 0.892 13 C 0.013 3.987 14 N -0.356 5.356 15 C -0.372 4.372 16 H 0.101 0.899 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.205 1.205 23 C 0.067 3.933 24 C -0.122 4.122 25 H 0.090 0.910 26 C -0.184 4.184 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.035 0.965 44 H 0.016 0.984 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.022 -11.128 -3.692 22.345 hybrid contribution 1.577 0.126 0.644 1.708 sum -17.445 -11.002 -3.048 20.848 Atomic orbital electron populations 1.21824 0.95795 1.01926 1.01707 1.21564 0.96127 0.94720 1.02860 1.20885 0.93115 0.96859 0.98462 0.92253 1.21959 1.01343 1.00716 0.96975 1.21834 0.97346 0.91862 1.06199 1.21348 0.81671 0.92762 0.74738 1.90651 1.55635 1.48265 1.51651 1.46063 1.07866 1.09221 1.74165 1.21079 0.92017 0.83469 1.01357 1.22460 0.93044 0.97525 0.97828 0.89191 1.21755 0.85283 0.96620 0.95029 1.44803 1.06365 1.36189 1.48231 1.19437 0.87927 1.12409 1.17423 0.89876 1.25672 1.00792 0.98572 1.01063 1.70186 1.25034 1.24499 1.40345 0.85153 0.78537 0.77462 0.78185 1.19980 1.22204 1.20489 1.20973 0.92160 0.89372 0.90797 1.22322 0.96232 0.96024 0.97670 0.91038 1.21631 1.02082 1.01378 0.93317 0.92808 0.93189 0.91894 0.91111 0.90894 0.93622 0.92395 0.92541 0.87084 0.86499 0.75107 0.91127 0.92936 0.96748 0.93204 0.94467 0.96497 0.98364 0.90661 0.92798 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.67 71.98 0.70 -1.18 16 2 C -0.12 -1.38 5.40 30.60 0.17 -1.21 16 3 C -0.07 -1.24 2.04 -10.79 -0.02 -1.26 16 4 H 0.06 1.21 7.96 -2.39 -0.02 1.19 16 5 C -0.15 -2.98 8.69 71.98 0.63 -2.35 16 6 C -0.13 -2.02 5.17 29.85 0.15 -1.86 16 7 C 0.51 11.89 7.55 87.66 0.66 12.56 16 8 O -0.58 -18.40 13.96 -3.03 -0.04 -18.45 16 9 N -0.72 -16.07 5.50 -463.05 -2.55 -18.61 16 10 C 0.15 3.91 5.13 86.38 0.44 4.35 16 11 C -0.09 -2.78 2.49 -9.40 -0.02 -2.81 16 12 H 0.09 2.69 8.05 -2.39 -0.02 2.67 16 13 C 0.14 5.39 6.65 86.85 0.58 5.96 16 14 N -0.63 -32.22 3.39 -691.99 -2.35 -34.57 16 15 C -0.24 -13.60 10.28 84.03 0.86 -12.74 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 18 N -0.95 -57.72 10.31 21.65 0.22 -57.49 16 19 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.19 9.49 4.97 86.73 0.43 9.93 16 24 C -0.10 -3.68 3.01 -9.60 -0.03 -3.70 16 25 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 26 C -0.13 -3.76 9.17 71.98 0.66 -3.10 16 27 H 0.05 0.68 6.57 -2.39 -0.02 0.67 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 1.17 5.95 -2.39 -0.01 1.16 16 33 H 0.06 1.03 6.56 -2.39 -0.02 1.02 16 34 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.41 7.32 8.47 -92.71 -0.79 6.53 16 38 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 39 H 0.05 1.59 7.96 -2.38 -0.02 1.57 16 40 H 0.01 0.59 7.91 -2.39 -0.02 0.57 16 41 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.02 0.93 7.02 -2.39 -0.02 0.91 16 44 H 0.00 -0.11 7.50 -2.39 -0.02 -0.13 16 45 H 0.07 1.81 8.08 -2.38 -0.02 1.79 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 Total: -1.00 -70.53 365.40 3.12 -67.42 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.13 Total: 14.77 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 5.67 Total: -0.85 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.67 Total: -110.68 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.04 Total: -18.45 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.53 3.12 -67.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101916558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.179 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds